Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G17030 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 3.1e-218 761.5 390 100.0
AT3G27610 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 5.0e-200 701.0 391 92.6
Carub.0005s0605 Capsella rubella HOM05D005909 ORTHO05D007481 9.4e-191 670.2 387 88.6
CARHR148990 Cardamine hirsuta HOM05D005909 ORTHO05D007481 1.6e-182 642.9 385 84.7
BcaC06g34207 Brassica carinata HOM05D005909 ORTHO05D007481 6.1e-182 641.0 382 85.1
Sp2g12680 Schrenkiella parvula HOM05D005909 ORTHO05D007481 6.7e-181 637.5 384 83.3
C07p31670 Brassica napus HOM05D005909 ORTHO05D007481 1.5e-180 636.3 383 84.9
BolC7t43706H Brassica oleracea HOM05D005909 ORTHO05D007481 1.5e-180 636.3 383 84.9
CARHR143760 Cardamine hirsuta HOM05D005909 ORTHO05D007481 1.5e-180 636.3 390 81.5
AL5G10170 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 1.3e-179 633.3 390 82.1
A06p44550 Brassica napus HOM05D005909 ORTHO05D007481 1.4e-178 629.8 388 83.0
AT2G01220 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 1.8e-178 629.4 385 82.3
Thhalv10000909m.g Eutrema salsugineum HOM05D005909 ORTHO05D007481 2.4e-178 629.0 387 83.7
BraA06t27329Z Brassica rapa HOM05D005909 ORTHO05D007481 2.2e-176 622.5 393 81.7
Aa31LG2G8670 Aethionema arabicum HOM05D005909 ORTHO05D007481 2.0e-169 599.4 386 79.0
THA.LOC104823950 Tarenaya hassleriana HOM05D005909 ORTHO05D007481 1.2e-164 583.6 386 75.9
QL01p010815 Quercus lobata HOM05D005909 ORTHO05D007481 2.8e-150 535.8 385 68.1
QL93p0145_0024 Quercus lobata HOM05D005909 ORTHO05D007481 2.8e-150 535.8 385 68.1
COL.COLO4_32148 Corchorus olitorius HOM05D005909 ORTHO05D007481 2.3e-149 532.7 385 66.8
Lj5g0016761 Lotus japonicus HOM05D005909 ORTHO05D007481 3.1e-149 532.3 387 66.4
Prupe.1G316800 Prunus persica HOM05D005909 ORTHO05D007481 3.1e-149 532.3 379 69.1
Nn4g23953 Nelumbo nucifera HOM05D005909 ORTHO05D007481 4.0e-149 531.9 385 68.3
Sabra10G0090400 Salix brachista HOM05D005909 ORTHO05D007481 4.0e-149 531.9 385 67.3
TWI79G1572 Tripterygium wilfordii HOM05D005909 ORTHO05D007481 2.0e-148 529.6 384 65.9
Gohir.D02G171900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 2.6e-148 529.3 387 67.7
PGR119G2457 Punica granatum HOM05D005909 ORTHO05D007481 2.6e-148 529.3 385 66.8
GSVIVG01011843001 Vitis vinifera HOM05D005909 ORTHO05D007481 2.6e-148 529.3 386 67.9
Potri.010G120200 Populus trichocarpa HOM05D005909 ORTHO05D007481 5.8e-148 528.1 385 67.3
Lsat_1_v5_gn_3_62021 Lactuca sativa HOM05D005909 ORTHO05D007481 1.3e-147 526.9 384 67.7
CSS0033004 Camellia sinensis var. sinensis HOM05D005909 ORTHO05D007481 2.2e-147 526.2 385 67.8
CiPaw.05G242600 Carya illinoinensis HOM05D005909 ORTHO05D007481 2.2e-147 526.2 383 66.8
TAR622G1259 Trochodendron aralioides HOM05D005909 ORTHO05D007481 2.9e-147 525.8 385 66.5
Eucgr.G02238 Eucalyptus grandis HOM05D005909 ORTHO05D007481 3.7e-147 525.4 380 68.2
Gorai.005G193400 Gossypium raimondii HOM05D005909 ORTHO05D007481 4.9e-147 525.0 393 66.7
