Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 8.0e-285 983.0 478 100.0
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 8.6e-279 963.0 478 97.7
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 1.1e-278 962.6 478 97.7
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 1.3e-274 949.1 478 96.0
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 5.4e-273 943.7 480 96.2
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 1.6e-272 942.2 478 95.2
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 1.4e-265 919.1 478 92.5
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 4.1e-265 917.5 478 92.7
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 5.4e-265 917.1 478 92.9
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 5.4e-265 917.1 479 93.5
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 5.4e-265 917.1 479 93.5
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 7.1e-265 916.8 479 93.3
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 4.6e-264 914.1 479 93.1
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 4.7e-261 904.0 502 88.2
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 4.4e-259 897.5 478 90.8
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 1.0e-247 859.8 502 85.5
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 6.6e-247 857.1 490 87.1
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 8.7e-231 803.5 479 81.2
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 2.5e-225 785.4 410 92.4
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 9.0e-220 766.9 484 75.6
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 1.5e-219 766.1 484 75.4
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 2.0e-219 765.8 486 75.5
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 4.5e-219 764.6 484 75.8
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 5.8e-219 764.2 484 75.6
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 2.9e-218 761.9 480 75.4
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 2.9e-218 761.9 488 74.0
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 3.8e-218 761.5 480 75.8
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 8.4e-218 760.4 491 73.7
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 1.4e-217 759.6 478 75.3
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 2.5e-217 758.8 486 74.1
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 4.2e-217 758.1 482 73.9
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 5.5e-217 757.7 483 72.9
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 7.1e-217 757.3 484 74.4
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 9.3e-217 756.9 482 73.4
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 1.6e-216 756.1 486 73.5
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 2.1e-216 755.7 479 74.7
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 2.1e-216 755.7 494 73.5
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 7.9e-216 753.8 479 74.5
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.0e-215 753.4 480 74.6
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 1.8e-215 752.7 495 71.9
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.8e-215 752.7 486 73.0
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 1.8e-215 752.7 480 74.0
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 2.3e-215 752.3 484 74.0
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 3.0e-215 751.9 495 71.9
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 5.1e-215 751.1 485 73.4
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 5.1e-215 751.1 483 73.5
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 8.7e-215 750.4 479 72.9
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 8.7e-215 750.4 482 73.7
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 1.1e-214 750.0 479 74.1
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 1.1e-214 750.0 480 73.8
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 1.9e-214 749.2 480 75.2
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 3.3e-214 748.4 480 74.8
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 3.3e-214 748.4 478 72.8
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 4.3e-214 748.0 480 74.4
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 5.7e-214 747.7 481 74.8
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 1.6e-213 746.1 488 74.0
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 2.2e-213 745.7 479 74.1
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 2.2e-213 745.7 484 73.1
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 2.2e-213 745.7 486 72.6
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 2.2e-213 745.7 509 71.1
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 2.8e-213 745.3 483 73.7
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 2.8e-213 745.3 483 73.3
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 4.8e-213 744.6 486 72.6
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 1.8e-212 742.7 491 71.9
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 1.5e-211 739.6 480 73.8
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 2.0e-211 739.2 483 71.6
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 2.6e-211 738.8 483 73.1
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 2.6e-211 738.8 518 68.3
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 3.4e-211 738.4 480 73.3
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 4.5e-211 738.0 478 73.4
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 1.0e-210 736.9 483 72.5
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 3.8e-210 734.9 486 73.3
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 6.5e-210 734.2 485 71.3
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 8.5e-210 733.8 478 72.0
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 1.1e-209 733.4 479 71.8
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 1.4e-209 733.0 479 73.1
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 1.4e-209 733.0 497 71.4
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 1.4e-209 733.0 479 72.4
