Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G16940 Arabidopsis lyrata HOM05D005478 ORTHO05D006426 1.5e-107 392.9 200 100.0
AT3G27520 Arabidopsis thaliana HOM05D005478 ORTHO05D006426 2.5e-83 312.4 201 81.1
Carub.0005s0595 Capsella rubella HOM05D005478 ORTHO05D006426 1.3e-82 310.1 201 80.6
Sp2g16690 Schrenkiella parvula HOM05D005478 ORTHO05D006426 3.2e-70 268.9 201 71.6
Aa31LG2G5140 Aethionema arabicum HOM05D005478 ORTHO05D006426 6.3e-66 254.6 205 67.8
CARHR148890 Cardamine hirsuta HOM05D005478 ORTHO05D006426 2.9e-63 245.7 200 66.5
Thhalv10004961m.g Eutrema salsugineum HOM05D005478 ORTHO05D006426 1.3e-58 230.3 207 66.2
THA.LOC104825319 Tarenaya hassleriana HOM05D005478 ORTHO05D006426 5.9e-56 221.5 185 62.2
A06p41110 Brassica napus HOM05D005478 ORTHO05D006426 7.2e-54 214.5 188 62.8
BraA06t27034Z Brassica rapa HOM05D005478 ORTHO05D006426 7.2e-54 214.5 188 62.8
C07p36630 Brassica napus HOM05D005478 ORTHO05D006426 9.4e-54 214.2 191 61.3
BcaC06g30982 Brassica carinata HOM05D005478 ORTHO05D006426 2.7e-53 212.6 191 61.3
BcaC06g33809 Brassica carinata HOM05D005478 ORTHO05D006426 2.7e-53 212.6 191 60.7
BolC7t44179H Brassica oleracea HOM05D005478 ORTHO05D006426 4.7e-53 211.8 197 58.9
BcaB04g19441 Brassica carinata HOM05D005478 ORTHO05D006426 1.4e-52 210.3 191 62.8
BraA09t35982Z Brassica rapa HOM05D005478 ORTHO05D006426 2.0e-51 206.5 187 59.4
A09p03440 Brassica napus HOM05D005478 ORTHO05D006426 5.7e-51 204.9 187 58.8
BcaC04g23900 Brassica carinata HOM05D005478 ORTHO05D006426 6.5e-47 191.4 189 57.1
C09p03650 Brassica napus HOM05D005478 ORTHO05D006426 6.5e-47 191.4 189 57.1
BolC9t53284H Brassica oleracea HOM05D005478 ORTHO05D006426 2.5e-46 189.5 187 57.2
Thhalv10027961m.g Eutrema salsugineum HOM05D005478 ORTHO05D006426 1.6e-40 170.2 185 51.9
THA.LOC104825211 Tarenaya hassleriana HOM05D005478 ORTHO05D006426 6.6e-39 164.9 158 57.0
QL02p074001 Quercus lobata HOM05D005478 ORTHO05D006426 1.5e-38 163.7 185 48.1
Cpa.g.sc108.77 Carica papaya HOM05D005478 ORTHO05D006426 3.3e-38 162.5 190 48.9
TWI56G0849 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 7.3e-38 161.4 200 47.5
TWI12G0237 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 2.3e-36 156.4 189 47.1
TWI36G1604 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 4.0e-36 155.6 189 45.5
COL.COLO4_30424 Corchorus olitorius HOM05D005478 ORTHO05D006426 5.8e-35 151.8 202 43.1
CiPaw.04G029700 Carya illinoinensis HOM05D005478 ORTHO05D006426 9.8e-35 151.0 190 45.8
Hma1.2p1_0818F.1_g223270 Hydrangea macrophylla HOM05D005478 ORTHO05D006426 9.8e-35 151.0 183 48.1
Duzib160G0719 Durio zibethinus HOM05D005478 ORTHO05D006426 1.3e-34 150.6 194 41.8
GSVIVG01032384001 Vitis vinifera HOM05D005478 ORTHO05D006426 6.4e-34 148.3 188 47.3
CiPaw.03G045600 Carya illinoinensis HOM05D005478 ORTHO05D006426 4.1e-33 145.6 192 44.8