HanXRQChr15g0477421 Helianthus annuus HOM05D005909 ORTHO05D007481 4.9e-147 525.0 387 68.0
Hma1.2p1_1314F.1_g274990 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 4.9e-147 525.0 385 67.3
Atru.chr11.237 Acer truncatum HOM05D005909 ORTHO05D007481 8.3e-147 524.2 385 66.8
MD16G1037200 Malus domestica HOM05D005909 ORTHO05D007481 1.1e-146 523.9 385 68.8
Actinidia14921 Actinidia chinensis HOM05D005909 ORTHO05D007481 1.4e-146 523.5 385 68.3
Gohir.A03G148900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 1.4e-146 523.5 394 67.0
Hma1.2p1_2306F.1_g319360 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 1.4e-146 523.5 385 67.3
Nitab4.5_0002112g0090 Nicotiana tabacum HOM05D005909 ORTHO05D007481 3.2e-146 522.3 385 68.3
Duzib248G1493 Durio zibethinus HOM05D005909 ORTHO05D007481 7.0e-146 521.2 393 66.4
vmacro10599 Vaccinium macrocarpon HOM05D005909 ORTHO05D007481 1.2e-145 520.4 385 67.5
arahy.Tifrunner.gnm1.ann1.IU6D7D Arachis hypogaea HOM05D005909 ORTHO05D007481 2.0e-145 519.6 380 67.1
FvH4_4g26720 Fragaria vesca HOM05D005909 ORTHO05D007481 2.7e-145 519.2 377 67.1
MBI16_g44832_MAGBIO Magnolia biondii HOM05D005909 ORTHO05D007481 2.7e-145 519.2 385 67.0
TPR.G4906 Trifolium pratense HOM05D005909 ORTHO05D007481 4.6e-145 518.5 385 65.7
RcHm_v2.0_Chr4g0434411 Rosa chinensis HOM05D005909 ORTHO05D007481 7.8e-145 517.7 383 66.3
Ca_06889_v3 Cicer arietinum L. HOM05D005909 ORTHO05D007481 1.0e-144 517.3 385 65.2
ECA246G0525 Erigeron canadensis HOM05D005909 ORTHO05D007481 1.3e-144 516.9 382 67.0
CAN.G610.24 Capsicum annuum HOM05D005909 ORTHO05D007481 1.7e-144 516.5 385 67.3
Ciclev10015519m.g Citrus clementina HOM05D005909 ORTHO05D007481 1.7e-144 516.5 385 65.2
Nitab4.5_0000694g0120 Nicotiana tabacum HOM05D005909 ORTHO05D007481 1.7e-144 516.5 385 67.8
Aqoxy3G04056 Aquilegia oxysepala HOM05D005909 ORTHO05D007481 3.9e-144 515.4 385 65.7
Lalb_Chr21g0308731 Lupinus albus HOM05D005909 ORTHO05D007481 3.9e-144 515.4 380 66.1
Rhsim09G0103900 Rhododendron simsii HOM05D005909 ORTHO05D007481 3.9e-144 515.4 401 64.6
Glyma.20G120600 Glycine max HOM05D005909 ORTHO05D007481 6.6e-144 514.6 385 64.7
Solyc05g008870.3 Solanum lycopersicum HOM05D005909 ORTHO05D007481 1.1e-143 513.8 385 67.8
Sopen05g004630 Solanum pennellii HOM05D005909 ORTHO05D007481 1.1e-143 513.8 385 67.8
arahy.Tifrunner.gnm1.ann1.W577BF Arachis hypogaea HOM05D005909 ORTHO05D007481 5.6e-143 511.5 380 66.6
PSO782G5715 Papaver somniferum HOM05D005909 ORTHO05D007481 7.3e-143 511.1 383 66.6
VMungo0720G1068 Vigna mungo HOM05D005909 ORTHO05D007481 2.1e-142 509.6 381 65.4
Medtr1g109590 Medicago truncatula HOM05D005909 ORTHO05D007481 4.7e-142 508.4 385 63.9
Phvul.007G032000 Phaseolus vulgaris HOM05D005909 ORTHO05D007481 4.7e-142 508.4 385 65.5
Cc11_g09670 Coffea canephora HOM05D005909 ORTHO05D007481 6.2e-142 508.1 385 65.5
DCAR_007264 Daucus carota HOM05D005909 ORTHO05D007481 8.1e-142 507.7 383 65.5
Sc14g0007280 Simmondsia chinensis HOM05D005909 ORTHO05D007481 4.0e-141 505.4 387 64.9
