Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 1.1e-197 693.3 424 100.0
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 2.4e-184 649.0 425 89.9
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 4.6e-151 538.5 405 87.4
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 6.8e-110 401.7 447 69.1
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 5.2e-102 375.6 436 62.2
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 1.1e-99 367.9 435 66.0
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 7.8e-98 361.7 426 62.0
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 4.7e-95 352.4 419 64.4
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 2.3e-94 350.1 436 63.3
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 5.2e-94 349.0 436 63.1
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 2.4e-91 340.1 470 61.9
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 4.1e-91 339.3 451 60.5
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 6.6e-89 332.0 430 55.6
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 2.5e-88 330.1 397 65.2
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 4.3e-88 329.3 433 61.4
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 4.7e-87 325.9 433 61.0
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 1.1e-86 324.7 426 58.7
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 1.2e-85 321.2 433 60.5
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 1.1e-83 314.7 433 59.6
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 2.4e-83 313.5 448 57.6
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 1.6e-79 300.8 437 56.1
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 6.8e-78 295.4 447 59.7
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 2.9e-76 290.0 425 60.0
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 5.4e-67 259.2 395 49.1
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 8.1e-63 245.4 452 55.8
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 1.2e-61 241.5 481 53.2
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 1.7e-57 227.6 224 63.8
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 8.4e-36 155.6 463 40.2
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 1.1e-35 155.2 482 34.9
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 1.1e-35 155.2 482 34.9
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 3.2e-35 153.7 473 37.6
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 9.3e-35 152.1 465 37.0
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 4.6e-34 149.8 471 34.2
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 3.0e-33 147.1 476 37.0
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 4.3e-32 143.3 464 32.8
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 5.7e-32 142.9 484 36.4
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 2.8e-31 140.6 470 32.6
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 3.7e-31 140.2 471 32.9
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 4.1e-30 136.7 468 37.6
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 6.9e-30 136.0 477 36.1
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 9.0e-30 135.6 478 33.3
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 1.2e-29 135.2 457 35.9
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 4.5e-29 133.3 454 36.1
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.3e-28 131.7 498 34.5
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 3.8e-28 130.2 465 35.7
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 2.5e-27 127.5 448 35.7
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.5e-27 127.5 446 34.8
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 2.5e-27 127.5 446 34.8
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 4.2e-27 126.7 499 34.7
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 3.6e-26 123.6 487 34.1
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 4.6e-26 123.2 241 39.8
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 4.6e-26 123.2 492 34.8
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 6.1e-26 122.9 452 40.5
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 1.0e-25 122.1 489 34.8
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 1.8e-25 121.3 470 34.7
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 3.0e-25 120.6 457 33.7
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 3.9e-25 120.2 477 34.4
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 5.1e-25 119.8 451 33.5
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 6.7e-25 119.4 484 34.5
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 6.7e-25 119.4 445 33.5
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 8.8e-25 119.0 437 36.6
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 8.8e-25 119.0 484 34.5
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.5e-24 118.2 488 34.4
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 2.0e-24 117.9 235 40.0
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 4.3e-24 116.7 476 32.4
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 4.3e-24 116.7 248 38.3
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 9.7e-24 115.5 250 38.4
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 1.7e-23 114.8 235 39.6
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 4.8e-23 113.2 247 39.7
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 4.8e-23 113.2 247 39.7
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 4.8e-23 113.2 247 41.3
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 8.2e-23 112.5 261 42.1
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 1.1e-22 112.1 434 35.7
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 2.4e-22 110.9 253 45.1
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 2.4e-22 110.9 270 37.0
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 3.1e-22 110.5 473 33.6
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 4.1e-22 110.2 436 35.8
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 4.1e-22 110.2 459 34.0
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 4.1e-22 110.2 429 30.5
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 5.3e-22 109.8 456 30.5
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 6.9e-22 109.4 433 29.6
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 6.9e-22 109.4 433 29.6
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 9.1e-22 109.0 456 32.2
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 2.6e-21 107.5 468 33.8
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 3.4e-21 107.1 457 34.1
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 4.5e-21 106.7 233 43.3
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 5.9e-21 106.3 245 38.8
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 7.7e-21 105.9 432 29.4
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.7e-20 104.8 253 41.5
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.7e-20 104.8 253 41.5
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 2.9e-20 104.0 255 42.0
BcaC04g21425 Brassica carinata HOM05D004568 ORTHO05D005343 6.5e-20 102.8 104 63.5
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.1e-19 102.1 235 37.9
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 1.9e-19 101.3 226 38.9
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 1.9e-19 101.3 438 29.9
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 4.2e-19 100.1 479 34.7
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 5.5e-19 99.8 255 35.3
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 2.7e-18 97.4 264 40.9
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 4.7e-18 96.7 458 34.5
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 4.7e-18 96.7 235 43.4
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 7.9e-18 95.9 264 40.9
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 7.9e-18 95.9 458 34.3
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 7.9e-18 95.9 387 33.6
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 2.3e-17 94.4 453 34.7
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 3.3e-16 90.5 246 32.1
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 5.7e-16 89.7 441 29.0
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 5.7e-16 89.7 451 32.2
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 1.3e-15 88.6 243 35.8
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 1.3e-15 88.6 243 35.8
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 4.8e-15 86.7 210 36.7
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 6.3e-15 86.3 266 38.7
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 6.3e-15 86.3 266 38.7
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 8.2e-15 85.9 234 33.3
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 5.3e-14 83.2 432 35.2
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 9.1e-14 82.4 205 37.1
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 9.1e-14 82.4 205 37.1
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 1.2e-13 82.0 251 37.5
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 2.6e-13 80.9 448 28.1
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 2.6e-13 80.9 223 37.2
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 5.9e-13 79.7 223 36.3
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 5.9e-13 79.7 223 36.3
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 7.7e-13 79.3 166 47.6
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 1.0e-12 79.0 265 31.7
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 1.3e-12 78.6 456 33.6
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 2.2e-12 77.8 262 31.3
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 3.8e-12 77.0 477 28.7
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 6.5e-12 76.3 226 33.6
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 1.5e-11 75.1 280 35.4
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 1.5e-11 75.1 331 29.3
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 1.5e-11 75.1 256 35.5
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 2.5e-11 74.3 265 35.8
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 3.2e-11 73.9 436 30.0
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 3.2e-11 73.9 291 36.4
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 4.2e-11 73.6 263 38.4
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 9.4e-11 72.4 443 32.7
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 1.2e-10 72.0 195 34.9
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 1.0e-09 68.9 102 43.1
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 1.8e-09 68.2 421 29.5
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 3.0e-09 67.4 204 32.8
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 3.9e-09 67.0 428 25.5
unitig_26.g10277 Utricularia gibba HOM05D004568 ORTHO05D005343 2.6e-08 64.3 178 33.1
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 1.7e-07 61.6 171 37.4
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 3.7e-07 60.5 296 31.1
Actinidia37881 Actinidia chinensis HOM05D004568 ORTHO05D005343 1.1e-06 58.9 245 33.1


User provided reference genes

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