Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G14150 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 1.1e-29 132.5 62 100.0
AL1G39540 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 1.8e-27 125.2 62 91.9
AL6G36070 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 3.6e-20 100.9 61 75.4
CARHR184030 Cardamine hirsuta HOM05D007592 ORTHO05D004645 3.6e-20 100.9 61 78.7
AL1G54420 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 1.0e-19 99.4 61 73.8
CARHR180790 Cardamine hirsuta HOM05D007592 ORTHO05D004645 5.2e-19 97.1 62 75.8
Manes.13G090650 Manihot esculenta HOM05D007592 ORTHO05D004645 2.7e-15 84.7 57 66.7
Manes.03G086209 Manihot esculenta HOM05D007592 ORTHO05D004645 2.3e-14 81.6 57 63.2
Manes.12G071166 Manihot esculenta HOM05D007743 ORTHO05D010219 2.3e-14 81.6 57 63.2
Manes.15G155750 Manihot esculenta HOM05D007743 ORTHO05D010219 3.9e-14 80.9 57 63.2
Manes.04G041320 Manihot esculenta HOM05D007592 ORTHO05D004645 5.0e-14 80.5 57 61.4
Manes.14G157656 Manihot esculenta HOM05D007743 ORTHO05D010219 5.0e-14 80.5 60 60.0
Atru.chr13.1766 Acer truncatum HOM05D007592 ORTHO05D004645 2.1e-12 75.1 61 54.1
Ciclev10033648m.g Citrus clementina HOM05D007592 ORTHO05D004645 4.7e-12 73.9 61 54.1
Manes.09G090928 Manihot esculenta HOM05D007592 ORTHO05D004645 4.7e-12 73.9 60 55.0
Oeu029633.1 Olea europaea HOM05D007592 ORTHO05D004645 4.7e-12 73.9 61 54.1
Atru.chr8.1335 Acer truncatum HOM05D007592 ORTHO05D004645 6.2e-12 73.6 54 57.4
BolC6t37310H Brassica oleracea HOM05D007592 ORTHO05D004645 8.1e-12 73.2 61 52.5
BraA09t38299Z Brassica rapa HOM05D007592 ORTHO05D004645 8.1e-12 73.2 61 52.5
C06p21250 Brassica napus HOM05D007592 ORTHO05D004645 1.8e-11 72.0 61 52.5
AT1G24380 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 2.3e-11 71.6 61 52.5
AT4G10230 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 2.3e-11 71.6 61 52.5
Rhsim08G0115200 Rhododendron simsii HOM05D007743 ORTHO05D004645 4.0e-11 70.9 57 50.9
DCAR_018612 Daucus carota HOM05D007592 ORTHO05D004645 5.2e-11 70.5 60 51.7
BcaB06g28792 Brassica carinata HOM05D007743 ORTHO05D004645 6.8e-11 70.1 60 50.0
C04p29390 Brassica napus HOM05D007592 ORTHO05D004645 6.8e-11 70.1 61 50.8
CANSAT35G0055 Cannabis sativa HOM05D007592 ORTHO05D004645 8.9e-11 69.7 59 52.5
CARHR029530 Cardamine hirsuta HOM05D007592 ORTHO05D004645 8.9e-11 69.7 57 52.6
AL9U10800 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 1.5e-10 68.9 41 75.6
Ciclev10027215m.g Citrus clementina HOM05D007592 ORTHO05D004645 1.5e-10 68.9 61 49.2
DCAR_001490 Daucus carota HOM05D007592 ORTHO05D004645 1.5e-10 68.9 60 51.7
CSS0032344 Camellia sinensis var. sinensis HOM05D007743 ORTHO05D004645 2.6e-10 68.2 57 47.4
Ciclev10003950m.g Citrus clementina HOM05D007592 ORTHO05D004645 2.6e-10 68.2 61 50.8
CANSAT64G0010 Cannabis sativa HOM05D007592 ORTHO05D004645 3.4e-10 67.8 61 50.8
BcaB04g19609 Brassica carinata HOM05D007743 ORTHO05D004645 4.4e-10 67.4 60 48.3
Atru.chr11.1181 Acer truncatum HOM05D000214 ORTHO05D000131 5.8e-10 67.0 60 51.7
BcaB01g01748 Brassica carinata HOM05D007743 ORTHO05D004645 5.8e-10 67.0 60 50.0
BcaB07g33427 Brassica carinata HOM05D007743 ORTHO05D004645 5.8e-10 67.0 60 50.0
Ciclev10016612m.g Citrus clementina HOM05D007592 ORTHO05D004645 7.5e-10 66.6 61 49.2
CANSAT64G2577 Cannabis sativa HOM05D007592 ORTHO05D004645 9.8e-10 66.2 61 52.5
BcaC01g02275 Brassica carinata HOM05D007743 ORTHO05D004645 3.7e-09 64.3 56 48.2