Cfa015837 Carpinus fangiana HOM05D005909 ORTHO05D007481 5.2e-141 505.0 385 65.2
Psat6g224680 Pisum sativum HOM05D005909 ORTHO05D007481 1.5e-140 503.4 385 64.2
Hund20744 Selenicereus undatus HOM05D005909 ORTHO05D007481 1.5e-140 503.4 383 62.9
CDE08G1136 Ceratophyllum demersum HOM05D005909 ORTHO05D007481 9.8e-140 500.7 381 64.6
SalBow8G3248 Salvia bowleyana HOM05D005909 ORTHO05D007481 2.2e-139 499.6 383 64.2
AUR62037268 Chenopodium quinoa HOM05D005909 ORTHO05D007481 8.3e-139 497.7 377 62.9
CsaV3_5G028790 Cucumis sativus L. HOM05D005909 ORTHO05D007481 1.4e-138 496.9 385 62.9
Sed0017467 Sechium edule HOM05D005909 ORTHO05D007481 5.4e-138 495.0 385 62.6
MSTRG.13555 Avicennia marina HOM05D005909 ORTHO05D007481 9.2e-138 494.2 385 63.6
AUR62002812 Chenopodium quinoa HOM05D005909 ORTHO05D007481 7.8e-137 491.1 377 62.3
SalBow8G0352 Salvia bowleyana HOM05D005909 ORTHO05D007481 1.7e-136 490.0 390 62.8
MELO3C005340.2 Cucumis melo HOM05D005909 ORTHO05D007481 3.9e-136 488.8 385 61.8
Lj6A753G52 Lonicera japonica HOM05D005909 ORTHO05D007481 8.6e-136 487.6 385 63.4
ATR0807G244 Amborella trichopoda HOM05D005909 ORTHO05D007481 1.6e-134 483.4 383 61.9
EL10Ac6g14305 Beta vulgaris HOM05D005909 ORTHO05D007481 2.1e-134 483.0 377 60.2
Zm00001eb360650 Zea mays HOM05D005909 ORTHO05D007481 4.0e-133 478.8 383 62.1
Cpa.g.sc65.66 Carica papaya HOM05D005909 ORTHO05D007481 5.2e-133 478.4 385 63.1
HPP92_024514 Vanilla planifolia HOM05D005909 ORTHO05D007481 3.4e-132 475.7 377 63.1
Haze_00654 Corylus avellana HOM05D005909 ORTHO05D007481 6.4e-131 471.5 517 50.5
Dinv16136 Davidia involucrata HOM05D005909 ORTHO05D007481 8.4e-131 471.1 384 63.0
PSO063G1187 Papaver somniferum HOM05D005909 ORTHO05D007481 2.4e-130 469.5 348 67.8
unitig_699.g19483 Utricularia gibba HOM05D005909 ORTHO05D007481 3.0e-128 462.6 383 61.9
Migut.E00369 Erythranthe guttata HOM05D005909 ORTHO05D007481 1.2e-126 457.2 432 55.8
Ah.03g138370 Amaranthus hybridus HOM05D005909 ORTHO05D007481 4.7e-126 455.3 356 62.4
Peaxi162Scf00179g00534 Petunia axillaris HOM05D005909 ORTHO05D007481 7.6e-124 448.0 385 60.5
Manes.06G064900 Manihot esculenta HOM05D005909 ORTHO05D007481 7.8e-121 438.0 309 68.6
Thecc.02G222000 Theobroma cacao HOM05D005909 ORTHO05D007481 2.5e-119 433.0 311 69.8
ClCG01G005900 Citrullus lanatus HOM05D005909 ORTHO05D007481 7.3e-119 431.4 385 57.9
FAN07G1481 Fragaria x ananassa HOM05D005909 ORTHO05D007481 3.6e-118 429.1 352 61.4
Carub.0005s0021 Capsella rubella HOM05D005909 ORTHO05D007481 3.4e-116 422.5 272 78.7
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 2.2e-115 419.9 380 54.5
Mapoly0100s0051 Marchantia polymorpha HOM05D005909 ORTHO05D007481 1.2e-113 414.1 381 54.9
Pp3c3_16750 Physcomitrium patens HOM05D005909 ORTHO05D007481 4.8e-110 402.1 383 53.0
SMO196G0003 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 6.9e-109 398.3 400 51.5
Pp3c12_7340 Physcomitrium patens HOM05D005909 ORTHO05D007481 2.6e-108 396.4 380 52.4
