Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 3.3e-220 768.1 395 100.0
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 4.5e-201 704.5 371 93.5
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 1.5e-199 699.5 400 91.2
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.7e-192 676.0 401 87.0
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 3.6e-190 668.3 404 87.6
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 4.6e-185 651.4 398 86.2
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 6.0e-185 651.0 398 86.2
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 6.0e-185 651.0 398 86.2
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 3.3e-183 645.2 402 85.1
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 7.3e-183 644.0 403 84.9
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 7.8e-177 624.0 379 84.7
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 2.6e-172 609.0 420 77.9
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 9.2e-170 600.5 409 80.0
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 1.9e-162 576.2 413 75.8
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.5e-159 566.6 420 74.0
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 1.4e-154 550.1 421 71.0
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 2.1e-153 546.2 434 70.0
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 3.3e-151 538.9 413 71.9
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 5.6e-151 538.1 418 71.8
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 3.7e-150 535.4 414 72.0
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 6.2e-150 534.6 422 70.1
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 2.0e-148 529.6 405 71.9
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 9.9e-148 527.3 409 71.6
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 6.7e-144 514.6 422 68.2
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 2.8e-142 509.2 431 65.2
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 2.8e-142 509.2 407 71.3
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 3.1e-141 505.8 411 69.1
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 3.1e-141 505.8 424 67.5
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 1.2e-140 503.8 418 66.0
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 2.0e-140 503.1 389 68.4
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 5.8e-140 501.5 412 70.6
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 7.6e-140 501.1 412 70.4
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 1.3e-139 500.4 422 65.2
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 2.9e-139 499.2 435 64.6
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 6.5e-139 498.0 392 67.3
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 1.4e-138 496.9 411 68.9
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 2.5e-138 496.1 419 63.5
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 3.2e-138 495.7 418 63.2
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 7.1e-138 494.6 429 64.1
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 9.3e-138 494.2 386 66.6
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 1.2e-137 493.8 395 65.1
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 2.1e-137 493.0 433 65.6
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 3.5e-137 492.3 433 65.4
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 4.6e-137 491.9 384 65.6
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 4.6e-137 491.9 414 65.5
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 6.0e-137 491.5 418 69.1
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 6.0e-137 491.5 422 63.0
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 7.9e-137 491.1 400 66.5
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 1.3e-136 490.3 380 65.3
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 2.3e-136 489.6 400 65.8
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 2.3e-136 489.6 372 66.9
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 3.9e-136 488.8 428 65.4
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 6.7e-136 488.0 426 64.1
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 6.7e-136 488.0 383 65.0
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 1.1e-135 487.3 426 62.9
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 1.1e-135 487.3 418 66.5
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 3.3e-135 485.7 441 63.7
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 4.3e-135 485.3 430 64.2
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 7.4e-135 484.6 421 65.3
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 8.2e-134 481.1 397 64.2
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 1.1e-133 480.7 384 66.9
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 1.8e-133 479.9 425 63.5
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 3.1e-133 479.2 421 63.2
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 4.1e-133 478.8 393 65.1
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 4.1e-133 478.8 389 64.3
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 6.9e-133 478.0 430 63.0
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 9.0e-133 477.6 427 63.7
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 9.0e-133 477.6 427 63.7
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.5e-132 476.9 426 63.8
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 2.0e-132 476.5 395 64.1
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.0e-132 476.5 427 63.5
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 3.4e-132 475.7 428 62.1
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 7.6e-132 474.6 397 64.7
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 3.8e-131 472.2 433 61.4
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 5.0e-131 471.9 386 64.8
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 5.0e-131 471.9 435 60.5
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 6.5e-131 471.5 398 63.6
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 6.5e-131 471.5 398 63.6
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 1.1e-130 470.7 423 64.1
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.4e-130 470.3 398 63.3
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.5e-130 469.5 427 63.0
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 7.2e-130 468.0 388 64.7
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 1.6e-129 466.8 426 61.5
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 2.7e-129 466.1 383 63.2
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 4.6e-129 465.3 423 62.4
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 6.1e-129 464.9 426 62.2
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 7.9e-129 464.5 433 63.5
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 3.0e-128 462.6 451 59.4
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 1.9e-127 459.9 425 62.1
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 2.5e-127 459.5 424 62.5
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 2.5e-127 459.5 426 60.8
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 7.4e-127 458.0 391 61.4
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 9.7e-127 457.6 412 63.3
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 2.2e-126 456.4 430 60.7
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 1.8e-125 453.4 394 61.4
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 5.3e-125 451.8 420 59.5
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 1.7e-123 446.8 397 60.2
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 2.9e-123 446.0 402 60.4
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 2.1e-121 439.9 406 59.4
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 7.9e-121 438.0 361 62.3
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 3.0e-120 436.0 375 62.9
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 5.1e-120 435.3 424 58.3
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 6.7e-120 434.9 357 63.6
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 1.1e-119 434.1 402 60.2
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 7.4e-119 431.4 381 61.7
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 1.8e-117 426.8 428 58.4
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 2.4e-117 426.4 411 61.3
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 2.4e-117 426.4 435 59.1
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 1.2e-116 424.1 398 59.8
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.2e-113 414.1 415 54.5
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.8e-112 410.2 416 55.0
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 3.0e-112 409.5 416 54.8
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 5.9e-108 395.2 392 55.9
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 7.7e-108 394.8 363 58.7
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 6.5e-107 391.7 363 59.0
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 5.2e-104 382.1 449 51.0
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 1.4e-101 374.0 318 62.6
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 5.9e-100 368.6 363 55.1
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 4.2e-98 362.5 370 51.9
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 6.1e-97 358.6 392 49.7
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 2.4e-93 346.7 296 61.1
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.7e-84 316.6 289 58.5
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 3.3e-74 283.1 428 41.6
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 7.5e-71 271.9 239 61.1
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 2.5e-66 256.9 380 38.9
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 4.7e-65 252.7 297 46.1
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 8.3e-62 241.9 211 58.8
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 1.8e-56 224.2 219 53.9
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 5.2e-56 222.6 152 73.0
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 2.6e-55 220.3 220 55.9
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 2.9e-54 216.9 186 67.7
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 1.1e-53 214.9 149 73.2
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 3.5e-52 209.9 190 67.9
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 1.7e-46 191.0 194 55.7
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 1.9e-42 177.6 205 51.7
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 9.6e-42 175.3 294 36.7
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 3.1e-40 170.2 355 33.5
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 2.7e-20 104.0 111 54.1
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 4.3e-18 96.7 65 75.4
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 3.4e-15 87.0 75 54.7
C05p10420 Brassica napus HOM05D005312 ORTHO05D006459 5.3e-08 63.2 36 69.4
C08p14660 Brassica napus HOM05D023945 ORTHO05D042485 5.3e-08 63.2 47 61.7


User provided reference genes

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