Ciclev10016916m.g Citrus clementina HOM05D005478 ORTHO05D006426 5.4e-33 145.2 185 44.9
Duzib235G1061 Durio zibethinus HOM05D005478 ORTHO05D006426 1.2e-32 144.1 195 46.2
VMungo0464G1533 Vigna mungo HOM05D005478 ORTHO05D006426 1.6e-32 143.7 185 45.9
Actinidia36124 Actinidia chinensis HOM05D005478 ORTHO05D006426 2.7e-32 142.9 188 46.8
Prupe.3G293900 Prunus persica HOM05D005478 ORTHO05D006426 3.5e-32 142.5 189 43.9
Manes.17G111100 Manihot esculenta HOM05D005478 ORTHO05D006426 4.6e-32 142.1 198 43.9
Ca_04142_v3 Cicer arietinum L. HOM05D005478 ORTHO05D006426 6.0e-32 141.7 185 43.8
Thecc.06G091700 Theobroma cacao HOM05D005478 ORTHO05D006426 7.8e-32 141.4 199 41.7
Cfa007338 Carpinus fangiana HOM05D005478 ORTHO05D006426 1.3e-31 140.6 192 44.8
Sabra16G0222600 Salix brachista HOM05D005478 ORTHO05D006426 2.3e-31 139.8 191 45.0
Lalb_Chr22g0360721 Lupinus albus HOM05D005478 ORTHO05D006426 3.0e-31 139.4 189 49.2
Medtr6g004420 Medicago truncatula HOM05D005478 ORTHO05D006426 3.9e-31 139.0 185 43.2
Potri.001G343200 Populus trichocarpa HOM05D005478 ORTHO05D006426 5.0e-31 138.7 191 44.5
Haze_14759 Corylus avellana HOM05D005478 ORTHO05D006426 3.3e-30 136.0 190 42.1
MSTRG.15534 Avicennia marina HOM05D005478 ORTHO05D006426 4.3e-30 135.6 185 48.1
unitig_88.g27693 Utricularia gibba HOM05D000631 ORTHO05D000524 9.5e-30 134.4 189 42.9
ClCG10G013780 Citrullus lanatus HOM05D005478 ORTHO05D006426 4.7e-29 132.1 187 42.2
CsaV3_3G042880 Cucumis sativus L. HOM05D005478 ORTHO05D006426 4.7e-29 132.1 188 39.9
MELO3C026588.2 Cucumis melo HOM05D005478 ORTHO05D006426 6.2e-29 131.7 187 40.1
AUR62028419 Chenopodium quinoa HOM05D005478 ORTHO05D006426 1.1e-28 131.0 191 41.4
Lsat_1_v5_gn_0_18280 Lactuca sativa HOM05D005478 ORTHO05D006426 1.1e-28 131.0 188 45.2
Duzib192G0894 Durio zibethinus HOM05D005478 ORTHO05D006426 1.4e-28 130.6 199 39.7
PGR142G0633 Punica granatum HOM05D005478 ORTHO05D006426 1.8e-28 130.2 189 42.3
TPR.G31952 Trifolium pratense HOM05D005478 ORTHO05D006426 1.8e-28 130.2 185 43.2
MD09G1022900 Malus domestica HOM05D005478 ORTHO05D006426 4.0e-28 129.0 188 39.9
Sc07g0003180 Simmondsia chinensis HOM05D005478 ORTHO05D006426 4.0e-28 129.0 202 43.1
Actinidia18441 Actinidia chinensis HOM05D005478 ORTHO05D006426 5.2e-28 128.6 186 41.9
Hund15527 Selenicereus undatus HOM05D005478 ORTHO05D006426 6.8e-28 128.3 195 40.5
AUR62041940 Chenopodium quinoa HOM05D005478 ORTHO05D006426 8.9e-28 127.9 185 42.2
DCAR_011260 Daucus carota HOM05D005478 ORTHO05D006426 8.9e-28 127.9 187 42.2
MSTRG.3284 Avicennia marina HOM05D005478 ORTHO05D006426 1.2e-27 127.5 185 43.8
Oeu033728.1 Olea europaea HOM05D005478 ORTHO05D006426 3.4e-27 125.9 185 43.8
Glyma.05G002400 Glycine max HOM05D005478 ORTHO05D006426 5.8e-27 125.2 179 44.1
Atru.chr6.2431 Acer truncatum HOM05D005478 ORTHO05D006426 1.7e-26 123.6 185 41.6
