Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 8.5e-123 443.7 231 100.0
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 1.9e-114 416.0 231 93.5
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 2.2e-110 402.5 231 91.3
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 1.2e-105 386.7 231 87.4
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 3.6e-105 385.2 231 86.1
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 4.1e-101 371.7 231 83.1
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 6.5e-99 364.4 220 84.5
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 4.2e-98 361.7 220 83.6
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 4.2e-98 361.7 220 83.6
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 2.3e-96 355.9 218 83.0
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 2.3e-96 355.9 218 83.0
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 3.5e-92 342.0 231 80.5
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 7.7e-92 340.9 245 74.7
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 3.6e-73 278.9 231 61.9
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 4.7e-73 278.5 234 63.2
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 4.7e-73 278.5 229 62.4
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 1.8e-72 276.6 229 64.6
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 5.2e-72 275.0 234 62.8
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 8.9e-72 274.2 229 62.4
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 2.6e-71 272.7 226 62.8
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 7.5e-71 271.2 234 61.5
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 9.8e-71 270.8 236 61.4
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 1.3e-70 270.4 228 62.3
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 2.2e-70 269.6 229 61.6
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 4.9e-70 268.5 224 62.9
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 8.3e-70 267.7 236 61.9
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 1.1e-69 267.3 235 63.4
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 1.1e-69 267.3 232 65.1
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 1.4e-69 266.9 234 60.7
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 2.4e-69 266.2 226 62.8
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 4.1e-69 265.4 238 61.3
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 7.0e-69 264.6 229 60.7
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 9.2e-69 264.2 233 61.8
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 1.2e-68 263.8 231 60.2
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 2.0e-68 263.1 232 59.1
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 2.0e-68 263.1 229 59.8
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 2.7e-68 262.7 236 61.4
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 2.7e-68 262.7 236 61.0
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 2.7e-68 262.7 229 59.8
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 3.5e-68 262.3 232 62.1
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 4.6e-68 261.9 231 58.4
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 6.0e-68 261.5 227 62.6
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 6.0e-68 261.5 255 54.5
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 7.8e-68 261.2 227 62.6
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 7.8e-68 261.2 230 59.6
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 7.8e-68 261.2 234 59.8
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 1.0e-67 260.8 228 63.2
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 1.0e-67 260.8 236 61.9
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 1.3e-67 260.4 234 60.7
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 1.3e-67 260.4 233 61.8
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 1.3e-67 260.4 234 61.1
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 3.0e-67 259.2 262 56.1
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 3.0e-67 259.2 237 58.6
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 3.9e-67 258.8 227 60.8
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 5.0e-67 258.5 231 61.5
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 5.0e-67 258.5 234 61.1
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 5.0e-67 258.5 233 60.1
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 8.6e-67 257.7 234 60.7
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 8.6e-67 257.7 231 58.9
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 1.5e-66 256.9 232 61.6
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 3.3e-66 255.8 232 61.6
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 3.3e-66 255.8 230 58.7
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 3.3e-66 255.8 237 60.3
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 3.3e-66 255.8 228 60.5
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 4.3e-66 255.4 229 60.3
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 9.5e-66 254.2 227 58.1
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 9.5e-66 254.2 236 60.6
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 9.5e-66 254.2 234 59.0
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 1.6e-65 253.4 235 60.4
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 2.8e-65 252.7 222 59.0
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 2.8e-65 252.7 230 60.4
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 8.0e-65 251.1 235 60.0
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 1.4e-64 250.4 228 60.1
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 1.8e-64 250.0 230 58.7
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 2.3e-64 249.6 224 60.3
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 3.1e-64 249.2 228 56.6
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 6.8e-64 248.1 230 58.7
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.2e-63 247.3 234 58.5
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 1.2e-63 247.3 228 58.8
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 1.5e-63 246.9 234 59.0
