Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 0.0e+00 1442.2 761 100.0
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 0.0e+00 1273.8 785 86.8
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 0.0e+00 1205.3 774 84.6
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 0.0e+00 1200.7 770 83.8
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 0.0e+00 1169.1 767 80.4
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 0.0e+00 1114.4 771 76.7
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 0.0e+00 1091.3 770 78.4
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 3.7e-300 1034.6 771 76.7
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 9.1e-299 1030.0 771 75.4
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 4.5e-290 1001.1 690 79.3
C02p53260 Brassica napus HOM05D006071 ORTHO05D007462 6.5e-289 997.3 771 73.5
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 3.0e-286 988.4 766 73.4
BolC2t11398H Brassica oleracea HOM05D006071 ORTHO05D007462 7.5e-285 983.8 768 72.9
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 5.6e-272 941.0 766 68.9
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 2.6e-197 693.0 770 52.7
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 2.1e-194 683.3 770 52.2
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 8.8e-193 677.9 773 51.6
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 3.7e-191 672.5 766 51.0
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 4.1e-190 669.1 821 49.9
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 9.1e-190 667.9 630 56.3
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 5.0e-188 662.1 643 56.6
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.9e-187 660.2 776 50.4
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 3.2e-187 659.4 733 53.2
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 1.4e-185 654.1 755 51.8
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 1.8e-185 653.7 783 50.7
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 3.0e-185 652.9 732 51.8
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 2.0e-184 650.2 781 50.6
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 4.4e-184 649.0 769 51.1
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 4.4e-184 649.0 647 54.9
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 9.7e-184 647.9 759 49.8
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 6.3e-183 645.2 756 51.3
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 5.3e-182 642.1 808 47.9
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 1.1e-179 634.4 735 49.3
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 2.5e-179 633.3 642 55.0
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 2.5e-179 633.3 637 53.7
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 7.2e-179 631.7 630 55.6
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 2.7e-178 629.8 759 49.3
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 3.6e-178 629.4 758 50.3
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 1.4e-177 627.5 649 55.2
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 1.8e-177 627.1 795 47.7
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 5.2e-177 625.5 615 55.9
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 1.5e-176 624.0 643 54.9
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 2.0e-176 623.6 602 56.3
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 3.4e-176 622.9 630 54.8
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 4.4e-176 622.5 622 55.1
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 7.0e-174 615.1 716 50.3
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 9.1e-174 614.8 745 48.9
MD09G1003000 Malus domestica HOM05D006071 ORTHO05D007462 3.5e-173 612.8 668 51.3
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 1.0e-172 611.3 644 53.9
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 6.5e-172 608.6 648 52.3
Sabra14G0109500 Salix brachista HOM05D006071 ORTHO05D007462 1.4e-169 600.9 680 51.0
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 1.8e-169 600.5 635 54.3
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 2.3e-169 600.1 580 56.2
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 3.0e-169 599.7 726 49.0
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 5.2e-169 599.0 639 52.7
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 1.1e-166 591.3 644 52.8
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 1.1e-166 591.3 618 53.4
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 1.4e-166 590.9 619 53.5
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 1.4e-166 590.9 777 47.9
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 2.7e-165 586.6 777 47.1
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 1.7e-164 583.9 787 46.8
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 5.5e-163 578.9 786 46.6
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 2.8e-162 576.6 616 51.8
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 1.8e-161 573.9 644 52.0
FvH4_6g54271 Fragaria vesca HOM05D006071 ORTHO05D007462 2.3e-161 573.5 665 49.9
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 2.6e-160 570.1 745 47.9
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 4.4e-160 569.3 666 49.8
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 5.7e-160 568.9 638 50.9