Actinidia05981 Actinidia chinensis HOM05D005478 ORTHO05D006426 2.2e-26 123.2 188 41.0
Rhsim10G0014600 Rhododendron simsii HOM05D005478 ORTHO05D006426 2.2e-26 123.2 191 42.4
Sed0022021 Sechium edule HOM05D005478 ORTHO05D006426 2.2e-26 123.2 201 39.3
Sopen02g038220 Solanum pennellii HOM05D005478 ORTHO05D006426 2.2e-26 123.2 188 41.5
Gohir.D09G082100 Gossypium hirsutum HOM05D005478 ORTHO05D006426 2.9e-26 122.9 195 37.9
Gorai.006G097900 Gossypium raimondii HOM05D005478 ORTHO05D006426 2.9e-26 122.9 194 37.6
SGA_v2.0_scaffold47G17517 Striga asiatica HOM05D005478 ORTHO05D006426 4.9e-26 122.1 192 41.7
Gohir.A09G082300 Gossypium hirsutum HOM05D005478 ORTHO05D006426 8.3e-26 121.3 200 38.0
Solyc02g093450.3 Solanum lycopersicum HOM05D005478 ORTHO05D006426 1.1e-25 120.9 188 41.0
Migut.K01412 Erythranthe guttata HOM05D005478 ORTHO05D006426 1.4e-25 120.6 190 40.5
FAN05G2721 Fragaria x ananassa HOM05D005478 ORTHO05D006426 1.9e-25 120.2 197 40.6
PGSC0003DMG400012636 Solanum tuberosum HOM05D005478 ORTHO05D006426 5.4e-25 118.6 188 41.0
FAN02G1690 Fragaria x ananassa HOM05D005478 ORTHO05D006426 7.0e-25 118.2 197 40.6
Peaxi162Scf00700g00430 Petunia axillaris HOM05D005478 ORTHO05D006426 9.2e-25 117.9 182 41.8
TAR371G0105 Trochodendron aralioides HOM05D005478 ORTHO05D006426 9.2e-25 117.9 182 37.9
Lj2g0025845 Lotus japonicus HOM05D005478 ORTHO05D006426 6.0e-24 115.2 185 39.5
CANSAT64G0255 Cannabis sativa HOM05D005478 ORTHO05D006426 7.8e-24 114.8 201 36.8
FvH4_6g51790 Fragaria vesca HOM05D005478 ORTHO05D006426 7.8e-24 114.8 198 38.9
FAN14G4849 Fragaria x ananassa HOM05D005478 ORTHO05D006426 1.3e-23 114.0 198 38.9
FAN09G1593 Fragaria x ananassa HOM05D005478 ORTHO05D006426 1.7e-23 113.6 198 38.9
Psat1g053440 Pisum sativum HOM05D005478 ORTHO05D006426 2.3e-23 113.2 186 40.9
arahy.Tifrunner.gnm1.ann1.47572L Arachis hypogaea HOM05D005478 ORTHO05D006426 5.0e-23 112.1 193 36.8
Eucgr.I01730 Eucalyptus grandis HOM05D005478 ORTHO05D006426 6.6e-23 111.7 200 36.5
TAR629G3442 Trochodendron aralioides HOM05D005478 ORTHO05D006426 8.6e-23 111.3 186 37.6
Glyma.19G002600 Glycine max HOM05D005478 ORTHO05D006426 1.1e-22 110.9 183 40.4
MD17G1022200 Malus domestica HOM05D005478 ORTHO05D006426 1.5e-22 110.5 188 38.3
ATR0824G160 Amborella trichopoda HOM05D005478 ORTHO05D006426 4.3e-22 109.0 179 36.3
CSS0007505 Camellia sinensis var. sinensis HOM05D005478 ORTHO05D006426 4.3e-22 109.0 188 37.2
Oeu048609.1 Olea europaea HOM05D005478 ORTHO05D006426 4.3e-22 109.0 185 40.5
vmacro05877 Vaccinium macrocarpon HOM05D005478 ORTHO05D006426 1.6e-21 107.1 215 36.7
Phvul.004G004600 Phaseolus vulgaris HOM05D005478 ORTHO05D006426 2.8e-21 106.3 189 36.0
HPP92_006182 Vanilla planifolia HOM05D005478 ORTHO05D006426 1.1e-20 104.4 187 37.4
Lalb_Chr24g0403571 Lupinus albus HOM05D005478 ORTHO05D006426 1.8e-20 103.6 190 37.4
