Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G14110 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 6.5e-90 334.0 160 100.0
AT3G25597 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 2.3e-82 308.9 161 93.8
Sp2g14870 Schrenkiella parvula HOM05D007408 ORTHO05D009325 2.0e-75 285.8 157 89.8
C07p34420 Brassica napus HOM05D007408 ORTHO05D009325 7.8e-75 283.9 156 87.8
BraA06t27184Z Brassica rapa HOM05D007408 ORTHO05D009325 1.3e-74 283.1 156 87.8
Thhalv10005058m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 1.7e-74 282.7 158 87.3
A06p42710 Brassica napus HOM05D007408 ORTHO05D009325 2.9e-74 282.0 155 88.4
BcaC06g33976 Brassica carinata HOM05D007408 ORTHO05D009325 1.1e-73 280.0 156 87.2
Carub.0005s0338 Capsella rubella HOM05D007408 ORTHO05D009325 5.6e-73 277.7 162 84.0
CARHR146570 Cardamine hirsuta HOM05D007408 ORTHO05D009325 1.4e-71 273.1 160 84.4
BcaC03g17274 Brassica carinata HOM05D007408 ORTHO05D009325 1.4e-68 263.1 156 82.7
C02p52180 Brassica napus HOM05D007408 ORTHO05D009325 1.4e-68 263.1 156 82.7
BolC2t11303H Brassica oleracea HOM05D007408 ORTHO05D009325 1.4e-68 263.1 156 82.7
BcaC06g31130 Brassica carinata HOM05D007408 ORTHO05D009325 1.2e-67 260.0 153 83.0
BraA02t08410Z Brassica rapa HOM05D007408 ORTHO05D009325 1.2e-67 260.0 156 82.1
BcaB07g30265 Brassica carinata HOM05D007408 ORTHO05D009325 5.6e-65 251.1 155 81.3
A02p33920 Brassica napus HOM05D007408 ORTHO05D009325 4.1e-60 235.0 143 81.1
BolC7t43970H Brassica oleracea HOM05D007408 ORTHO05D009325 1.7e-42 176.4 102 83.3
THA.LOC104805235 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 3.9e-42 175.3 152 60.5
RcHm_v2.0_Chr4g0436431 Rosa chinensis HOM05D007408 ORTHO05D009325 4.5e-22 108.6 144 45.8
Gorai.008G188700 Gossypium raimondii HOM05D007408 ORTHO05D009325 2.2e-21 106.3 159 42.8
Gohir.D12G176300 Gossypium hirsutum HOM05D007408 ORTHO05D009325 2.9e-21 105.9 159 42.1
MD13G1050800 Malus domestica HOM05D007408 ORTHO05D009325 3.8e-21 105.5 148 43.9
Cpa.g.sc1.248 Carica papaya HOM05D007408 ORTHO05D009325 1.1e-20 104.0 119 47.9
Glyma.16G099500 Glycine max HOM05D007408 ORTHO05D009325 1.9e-20 103.2 151 41.1
THA.LOC104822179 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 1.9e-20 103.2 161 41.0
Gohir.A12G173800 Gossypium hirsutum HOM05D007408 ORTHO05D009325 2.5e-20 102.8 155 40.0
Sabra08G0084200 Salix brachista HOM05D007408 ORTHO05D009325 2.5e-20 102.8 142 43.0
Phvul.003G281600 Phaseolus vulgaris HOM05D007408 ORTHO05D009325 1.6e-19 100.1 150 41.3
Potri.008G111500 Populus trichocarpa HOM05D007408 ORTHO05D009325 2.7e-19 99.4 150 41.3
Cfa008792 Carpinus fangiana HOM05D007408 ORTHO05D009325 4.6e-19 98.6 154 42.2
SGA_v2.0_scaffold36G14509 Striga asiatica HOM05D007408 ORTHO05D009325 4.6e-19 98.6 130 41.5
Prupe.1G301300 Prunus persica HOM05D007408 ORTHO05D009325 7.9e-19 97.8 152 40.1
Manes.06G075900 Manihot esculenta HOM05D007408 ORTHO05D009325 1.0e-18 97.4 150 42.0
Atru.chr11.1432 Acer truncatum HOM05D007408 ORTHO05D009325 1.3e-18 97.1 153 39.9