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 4.2e-209 731.5 490 70.6
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 5.5e-209 731.1 470 72.6
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 1.2e-208 729.9 482 71.2
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 2.7e-208 728.8 479 71.4
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.3e-207 725.7 459 75.4
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 6.7e-207 724.2 473 72.7
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 1.1e-206 723.4 482 72.2
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 1.4e-204 716.5 573 62.0
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 4.1e-204 714.9 462 73.4
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 1.2e-203 713.4 479 71.8
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 1.5e-203 713.0 483 70.4
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 2.6e-203 712.2 478 70.5
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 5.9e-203 711.1 572 62.6
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 1.0e-202 710.3 487 69.0
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 1.0e-202 710.3 485 69.1
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 8.5e-202 707.2 488 69.7
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 1.4e-201 706.4 482 69.5
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 2.1e-200 702.6 490 67.6
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 5.1e-199 698.0 487 69.4
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 8.5e-194 680.6 563 61.5
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 2.3e-191 672.5 540 62.4
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 5.2e-191 671.4 567 60.5
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 2.6e-190 669.1 478 67.6
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 2.2e-189 666.0 411 76.2
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 2.2e-189 666.0 479 66.6
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 4.1e-188 661.8 592 57.9
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 1.7e-186 656.4 410 75.6
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 1.8e-180 636.3 360 87.5
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 7.7e-179 630.9 332 93.1
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 2.2e-178 629.4 324 94.1
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 2.2e-173 612.8 447 66.4
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 1.8e-172 609.8 482 61.0
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 7.0e-172 607.8 426 67.6
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 7.0e-164 581.3 374 73.3
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 1.7e-162 576.6 326 88.3
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 3.0e-162 575.9 373 72.4
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 5.0e-162 575.1 483 57.6
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 3.3e-161 572.4 496 55.6
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 4.3e-161 572.0 360 76.4
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 1.6e-160 570.1 373 71.8
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 1.0e-154 550.8 342 75.1
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 6.2e-152 541.6 326 80.1
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.3e-149 533.9 320 78.8
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 1.6e-147 526.9 481 53.8
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 3.5e-147 525.8 327 76.8
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 6.0e-139 498.4 327 73.7
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 1.6e-131 473.8 351 66.7
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.6e-131 472.2 296 75.0
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.0e-98 363.2 222 76.1
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 8.7e-98 361.7 388 48.2
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 3.7e-96 356.3 446 43.0
Ca_29817_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 3.9e-90 336.3 210 75.2
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 2.9e-85 320.1 426 42.7
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 2.4e-79 300.4 227 61.2
Ca_25384_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 2.2e-77 293.9 186 74.7
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.7e-72 277.7 159 82.4
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.7e-72 277.7 159 82.4
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 5.9e-70 269.2 159 81.1
unitig_26.g9585 Utricularia gibba HOM05D004862 ORTHO05D005841 2.0e-65 254.2 145 77.9
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 5.0e-53 213.0 410 32.9
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 4.6e-46 189.9 119 81.5
CsaV3_7G014970 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.4e-42 178.3 94 88.3
CsaV3_7G015010 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.1e-42 177.2 93 89.2
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.7e-40 171.4 106 80.2
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 2.2e-40 171.0 106 77.4
AagrBONN_evm.TU.Sc2ySwM_344.4621 Anthoceros agrestis HOM05D004862 ORTHO05D005841 4.1e-39 166.8 137 57.7
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 7.3e-28 129.4 91 68.1
TAR628G0087 Trochodendron aralioides HOM05D004862 ORTHO05D005841 5.6e-20 103.2 93 49.5
Actinidia00239 Actinidia chinensis HOM05D004862 ORTHO05D005841 2.6e-17 94.4 87 54.0
Cfa010153 Carpinus fangiana HOM05D004862 ORTHO05D005841 5.8e-17 93.2 70 62.9
CsaV3_7G014950 Cucumis sativus L. HOM05D004862 ORTHO05D005841 7.6e-17 92.8 65 60.0
Potri.003G022701 Populus trichocarpa HOM05D004862 ORTHO05D005841 8.4e-16 89.4 76 60.5
unitig_26.g9586 Utricularia gibba HOM05D004862 ORTHO05D005841 1.1e-15 89.0 68 64.7
MCO05G371 Micromonas commoda HOM05D004862 ORTHO05D267887 3.2e-07 60.8 130 33.1
Dinv28090 Davidia involucrata HOM05D000259 ORTHO05D000155 3.5e-06 57.4 34 70.6


User provided reference genes

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