Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G14010 Arabidopsis lyrata HOM05D006853 ORTHO05D008906 2.6e-147 525.4 268 100.0
AT3G25545 Arabidopsis thaliana HOM05D006853 ORTHO05D008906 1.1e-137 493.4 268 94.4
Sp2g14810 Schrenkiella parvula HOM05D006853 ORTHO05D008906 2.6e-131 472.2 268 91.0
Carub.0005s0328 Capsella rubella HOM05D006853 ORTHO05D008906 1.7e-130 469.5 268 89.2
Thhalv10004778m.g Eutrema salsugineum HOM05D006853 ORTHO05D008906 1.7e-130 469.5 268 90.7
Aa31LG2G6790 Aethionema arabicum HOM05D006853 ORTHO05D008906 4.6e-120 434.9 273 81.7
CARHR146460 Cardamine hirsuta HOM05D006853 ORTHO05D008906 5.0e-119 431.4 270 83.3
BcaB07g30639 Brassica carinata HOM05D006853 ORTHO05D008906 3.3e-118 428.7 269 83.3
BcaC03g17267 Brassica carinata HOM05D006853 ORTHO05D008906 3.6e-117 425.2 270 80.7
BcaC03g17268 Brassica carinata HOM05D006853 ORTHO05D008906 3.6e-117 425.2 270 80.7
BcaB07g30269 Brassica carinata HOM05D006853 ORTHO05D008906 3.1e-116 422.2 268 79.9
C02p52120 Brassica napus HOM05D006853 ORTHO05D008906 1.2e-115 420.2 272 79.0
BolC2t11296H Brassica oleracea HOM05D006853 ORTHO05D008906 1.2e-115 420.2 272 79.0
THA.LOC104801842 Tarenaya hassleriana HOM05D006853 ORTHO05D008906 1.0e-103 380.6 272 72.4
A02p33840 Brassica napus HOM05D006853 ORTHO05D008906 3.0e-103 379.0 271 73.4
BraA02t08402Z Brassica rapa HOM05D006853 ORTHO05D008906 9.5e-102 374.0 271 73.1
COL.COLO4_27747 Corchorus olitorius HOM05D006853 ORTHO05D008906 1.6e-88 330.1 274 63.5
Thecc.02G317700 Theobroma cacao HOM05D006853 ORTHO05D008906 7.3e-86 321.2 274 61.3
Atru.chr11.1459 Acer truncatum HOM05D006853 ORTHO05D008906 9.6e-86 320.9 269 61.0
Atru.chr11.1493 Acer truncatum HOM05D006853 ORTHO05D008906 9.6e-86 320.9 269 61.0
Gohir.A03G107900 Gossypium hirsutum HOM05D006853 ORTHO05D008906 4.8e-85 318.5 274 60.9
Duzib268G1722 Durio zibethinus HOM05D006853 ORTHO05D008906 6.2e-85 318.2 276 62.3
Cpa.g.sc53.10 Carica papaya HOM05D006853 ORTHO05D008906 1.8e-84 316.6 274 60.9
Ciclev10032464m.g Citrus clementina HOM05D006853 ORTHO05D008906 1.8e-84 316.6 269 62.1
Gohir.D02G132900 Gossypium hirsutum HOM05D006853 ORTHO05D008906 2.0e-83 313.2 274 60.2
TWI31G0390 Tripterygium wilfordii HOM05D006853 ORTHO05D008906 3.4e-83 312.4 258 60.9
CSS0003455 Camellia sinensis var. sinensis HOM05D006853 ORTHO05D008906 4.5e-83 312.0 269 60.2
CAN.G184.17 Capsicum annuum HOM05D006853 ORTHO05D008906 4.5e-83 312.0 269 63.2
CiPaw.06G096100 Carya illinoinensis HOM05D006853 ORTHO05D008906 7.6e-83 311.2 275 58.9
Lj6P771T55 Lonicera japonica HOM05D006853 ORTHO05D008906 9.9e-83 310.8 269 61.0
Nitab4.5_0010998g0020 Nicotiana tabacum HOM05D006853 ORTHO05D008906 2.9e-82 309.3 274 62.8
CANSAT64G2393 Cannabis sativa HOM05D006853 ORTHO05D008906 3.8e-82 308.9 269 58.4
QL03p047845 Quercus lobata HOM05D006853 ORTHO05D008906 8.4e-82 307.8 269 58.0
Nitab4.5_0000027g0460 Nicotiana tabacum HOM05D006853 ORTHO05D008906 2.4e-81 306.2 274 62.0
Potri.010G134600 Populus trichocarpa HOM05D006853 ORTHO05D008906 4.2e-81 305.4 275 56.7
Haze_23238 Corylus avellana HOM05D006853 ORTHO05D008906 5.4e-81 305.1 274 57.3