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 2.0e-63 246.5 231 58.9
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 2.6e-63 246.1 236 58.1
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 3.4e-63 245.7 231 59.7
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 4.4e-63 245.4 234 58.1
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 5.8e-63 245.0 190 65.3
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 7.5e-63 244.6 225 58.7
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 9.8e-63 244.2 234 57.3
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 1.3e-62 243.8 234 58.1
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 2.2e-62 243.0 230 55.7
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 2.9e-62 242.7 232 57.8
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 2.9e-62 242.7 234 56.4
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 4.9e-62 241.9 239 54.8
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 1.1e-61 240.7 234 57.3
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 1.4e-61 240.4 229 58.5
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.9e-61 240.0 235 57.9
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 1.9e-61 240.0 230 55.2
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 1.9e-61 240.0 226 56.2
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 3.2e-61 239.2 222 60.4
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 4.1e-61 238.8 235 55.3
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 5.4e-61 238.4 214 59.8
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 5.4e-61 238.4 234 57.7
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 7.0e-61 238.0 235 57.4
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 1.2e-60 237.3 206 62.6
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 4.6e-60 235.3 235 56.2
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 3.0e-59 232.6 261 52.5
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 3.0e-59 232.6 261 52.9
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 8.6e-59 231.1 228 57.0
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 1.9e-58 229.9 230 56.5
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 1.9e-58 229.9 230 56.5
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 9.5e-58 227.6 226 55.3
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 2.1e-57 226.5 232 53.9
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 3.6e-57 225.7 227 55.1
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 1.1e-56 224.2 162 70.4
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 6.8e-56 221.5 161 70.2
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 2.0e-55 219.9 186 61.8
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 3.4e-55 219.2 178 64.6
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 3.7e-54 215.7 168 68.5
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 2.4e-53 213.0 232 50.0
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 2.4e-53 213.0 239 52.7
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 9.2e-53 211.1 204 54.9
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 3.5e-52 209.1 227 53.3
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 3.5e-52 209.1 232 50.4
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 6.8e-48 194.9 236 48.3
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 4.4e-47 192.2 232 48.7
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 2.9e-46 189.5 141 66.0
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 8.4e-46 188.0 232 45.3
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 2.7e-44 183.0 159 59.1
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 2.3e-43 179.9 230 47.0
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 3.6e-41 172.6 121 69.4
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 6.2e-41 171.8 129 62.0
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 8.1e-41 171.4 165 55.8
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 4.0e-40 169.1 248 47.2
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 6.6e-35 151.8 118 70.3
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 6.6e-35 151.8 125 63.2
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 6.6e-35 151.8 125 63.2
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 6.6e-35 151.8 125 63.2
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 1.1e-34 151.0 169 56.2
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 1.9e-34 150.2 243 38.7
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 6.2e-33 145.2 234 40.6
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 1.1e-32 144.4 176 50.6
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 1.6e-28 130.6 86 69.8
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 6.7e-27 125.2 127 54.3
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 8.7e-27 124.8 100 66.0
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 2.5e-26 123.2 127 54.3
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.6e-25 120.6 127 53.5
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 1.6e-25 120.6 147 47.6
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 6.2e-25 118.6 132 48.5
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 7.9e-20 101.7 114 48.2
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 2.4e-16 90.1 137 48.2
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 2.9e-14 83.2 259 29.7
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 3.2e-13 79.7 192 32.8
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 2.7e-12 76.6 99 45.5
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 1.5e-10 70.9 59 66.1
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 3.3e-10 69.7 47 63.8
C09p03590 Brassica napus HOM05D004631 ORTHO05D005223 1.3e-09 67.8 36 83.3
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 2.8e-09 66.6 74 51.4
Cre10.g443650 Chlamydomonas reinhardtii HOM05D004631 ORTHO05D005223 2.2e-06 57.0 109 34.9
SMO361G0571 Selaginella moellendorffii HOM05D018282 ORTHO05D005223 8.5e-06 55.1 49 59.2


User provided reference genes

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