Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 9.4e-113 410.2 210 100.0
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 1.5e-110 402.9 210 97.6
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 4.4e-110 401.4 210 97.1
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 1.8e-108 396.0 210 95.7
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 7.0e-108 394.0 210 94.8
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 7.0e-108 394.0 210 94.8
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 7.0e-108 394.0 210 94.8
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 9.1e-108 393.7 210 97.1
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 5.9e-107 391.0 210 94.3
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 2.2e-106 389.0 210 93.8
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 2.2e-106 389.0 210 93.8
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 1.2e-104 383.3 208 93.3
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 2.7e-104 382.1 208 93.8
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 1.1e-100 370.2 208 90.9
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 1.4e-100 369.8 208 90.4
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 4.1e-100 368.2 208 90.9
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 5.4e-100 367.9 208 88.9
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 7.0e-100 367.5 208 90.4
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 9.1e-100 367.1 208 88.9
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 9.1e-100 367.1 208 88.9
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 2.0e-99 365.9 208 89.4
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 2.0e-99 365.9 208 89.4
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 2.7e-99 365.5 208 88.9
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 2.7e-99 365.5 208 89.4
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 3.5e-99 365.2 208 88.9
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 4.5e-99 364.8 208 89.4
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 5.9e-99 364.4 207 88.9
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 5.9e-99 364.4 207 88.9
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 5.9e-99 364.4 207 89.9
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 7.7e-99 364.0 208 88.5
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 7.7e-99 364.0 207 88.9
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.0e-98 363.6 208 88.9
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 1.3e-98 363.2 208 88.5
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 1.3e-98 363.2 208 88.5
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 1.3e-98 363.2 208 88.0
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.7e-98 362.8 208 88.5
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 2.9e-98 362.1 208 88.0
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 2.9e-98 362.1 208 88.9
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 2.9e-98 362.1 208 88.9
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 5.0e-98 361.3 208 86.5
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 6.6e-98 360.9 208 87.5
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 8.6e-98 360.5 208 87.5
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 8.6e-98 360.5 208 87.5
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 8.6e-98 360.5 208 87.5
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 1.1e-97 360.1 208 87.5
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 1.5e-97 359.8 208 87.0
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.5e-97 359.8 208 88.0
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 1.9e-97 359.4 207 87.9
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 2.5e-97 359.0 211 87.2
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 2.5e-97 359.0 208 86.1
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 2.5e-97 359.0 208 87.5
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 3.3e-97 358.6 207 87.9
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 3.3e-97 358.6 208 88.0
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 3.3e-97 358.6 208 87.0
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 9.5e-97 357.1 210 85.7
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 9.5e-97 357.1 208 87.0
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 9.5e-97 357.1 208 85.6
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 1.2e-96 356.7 202 88.6
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 1.6e-96 356.3 208 86.1
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 1.6e-96 356.3 208 86.1
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 1.6e-96 356.3 213 86.4
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 2.1e-96 355.9 208 86.5
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 2.1e-96 355.9 208 87.0
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 2.8e-96 355.5 207 86.0
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 3.6e-96 355.1 208 86.1
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 3.6e-96 355.1 208 85.6
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 3.6e-96 355.1 207 87.4
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 4.7e-96 354.8 208 85.1
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 1.0e-95 353.6 208 84.6
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.4e-95 353.2 208 85.1
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 1.8e-95 352.8 208 87.0
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 3.0e-95 352.1 208 84.6
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 4.0e-95 351.7 208 86.5
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 4.0e-95 351.7 208 85.6
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 6.8e-95 350.9 208 85.6
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 6.8e-95 350.9 207 84.5
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 6.8e-95 350.9 208 85.6
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 8.9e-95 350.5 207 85.5
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 1.2e-94 350.1 210 85.2
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 1.5e-94 349.7 208 85.1
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.5e-94 349.7 208 85.1
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 1.5e-94 349.7 208 86.5
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 1.5e-94 349.7 208 86.5
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 4.4e-94 348.2 208 86.1
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 7.5e-94 347.4 208 83.7
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 7.5e-94 347.4 218 81.7
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 9.8e-94 347.1 206 85.0
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 2.2e-93 345.9 178 96.6
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 4.9e-93 344.7 206 84.5
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 6.3e-93 344.4 208 84.6
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 8.3e-93 344.0 208 84.1
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 1.8e-92 342.8 210 83.3
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 2.4e-92 342.4 208 83.7
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 3.2e-92 342.0 208 85.6
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.0e-90 337.0 208 82.7
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.0e-90 337.0 208 82.7
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 1.7e-90 336.3 208 84.1
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 2.9e-90 335.5 197 86.3
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 3.9e-90 335.1 208 82.2
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 5.0e-90 334.7 208 80.8
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 5.0e-90 334.7 208 80.3
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 3.6e-88 328.6 208 80.3
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 4.7e-88 328.2 208 81.2
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 6.1e-88 327.8 178 90.4
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 5.2e-87 324.7 177 89.8
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 5.2e-87 324.7 178 88.8
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 3.7e-85 318.5 178 87.6
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 6.4e-85 317.8 208 79.3
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 4.6e-83 311.6 207 79.2
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 7.8e-83 310.8 201 74.1
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 8.6e-82 307.4 178 82.6
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 1.4e-79 300.1 191 80.6
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 3.1e-79 298.9 209 76.6
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 3.1e-79 298.9 208 77.4
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 6.6e-74 281.2 167 81.4
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 2.5e-73 279.3 155 87.7
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 3.3e-73 278.9 206 72.3
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 1.1e-71 273.9 154 87.0
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 3.7e-69 265.4 208 70.2
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 3.5e-67 258.8 195 64.1
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 3.3e-65 252.3 212 67.0
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 7.3e-65 251.1 198 62.1
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 7.3e-65 251.1 204 60.8
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 1.1e-63 247.3 198 60.6
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 1.5e-62 243.4 207 64.7
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 7.6e-62 241.1 161 77.6
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 4.3e-57 225.3 208 51.9
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 2.1e-56 223.0 119 89.9
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 7.6e-54 214.5 134 86.6
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 2.2e-53 213.0 167 67.7
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.9e-49 199.9 150 69.3
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 6.2e-48 194.9 208 51.0
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 1.8e-47 193.4 202 52.5
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 4.9e-45 185.3 204 44.6
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 1.1e-44 184.1 204 45.6
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 3.0e-42 176.0 209 52.2
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 2.1e-40 169.9 160 61.2
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 3.1e-39 166.0 98 81.6
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 3.8e-37 159.1 232 41.4
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 1.9e-36 156.8 208 47.6
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 1.1e-31 141.0 95 76.8
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 1.4e-31 140.6 99 72.7
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 5.8e-30 135.2 207 44.9
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 8.4e-29 131.3 92 75.0
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 3.5e-27 125.9 185 36.8
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 6.1e-27 125.2 135 54.8
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 1.6e-24 117.1 59 88.1
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 1.1e-23 114.4 82 72.0
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 5.3e-23 112.1 75 77.3
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 7.7e-22 108.2 84 67.9
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 7.7e-22 108.2 60 86.7
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 1.3e-21 107.5 72 76.4
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 7.2e-12 75.1 61 60.7
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 1.6e-11 73.9 62 69.4
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 4.8e-08 62.4 39 69.2
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 4.8e-08 62.4 65 60.0
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 1.1e-07 61.2 38 71.1
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 5.9e-06 55.5 137 24.1


User provided reference genes

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