Cfa009867 Carpinus fangiana HOM05D006853 ORTHO05D008906 1.6e-80 303.5 245 62.4
Sed0015072 Sechium edule HOM05D006853 ORTHO05D008906 2.7e-80 302.8 276 56.9
CSS0047872 Camellia sinensis var. sinensis HOM05D006853 ORTHO05D008906 6.0e-80 301.6 275 56.7
Sopen05g006060 Solanum pennellii HOM05D006853 ORTHO05D008906 7.9e-80 301.2 273 60.4
Manes.06G077700 Manihot esculenta HOM05D006853 ORTHO05D008906 1.3e-79 300.4 274 57.3
Sabra10G0103400 Salix brachista HOM05D006853 ORTHO05D008906 2.3e-79 299.7 275 56.7
PGSC0003DMG400025119 Solanum tuberosum HOM05D006853 ORTHO05D008906 2.3e-79 299.7 273 60.1
Peaxi162Scf00188g00063 Petunia axillaris HOM05D006853 ORTHO05D008906 3.9e-79 298.9 274 60.6
Solyc05g010290.3 Solanum lycopersicum HOM05D006853 ORTHO05D008906 5.6e-78 295.0 273 59.3
MELO3C005171.2 Cucumis melo HOM05D006853 ORTHO05D008906 2.8e-77 292.7 277 57.0
ClCG01G007410 Citrullus lanatus HOM05D006853 ORTHO05D008906 3.7e-77 292.4 276 55.8
Rhsim09G0117300 Rhododendron simsii HOM05D006853 ORTHO05D008906 5.3e-76 288.5 275 56.4
SalBow8G0220 Salvia bowleyana HOM05D006853 ORTHO05D008906 5.3e-76 288.5 270 55.2
C09p31840 Brassica napus HOM05D006853 ORTHO05D008906 6.9e-76 288.1 195 80.0
Oeu024136.2 Olea europaea HOM05D006853 ORTHO05D008906 6.9e-76 288.1 270 57.0
BcaC04g21430 Brassica carinata HOM05D006853 ORTHO05D008906 9.0e-76 287.7 195 80.0
PGR102G0342 Punica granatum HOM05D006853 ORTHO05D008906 9.0e-76 287.7 275 56.0
Actinidia31918 Actinidia chinensis HOM05D006853 ORTHO05D006634 2.6e-75 286.2 244 59.4
Potri.008G110700 Populus trichocarpa HOM05D006853 ORTHO05D008906 3.4e-75 285.8 275 56.0
SalBow8G1387 Salvia bowleyana HOM05D006853 ORTHO05D008906 4.5e-75 285.4 270 54.8
Eucgr.B03092 Eucalyptus grandis HOM05D006853 ORTHO05D008906 5.8e-75 285.0 273 56.8
CsaV3_5G018880 Cucumis sativus L. HOM05D006853 ORTHO05D008906 1.7e-74 283.5 276 55.1
Hma1.2p1_0762F.1_g214380 Hydrangea macrophylla HOM05D006853 ORTHO05D008906 6.4e-74 281.6 270 55.9
PSO541G5551 Papaver somniferum HOM05D006853 ORTHO05D008906 8.4e-74 281.2 271 57.9
Prupe.1G299000 Prunus persica HOM05D006853 ORTHO05D006634 1.1e-73 280.8 243 58.8
Cc11_g11200 Coffea canephora HOM05D006853 ORTHO05D008906 1.4e-73 280.4 268 54.1
Oeu054577.1 Olea europaea HOM05D006853 ORTHO05D008906 1.4e-73 280.4 272 55.9
TAR624G1108 Trochodendron aralioides HOM05D006853 ORTHO05D008906 1.9e-73 280.0 271 57.2
MSTRG.7709 Avicennia marina HOM05D006853 ORTHO05D008906 9.3e-73 277.7 271 56.5
HanXRQChr08g0214781 Helianthus annuus HOM05D006853 ORTHO05D008906 1.2e-72 277.3 269 55.0
Hund25134 Selenicereus undatus HOM05D006853 ORTHO05D008906 2.1e-72 276.6 272 53.7
AUR62007823 Chenopodium quinoa HOM05D006853 ORTHO05D008906 2.7e-72 276.2 274 53.3
ECA233G2927 Erigeron canadensis HOM05D006853 ORTHO05D006634 3.5e-72 275.8 240 58.8
Oeu054573.1 Olea europaea HOM05D006853 ORTHO05D008906 7.9e-72 274.6 272 55.5
Oeu054575.1 Olea europaea HOM05D006853 ORTHO05D008906 7.9e-72 274.6 272 55.5
PSO675G5986 Papaver somniferum HOM05D006853 ORTHO05D008906 7.9e-72 274.6 270 56.3
Sc11g0002760 Simmondsia chinensis HOM05D006853 ORTHO05D008906 1.8e-71 273.5 273 55.3