Haze_11804 Corylus avellana HOM05D007408 ORTHO05D009325 2.3e-18 96.3 123 42.3
Oeu024124.1 Olea europaea HOM05D007408 ORTHO05D009325 3.9e-18 95.5 131 40.5
TWI79G0837 Tripterygium wilfordii HOM05D007408 ORTHO05D009325 5.1e-18 95.1 150 40.7
Cc11_g10990 Coffea canephora HOM05D007408 ORTHO05D009325 6.7e-18 94.7 147 42.9
FAN17G1226 Fragaria x ananassa HOM05D000085 ORTHO05D000274 6.7e-18 94.7 142 45.8
PGR119G0146 Punica granatum HOM05D007408 ORTHO05D009325 1.1e-17 94.0 149 38.9
FAN22G2286 Fragaria x ananassa HOM05D000227 ORTHO05D001491 1.5e-17 93.6 145 44.8
FAN07G2148 Fragaria x ananassa HOM05D000085 ORTHO05D000274 1.9e-17 93.2 150 44.7
FAN12G0389 Fragaria x ananassa HOM05D000085 ORTHO05D000274 1.9e-17 93.2 141 45.4
Solyc05g010130.1 Solanum lycopersicum HOM05D007408 ORTHO05D009325 1.9e-17 93.2 129 39.5
DCAR_026703 Daucus carota HOM05D002818 ORTHO05D003244 2.5e-17 92.8 120 40.8
CANSAT64G2960 Cannabis sativa HOM05D007408 ORTHO05D009325 7.4e-17 91.3 164 36.0
CiPaw.06G098200 Carya illinoinensis HOM05D007408 ORTHO05D009325 9.6e-17 90.9 166 39.2
VMungo0251G2162 Vigna mungo HOM05D007408 ORTHO05D009325 1.3e-16 90.5 125 41.6
Eucgr.B03072 Eucalyptus grandis HOM05D007408 ORTHO05D009325 1.6e-16 90.1 137 40.1
Lj4g0027659 Lotus japonicus HOM05D007408 ORTHO05D009325 1.6e-16 90.1 148 39.2
Lalb_Chr20g0122411 Lupinus albus HOM05D007408 ORTHO05D009325 2.1e-16 89.7 129 40.3
HanXRQChr17g0551421 Helianthus annuus HOM05D007408 ORTHO05D009325 1.1e-15 87.4 122 44.3
Thecc.02G364900 Theobroma cacao HOM05D007408 ORTHO05D009325 1.4e-15 87.0 125 41.6
CARHR061510 Cardamine hirsuta HOM05D007408 ORTHO05D009325 2.4e-15 86.3 119 38.7
Lsat_1_v5_gn_3_60200 Lactuca sativa HOM05D007408 ORTHO05D009325 3.1e-15 85.9 122 41.0
SalBow8G1270 Salvia bowleyana HOM05D007408 ORTHO05D009325 6.9e-15 84.7 130 40.0
SalBow8G3082 Salvia bowleyana HOM05D007408 ORTHO05D009325 6.9e-15 84.7 130 40.0
HanXRQChr15g0475971 Helianthus annuus HOM05D007408 ORTHO05D009325 1.2e-14 84.0 121 40.5
AT1G68700 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 1.5e-14 83.6 112 40.2
CARHR025780 Cardamine hirsuta HOM05D007408 ORTHO05D009325 2.0e-14 83.2 114 40.4
C06p41170 Brassica napus HOM05D000085 ORTHO05D000274 2.6e-14 82.8 155 34.2
Ciclev10033573m.g Citrus clementina HOM05D007408 ORTHO05D009325 2.6e-14 82.8 111 41.4
BcaC08g46321 Brassica carinata HOM05D000085 ORTHO05D000274 3.4e-14 82.4 155 33.5
BolC6t39308H Brassica oleracea HOM05D000085 ORTHO05D000274 3.4e-14 82.4 155 33.5
Medtr8g069910 Medicago truncatula HOM05D007408 ORTHO05D009325 3.4e-14 82.4 143 37.8
TPR.G24816 Trifolium pratense HOM05D007408 ORTHO05D009325 3.4e-14 82.4 154 39.0
Sp5g23800 Schrenkiella parvula HOM05D007408 ORTHO05D009325 4.5e-14 82.0 159 33.3
A07p35100 Brassica napus HOM05D000085 ORTHO05D000274 1.0e-13 80.9 155 32.9
BraA07t31103Z Brassica rapa HOM05D000085 ORTHO05D000274 1.0e-13 80.9 155 32.9
TAR629G0610 Trochodendron aralioides HOM05D007408 ORTHO05D009325 1.0e-13 80.9 144 38.9