FAN12G0127 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.7e-107 393.7 291 66.0
FAN22G0620 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.0e-104 384.4 291 64.6
Actinidia16683 Actinidia chinensis HOM05D005909 ORTHO05D007481 3.9e-104 382.5 313 64.5
Oeu027686.1 Olea europaea HOM05D005909 ORTHO05D007481 8.7e-104 381.3 391 53.5
FAN12G0185 Fragaria x ananassa HOM05D005909 ORTHO05D007481 2.8e-102 376.3 306 61.8
Dinv31596 Davidia involucrata HOM05D005909 ORTHO05D007481 9.3e-98 361.3 331 57.4
CANSAT01G0643 Cannabis sativa HOM05D005909 ORTHO05D007481 2.5e-95 353.2 265 64.2
Carub.0005s0593 Capsella rubella HOM05D005909 ORTHO05D007481 2.8e-94 349.7 222 83.3
FAN17G2694 Fragaria x ananassa HOM05D005909 ORTHO05D007481 3.3e-87 326.2 380 49.5
TAR622G0977 Trochodendron aralioides HOM05D005909 ORTHO05D007481 1.3e-86 324.3 233 67.8
Os01g0691500 Oryza sativa ssp. japonica HOM05D005909 ORTHO05D007481 4.8e-86 322.4 270 60.4
SGA_v2.0_scaffold14G06904 Striga asiatica HOM05D005909 ORTHO05D007481 2.4e-77 293.5 235 63.4
MCO06G004 Micromonas commoda HOM05D005909 ORTHO05D007481 5.0e-59 232.6 395 35.7
Cre06.g278116 Chlamydomonas reinhardtii HOM05D005909 ORTHO05D007481 1.2e-55 221.5 433 35.6
SGA_v2.0_scaffold14G06901 Striga asiatica HOM05D005909 ORTHO05D007481 1.7e-54 217.6 147 69.4
PGSC0003DMG401030529 Solanum tuberosum HOM05D005909 ORTHO05D007481 4.1e-53 213.0 153 70.6
PRCOL_00006609 Prasinoderma coloniale HOM05D005909 ORTHO05D007481 5.4e-53 212.6 429 33.8
SEGI_08541 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 8.3e-46 188.7 152 59.9
Oeu027687.1 Olea europaea HOM05D005909 ORTHO05D007481 8.0e-41 172.2 115 73.9
SEGI_29486 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 5.6e-34 149.4 107 64.5
CBR_g39317 Chara braunii HOM05D005909 ORTHO05D007481 4.0e-32 143.3 184 42.9
BcaC06g31323 Brassica carinata HOM05D005909 ORTHO05D007481 3.1e-24 117.1 68 86.8
SMO265G0018 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 3.2e-21 107.1 155 38.7
SMO163G0092 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 3.0e-19 100.5 150 39.3
CiPaw.05G241800 Carya illinoinensis HOM05D005909 ORTHO05D007481 2.5e-18 97.4 64 68.8
arahy.Tifrunner.gnm1.ann1.XNS652 Arachis hypogaea HOM05D005909 ORTHO05D007481 3.6e-17 93.6 147 39.5
SMO146G0235 Selaginella moellendorffii HOM05D020292 ORTHO05D030583 1.1e-13 82.0 112 39.3
CBR_g39316 Chara braunii HOM05D000019 ORTHO05D000002 3.2e-13 80.5 70 51.4
SEGI_32432 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 1.3e-11 75.1 69 53.6
TPR.G28941 Trifolium pratense HOM05D000324 ORTHO05D004875 9.6e-10 68.9 88 45.5
Gohir.D12G121400 Gossypium hirsutum HOM05D005909 ORTHO05D046826 1.6e-09 68.2 35 85.7
SMO199G0001 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 4.0e-08 63.5 89 37.1
Gorai.008G132300 Gossypium raimondii HOM05D005909 ORTHO05D046826 1.5e-07 61.6 34 79.4


User provided reference genes

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