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 5.7e-160 568.9 749 46.3
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 7.5e-160 568.5 617 50.9
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 1.3e-159 567.8 642 52.5
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 2.2e-159 567.0 645 50.7
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 2.8e-159 566.6 631 51.5
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 8.3e-159 565.1 616 51.6
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 2.4e-158 563.5 636 51.3
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 2.4e-158 563.5 789 45.8
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 9.2e-158 561.6 719 48.3
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 5.9e-157 558.9 647 49.5
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 3.9e-156 556.2 625 50.9
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 4.7e-154 549.3 771 44.4
Actinidia36244 Actinidia chinensis HOM05D000877 ORTHO05D001509 8.0e-154 548.5 551 53.9
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 1.7e-151 540.8 644 49.1
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 1.7e-151 540.8 745 45.9
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 3.9e-148 529.6 769 45.1
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 1.1e-147 528.1 764 44.9
Hma1.2p1_0421F.1_g149975 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 2.1e-146 523.9 483 55.7
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 5.2e-145 519.2 629 50.1
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 1.2e-144 518.1 625 48.8
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 4.4e-144 516.2 624 47.8
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 1.3e-140 504.6 820 42.2
Atru.chr6.2689 Acer truncatum HOM05D006071 ORTHO05D007462 1.3e-132 478.0 416 59.6
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 8.4e-127 458.8 627 45.3
unitig_0.g2406 Utricularia gibba HOM05D006071 ORTHO05D007462 1.2e-117 428.3 467 50.5
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 3.0e-116 423.7 497 51.1
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 1.1e-115 421.8 674 40.7
Hma1.2p1_0033F.1_g021090 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 1.8e-113 414.5 505 48.3
COL.COLO4_13369 Corchorus olitorius HOM05D006071 ORTHO05D007462 9.3e-110 402.1 578 45.0
AUR62041072 Chenopodium quinoa HOM05D006071 ORTHO05D007462 3.9e-108 396.7 397 53.4
Mapoly0006s0082 Marchantia polymorpha HOM05D006071 ORTHO05D007462 9.0e-105 385.6 628 38.5
SMO141G0304 Selaginella moellendorffii HOM05D006071 ORTHO05D007462 1.5e-104 384.8 658 38.8
Pp3c20_8910 Physcomitrium patens HOM05D006071 ORTHO05D007462 7.1e-94 349.4 726 35.1
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 9.7e-91 339.0 605 40.0
SHI11389 Sapria himalayana HOM05D006071 ORTHO05D007462 1.3e-82 312.0 407 44.5
CBR_g4363 Chara braunii HOM05D006071 ORTHO05D007462 3.7e-74 283.9 801 31.2
CSS0035612 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 1.3e-71 275.4 446 39.0
AagrBONN_evm.TU.Sc2ySwM_344.4297 Anthoceros agrestis HOM05D006071 ORTHO05D007462 9.4e-62 242.7 647 30.1
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 4.4e-59 233.8 384 43.8
Psat2g052360 Pisum sativum HOM05D006071 ORTHO05D007462 1.3e-47 195.7 430 35.1
Psat2g087400 Pisum sativum HOM05D006071 ORTHO05D007462 1.0e-44 186.0 332 41.0
AUR62041071 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.4e-41 175.6 223 49.3
CDE05G1324 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 7.8e-40 169.9 237 43.5
Cre03.g144687 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 7.8e-32 143.3 621 25.0
MCO15G395 Micromonas commoda HOM05D006071 ORTHO05D007462 4.3e-30 137.5 565 25.8
HanXRQChr17g0550951 Helianthus annuus HOM05D006071 ORTHO05D007462 2.0e-27 128.6 103 60.2
HanXRQChr17g0550971 Helianthus annuus HOM05D006071 ORTHO05D007462 3.7e-26 124.4 208 39.4
Psat0s2046g0080 Pisum sativum HOM05D006071 ORTHO05D007462 4.9e-26 124.0 144 50.7
Sc07g0003760 Simmondsia chinensis HOM05D006071 ORTHO05D007462 1.5e-19 102.4 118 47.5
Psat0s2046g0120 Pisum sativum HOM05D006071 ORTHO05D007462 1.4e-17 95.9 89 53.9
Psat2g087520 Pisum sativum HOM05D006071 ORTHO05D007462 5.4e-17 94.0 142 47.2
Lj1g0013684 Lotus japonicus HOM05D006071 ORTHO05D007462 1.6e-16 92.4 105 48.6
Atru.chr6.2690 Acer truncatum HOM05D006071 ORTHO05D007462 1.3e-15 89.4 211 37.4
Cre16.g681251 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 1.4e-12 79.3 176 31.2
Actinidia09844 Actinidia chinensis HOM05D006071 ORTHO05D007462 2.9e-10 71.6 45 73.3
Actinidia09845 Actinidia chinensis HOM05D006071 ORTHO05D007462 1.9e-09 68.9 111 36.9
Atru.chr6.2688 Acer truncatum HOM05D006071 ORTHO05D007462 3.2e-09 68.2 98 48.0
CDE05G2071 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 1.3e-07 62.8 111 42.3
ClCG11G018130 Citrullus lanatus HOM05D000463 ORTHO05D001294 1.5e-06 59.3 60 38.3
MELO3C016706.2 Cucumis melo HOM05D000463 ORTHO05D001294 7.3e-06 57.0 60 35.0
CsaV3_4G033770 Cucumis sativus L. HOM05D000463 ORTHO05D001294 7.3e-06 57.0 60 35.0
Sed0026724 Sechium edule HOM05D000463 ORTHO05D001294 7.3e-06 57.0 60 33.3
Sc19g0006060 Simmondsia chinensis HOM05D000463 ORTHO05D004638 9.6e-06 56.6 100 32.0


User provided reference genes

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