AL1G39610 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 1.3e-13 80.5 120 38.3
C06p37420 Brassica napus HOM05D007408 ORTHO05D009325 1.3e-13 80.5 129 34.9
AT1G26140 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 2.2e-13 79.7 117 38.5
BcaB03g15446 Brassica carinata HOM05D007408 ORTHO05D009325 2.2e-13 79.7 155 31.6
Ah.02g127260 Amaranthus hybridus HOM05D007408 ORTHO05D009325 2.9e-13 79.3 154 33.1
A08p27160 Brassica napus HOM05D007408 ORTHO05D009325 2.9e-13 79.3 114 39.5
Carub.0001s2482 Capsella rubella HOM05D007408 ORTHO05D009325 2.9e-13 79.3 120 38.3
arahy.Tifrunner.gnm1.ann1.24G1QJ Arachis hypogaea HOM05D007408 ORTHO05D009325 3.8e-13 79.0 144 34.7
BraA07t30814Z Brassica rapa HOM05D007408 ORTHO05D009325 4.9e-13 78.6 112 35.7
A07p31850 Brassica napus HOM05D007408 ORTHO05D009325 6.5e-13 78.2 112 35.7
C03p72700 Brassica napus HOM05D007408 ORTHO05D009325 6.5e-13 78.2 116 41.4
BolC3t19568H Brassica oleracea HOM05D007408 ORTHO05D009325 6.5e-13 78.2 116 41.4
BraA08t34661Z Brassica rapa HOM05D007408 ORTHO05D009325 6.5e-13 78.2 119 40.3
Sp1g22520 Schrenkiella parvula HOM05D007408 ORTHO05D009325 1.1e-12 77.4 113 39.8
BcaB03g15828 Brassica carinata HOM05D007408 ORTHO05D009325 1.9e-12 76.6 112 33.9
Migut.L01119 Erythranthe guttata HOM05D007408 ORTHO05D009325 1.9e-12 76.6 143 35.7
Thhalv10009687m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 2.5e-12 76.3 121 38.0
A09p39710 Brassica napus HOM05D007408 ORTHO05D009325 7.1e-12 74.7 115 40.0
BraA09t39470Z Brassica rapa HOM05D007408 ORTHO05D009325 7.1e-12 74.7 115 40.0
BcaC05g26429 Brassica carinata HOM05D007408 ORTHO05D009325 2.7e-11 72.8 115 39.1
C05p24760 Brassica napus HOM05D007408 ORTHO05D009325 2.7e-11 72.8 115 39.1
PSO782G1144 Papaver somniferum HOM05D007408 ORTHO05D009325 4.6e-11 72.0 116 37.9
CsaV3_2G010890 Cucumis sativus L. HOM05D007408 ORTHO05D009325 7.9e-11 71.2 145 33.8
Carub.0002s1524 Capsella rubella HOM05D007408 ORTHO05D009325 1.0e-10 70.9 145 30.3
BolC6t38845H Brassica oleracea HOM05D000085 ORTHO05D000274 1.3e-10 70.5 122 33.6
Psat4g113200 Pisum sativum HOM05D007408 ORTHO05D009325 1.8e-10 70.1 145 34.5
HanXRQChr12g0365241 Helianthus annuus HOM05D007408 ORTHO05D009325 8.7e-10 67.8 129 31.0
Sc11g0002930 Simmondsia chinensis HOM05D007408 ORTHO05D009325 8.7e-10 67.8 154 34.4
Manes.14G095101 Manihot esculenta HOM05D007408 ORTHO05D009325 7.4e-09 64.7 47 61.7
HPP92_003100 Vanilla planifolia HOM05D007408 ORTHO05D009325 2.4e-07 59.7 43 58.1
HPP92_003114 Vanilla planifolia HOM05D007408 ORTHO05D009325 4.1e-07 58.9 111 32.4
BcaC08g43155 Brassica carinata HOM05D007408 ORTHO05D009325 6.9e-07 58.2 113 36.3
Aqoxy3G03838 Aquilegia oxysepala HOM05D007408 ORTHO05D009325 2.0e-06 56.6 123 35.0
Sed0018728 Sechium edule HOM05D007408 ORTHO05D009325 2.0e-06 56.6 119 36.1
PSO063G0414 Papaver somniferum HOM05D007408 ORTHO05D009325 5.9e-06 55.1 119 33.6


User provided reference genes

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