CSS0013406 Camellia sinensis var. sinensis HOM05D007743 ORTHO05D004645 3.7e-09 64.3 57 45.6
CANSAT25G1186 Cannabis sativa HOM05D007592 ORTHO05D004645 3.7e-09 64.3 61 50.8
Atru.chr5.2435 Acer truncatum HOM05D007743 ORTHO05D004645 4.9e-09 63.9 60 50.0
Atru.chr10.1040 Acer truncatum HOM05D007592 ORTHO05D004645 6.4e-09 63.5 61 50.8
BcaB08g34421 Brassica carinata HOM05D007743 ORTHO05D004645 1.4e-08 62.4 59 45.8
Migut.A00242 Erythranthe guttata HOM05D007592 ORTHO05D004645 1.4e-08 62.4 61 50.8
BcaB02g10737 Brassica carinata HOM05D007743 ORTHO05D004645 2.4e-08 61.6 57 45.6
BcaC08g43897 Brassica carinata HOM05D007743 ORTHO05D004645 3.2e-08 61.2 60 46.7
FAN05G2464 Fragaria x ananassa HOM05D007743 ORTHO05D004645 7.1e-08 60.1 61 45.9
FAN08G2536 Fragaria x ananassa HOM05D007743 ORTHO05D004645 7.1e-08 60.1 61 45.9
FAN08G2971 Fragaria x ananassa HOM05D007743 ORTHO05D004645 7.1e-08 60.1 61 45.9
FAN09G0033 Fragaria x ananassa HOM05D007743 ORTHO05D004645 7.1e-08 60.1 61 45.9
FAN26G1586 Fragaria x ananassa HOM05D007743 ORTHO05D004645 7.1e-08 60.1 61 45.9
FAN26G1874 Fragaria x ananassa HOM05D007743 ORTHO05D004645 7.1e-08 60.1 61 45.9
CARHR258700 Cardamine hirsuta HOM05D007592 ORTHO05D004645 9.2e-08 59.7 59 47.5
Atru.chr3.1033 Acer truncatum HOM05D007592 ORTHO05D004645 1.2e-07 59.3 61 47.5
CSS0034959 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.6e-07 58.9 49 51.0
Ciclev10003711m.g Citrus clementina HOM05D007592 ORTHO05D004645 1.6e-07 58.9 61 45.9
FAN09G3614 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.6e-07 58.9 59 42.4
FvH4_1g29461 Fragaria vesca HOM05D007743 ORTHO05D010219 2.1e-07 58.5 59 42.4
FAN18G3916 Fragaria x ananassa HOM05D007743 ORTHO05D004645 2.7e-07 58.2 61 44.3
CSS0008814 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 3.5e-07 57.8 49 51.0
CSS0008946 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 3.5e-07 57.8 49 51.0
CSS0011061 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 3.5e-07 57.8 49 51.0
CSS0023642 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 3.5e-07 57.8 49 51.0
CSS0041053 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 3.5e-07 57.8 49 51.0
FvH4_2g02401 Fragaria vesca HOM05D007743 ORTHO05D010219 3.5e-07 57.8 62 46.8
Ciclev10023446m.g Citrus clementina HOM05D007592 ORTHO05D004645 6.0e-07 57.0 61 45.9
Atru.chr8.1611 Acer truncatum HOM05D007592 ORTHO05D004645 1.0e-06 56.2 50 54.0
CSS0002566 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.0e-06 56.2 49 46.9
CSS0006860 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.0e-06 56.2 49 46.9
CSS0010296 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.0e-06 56.2 49 46.9
CSS0010386 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.0e-06 56.2 49 46.9
CSS0012194 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.0e-06 56.2 49 46.9
CSS0033894 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.0e-06 56.2 49 51.0
CSS0041981 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.0e-06 56.2 49 51.0
CSS0001664 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.3e-06 55.8 49 49.0
CSS0004599 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.3e-06 55.8 49 49.0
CSS0049636 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.7e-06 55.5 49 49.0
Carub.0004s0678 Capsella rubella HOM05D007592 ORTHO05D004645 3.0e-06 54.7 57 43.9


User provided reference genes

Program Settings