Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 0.0e+00 2116.3 1087 100.0
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 0.0e+00 2044.6 1087 95.9
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1993.8 1095 92.1
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 1929.5 1095 89.4
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1915.2 1096 88.7
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1911.7 1100 88.5
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1909.8 1104 88.2
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1909.8 1104 88.2
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1906.7 1095 88.0
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1906.0 1105 87.9
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 0.0e+00 1904.8 1095 89.3
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1884.4 1096 88.1
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1847.4 1103 86.6
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1841.2 1087 87.1
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1837.0 1089 86.8
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1832.4 1110 85.9
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 0.0e+00 1789.2 1121 82.2
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1673.3 1110 76.5
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1360.9 1111 62.7
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1357.8 1102 63.4
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1347.0 1112 63.4
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1340.5 1111 62.6
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1340.1 1119 62.0
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1334.7 1124 62.8
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1332.4 1102 63.3
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1329.7 1090 63.3
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1325.1 1073 63.1
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1322.4 1107 62.5
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1316.6 1164 58.9
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1312.0 1102 61.7
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1311.6 1115 61.3
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1306.6 1094 62.2
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1305.8 1094 62.2
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1305.0 1116 61.8
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1296.2 1124 62.0
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1289.2 1115 60.6
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1287.3 1107 60.9
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1286.9 1115 60.3
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1283.1 1052 63.1
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1281.2 1108 60.4
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1280.0 1114 60.3
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1273.5 1119 59.1
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1273.1 1095 60.4
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1267.3 1124 58.7
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 1266.5 1118 58.5
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1266.1 1123 58.5
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1266.1 1108 59.7
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1266.1 1106 59.7
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1265.4 1109 59.9
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1263.8 1119 59.5
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1261.9 1109 59.3
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1261.5 1118 58.6
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1261.5 1118 58.4
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1259.6 1173 57.8
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1258.0 1111 59.4
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1253.0 1109 58.6
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 1252.3 1115 58.3
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1252.3 1111 58.6
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1251.1 1111 58.6
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1242.3 1075 59.5
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1240.7 1118 57.8
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1239.9 1110 58.2
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1238.4 1091 58.9
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1236.5 1103 58.2
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1234.6 1104 58.2
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1232.2 1142 58.3
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1231.5 1092 58.6
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1226.8 1125 58.6
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1226.5 1105 57.6
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1218.8 1117 57.7
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1214.5 1112 58.4
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1214.1 1129 56.3
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1214.1 1079 58.6
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1213.4 1129 56.4
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1213.4 1084 58.9
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1211.4 1112 56.4
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1210.7 1087 58.2
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1206.8 1101 57.2
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1202.2 1129 58.0
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1199.1 1103 56.8
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1198.3 1089 58.9
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1197.6 1116 56.4
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1187.2 1093 56.9
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1185.2 1102 56.7
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1177.9 910 65.5
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1172.1 1119 55.7
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1171.0 1100 56.6
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1164.1 1191 53.0
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1162.1 1102 55.8
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1159.8 1147 53.2
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 0.0e+00 1136.3 1099 54.4
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1135.9 954 62.1
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 0.0e+00 1130.5 986 61.2
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1117.8 1009 59.4
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 1102.4 1108 52.3
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 0.0e+00 1089.3 1150 52.5
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1087.8 1174 50.9
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 0.0e+00 1086.2 951 60.5
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1080.1 992 56.2
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 1.5e-311 1072.8 937 60.6
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 1.1e-310 1070.1 789 68.3
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 7.4e-310 1067.4 839 63.8
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 3.8e-306 1055.0 962 57.7
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 4.9e-306 1054.7 1093 52.8
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 2.6e-291 1005.7 1096 50.7
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 4.9e-290 1001.5 724 68.2
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 2.0e-278 963.0 902 56.5
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 9.1e-276 954.1 1124 47.7
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 3.9e-263 912.1 1102 46.3
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 2.0e-262 909.8 1030 50.3
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 3.6e-256 889.0 632 69.9
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 7.2e-249 864.8 1004 47.8
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 2.6e-246 856.3 1132 44.1
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 1.5e-233 813.9 800 55.4
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 2.0e-230 803.5 1074 42.2
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 1.7e-213 747.3 815 50.2
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 3.1e-183 646.7 961 40.8
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 6.7e-170 602.4 1086 36.9
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 1.4e-151 541.6 397 67.3
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 2.9e-149 533.9 1107 34.6
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 2.7e-147 527.3 445 59.3
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 2.9e-141 507.3 512 53.7
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 8.3e-112 409.5 330 61.5
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 8.3e-104 382.9 322 57.8
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 8.1e-99 366.3 1187 27.1
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 1.8e-90 338.6 235 78.7
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 5.2e-90 337.0 235 78.3
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 1.6e-86 325.5 235 77.4
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 9.6e-76 289.7 218 67.4
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 2.4e-74 285.0 515 36.5
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 2.5e-63 248.4 351 42.7
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.4e-58 232.6 246 52.0
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.4e-55 222.6 260 50.0
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 6.3e-51 207.2 368 37.5
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 4.1e-50 204.5 255 48.2
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 5.9e-49 200.7 269 46.1
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.0e-45 189.9 231 48.9
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.2e-41 176.4 223 45.3
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.0e-41 175.6 223 45.3
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.0e-41 175.6 223 45.3
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.0e-41 175.6 223 45.3
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 4.5e-41 174.5 432 31.7
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 7.7e-41 173.7 223 44.8
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.3e-37 162.2 272 39.7
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.3e-32 146.4 223 40.8
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 2.2e-32 145.6 143 53.1
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 2.5e-31 142.1 201 43.8
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 8.0e-30 137.1 358 28.2
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.6e-22 112.8 97 62.9
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 2.8e-19 102.1 300 28.7
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 2.0e-17 95.9 126 44.4
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 7.7e-17 94.0 79 58.2
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 1.3e-16 93.2 58 67.2
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 5.0e-16 91.3 76 59.2
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.5e-15 89.7 240 30.0
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.8e-10 72.8 72 50.0
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 4.5e-09 68.2 99 42.4


User provided reference genes

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