RcHm_v2.0_Chr2g0173291 Rosa chinensis HOM05D005478 ORTHO05D006426 2.3e-20 103.2 184 38.6
Aqoxy5G03740 Aquilegia oxysepala HOM05D005478 ORTHO05D006426 5.2e-20 102.1 187 34.8
HanXRQChr07g0199031 Helianthus annuus HOM05D005478 ORTHO05D006426 2.0e-19 100.1 187 35.3
vmacro18294 Vaccinium macrocarpon HOM05D005478 ORTHO05D006426 2.0e-19 100.1 228 35.1
Nn3g16686 Nelumbo nucifera HOM05D005478 ORTHO05D006426 2.6e-19 99.8 186 35.5
SGA_v2.0_scaffold30G12408 Striga asiatica HOM05D005478 ORTHO05D006426 3.4e-19 99.4 187 35.8
arahy.Tifrunner.gnm1.ann1.WAXE9D Arachis hypogaea HOM05D005478 ORTHO05D006426 7.5e-19 98.2 207 32.9
Lsat_1_v5_gn_2_91160 Lactuca sativa HOM05D005478 ORTHO05D006426 2.2e-18 96.7 183 37.2
Ah.02g128220 Amaranthus hybridus HOM05D005478 ORTHO05D006426 6.4e-18 95.1 184 34.8
CDE09G0806 Ceratophyllum demersum HOM05D005478 ORTHO05D006426 6.4e-18 95.1 187 32.6
PSO478G1356 Papaver somniferum HOM05D005478 ORTHO05D006426 8.3e-18 94.7 187 35.3
PSO017G4510 Papaver somniferum HOM05D005478 ORTHO05D006426 4.1e-17 92.4 185 35.7
ECA238G3024 Erigeron canadensis HOM05D005478 ORTHO05D006426 5.4e-17 92.0 186 33.9
CDE02G4674 Ceratophyllum demersum HOM05D005478 ORTHO05D006426 2.7e-16 89.7 186 31.7
HanXRQChr14g0451171 Helianthus annuus HOM05D005478 ORTHO05D006426 1.0e-15 87.8 183 33.3
MBI14_g36718_MAGBIO Magnolia biondii HOM05D005478 ORTHO05D006426 3.0e-15 86.3 182 34.1
PSO754G0087 Papaver somniferum HOM05D005478 ORTHO05D006426 3.0e-15 86.3 184 30.4
PSO063G0871 Papaver somniferum HOM05D005478 ORTHO05D006426 6.6e-15 85.1 184 31.5
SEGI_00200 Sequoiadendron giganteum HOM05D005478 ORTHO05D006426 2.5e-14 83.2 179 32.4
Aqoxy1G02464 Aquilegia oxysepala HOM05D005478 ORTHO05D006426 3.3e-14 82.8 166 33.1
Gohir.D05G130900 Gossypium hirsutum HOM05D005478 ORTHO05D006426 7.6e-11 71.6 129 37.2
Aa31sc17G60 Aethionema arabicum HOM05D005478 ORTHO05D006426 7.1e-09 65.1 73 54.8
Dinv33426 Davidia involucrata HOM05D005478 ORTHO05D006426 7.1e-09 65.1 54 59.3
Cc07_g01510 Coffea canephora HOM05D005478 ORTHO05D006426 6.0e-08 62.0 67 44.8
Dinv25725 Davidia involucrata HOM05D005478 ORTHO05D006426 7.8e-08 61.6 84 44.0
Os02g0595300 Oryza sativa ssp. japonica HOM05D005478 ORTHO05D006426 1.7e-07 60.5 186 24.7
EL10Ac6g14100 Beta vulgaris HOM05D005478 ORTHO05D006426 2.3e-07 60.1 99 41.4
Lju41C43G9 Lonicera japonica HOM05D005478 ORTHO05D006426 3.9e-07 59.3 96 39.6
Nitab4.5_0005593g0050 Nicotiana tabacum HOM05D005478 ORTHO05D006426 3.9e-07 59.3 169 26.0
Nn3g16214 Nelumbo nucifera HOM05D005478 ORTHO05D006426 5.1e-07 58.9 50 50.0
Oeu018990.1 Olea europaea HOM05D005478 ORTHO05D006426 1.5e-06 57.4 83 42.2
Nn8g38687 Nelumbo nucifera HOM05D046178 ORTHO05D006426 4.3e-06 55.8 60 51.7
Nitab4.5_0000326g0190 Nicotiana tabacum HOM05D006502 ORTHO05D007704 5.6e-06 55.5 82 32.9


User provided reference genes

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