MD16G1052100 Malus domestica HOM05D006853 ORTHO05D008906 1.1e-70 270.8 275 53.8
RcHm_v2.0_Chr4g0436821 Rosa chinensis HOM05D006853 ORTHO05D008906 5.6e-70 268.5 269 52.4
MD13G1053100 Malus domestica HOM05D006853 ORTHO05D008906 7.4e-70 268.1 276 53.3
FvH4_4g28700 Fragaria vesca HOM05D006853 ORTHO05D008906 9.6e-70 267.7 271 51.3
FAN12G0570 Fragaria x ananassa HOM05D006853 ORTHO05D008906 1.6e-69 266.9 271 51.3
Ah.02g127470 Amaranthus hybridus HOM05D001046 ORTHO05D002934 2.1e-69 266.5 260 53.5
FAN07G1226 Fragaria x ananassa HOM05D006853 ORTHO05D006634 3.1e-68 262.7 241 54.4
Lsat_1_v5_gn_8_37640 Lactuca sativa HOM05D006853 ORTHO05D008906 2.0e-67 260.0 271 52.4
Migut.L01132 Erythranthe guttata HOM05D006853 ORTHO05D006634 3.2e-65 252.7 237 54.9
Nn7g37287 Nelumbo nucifera HOM05D006853 ORTHO05D008906 9.3e-65 251.1 271 51.7
HanXRQChr15g0469081 Helianthus annuus HOM05D006853 ORTHO05D008906 4.6e-64 248.8 215 58.1
SGA_v2.0_scaffold16G07849 Striga asiatica HOM05D006853 ORTHO05D008906 2.4e-60 236.5 270 51.5
Dinv16569 Davidia involucrata HOM05D000044 ORTHO05D006634 2.6e-59 233.0 217 55.8
Aqoxy5G01341 Aquilegia oxysepala HOM05D006853 ORTHO05D008906 7.2e-57 224.9 232 53.0
SEGI_13208 Sequoiadendron giganteum HOM05D006853 ORTHO05D008906 4.8e-53 212.2 270 44.1
Actinidia30174 Actinidia chinensis HOM05D006853 ORTHO05D008906 4.1e-52 209.1 191 56.5
SHI15728 Sapria himalayana HOM05D006853 ORTHO05D008906 1.2e-51 207.6 233 46.4
ATR0721G025 Amborella trichopoda HOM05D006853 ORTHO05D008906 3.2e-49 199.5 274 42.3
Medtr5g049260 Medicago truncatula HOM05D006853 ORTHO05D008906 4.2e-49 199.1 234 49.1
Medtr5g049270 Medicago truncatula HOM05D006853 ORTHO05D008906 4.2e-49 199.1 234 49.1
Lalb_Chr17g0341651 Lupinus albus HOM05D006853 ORTHO05D008906 2.1e-48 196.8 269 45.0
Ca_05156_v3 Cicer arietinum L. HOM05D006853 ORTHO05D008906 6.1e-48 195.3 270 44.4
unitig_8.g3212 Utricularia gibba HOM05D006853 ORTHO05D008906 1.5e-46 190.7 270 43.3
Glyma.01G070150 Glycine max HOM05D006853 ORTHO05D008906 7.4e-46 188.3 270 44.4
VMungo1215G2951 Vigna mungo HOM05D006853 ORTHO05D008906 9.7e-46 188.0 268 40.3
Glyma.02G127200 Glycine max HOM05D006853 ORTHO05D008906 6.3e-45 185.3 271 43.2
GSVIVG01010168001 Vitis vinifera HOM05D000044 ORTHO05D006634 1.8e-44 183.7 238 42.9
Lj2g0007836 Lotus japonicus HOM05D000044 ORTHO05D006634 7.0e-44 181.8 233 44.2
HPP92_020023 Vanilla planifolia HOM05D006853 ORTHO05D008906 1.7e-42 177.2 242 45.5
Phvul.002G082000 Phaseolus vulgaris HOM05D006853 ORTHO05D008906 2.2e-42 176.8 268 39.2
Hma1.2p1_0125F.1_g058490 Hydrangea macrophylla HOM05D006853 ORTHO05D008906 6.5e-42 175.3 158 55.1
AL5G13960 Arabidopsis lyrata HOM05D006853 ORTHO05D008906 2.7e-40 169.9 91 93.4
arahy.Tifrunner.gnm1.ann1.N8UYM2 Arachis hypogaea HOM05D006853 ORTHO05D008906 2.6e-35 153.3 270 37.4
Pp3c1_39830 Physcomitrium patens HOM05D006853 ORTHO05D008906 1.0e-34 151.4 238 35.3
arahy.Tifrunner.gnm1.ann1.QR8D6Y Arachis hypogaea HOM05D006853 ORTHO05D008906 2.5e-33 146.7 234 39.7
SMO164G0046 Selaginella moellendorffii HOM05D006853 ORTHO05D008906 1.7e-29 134.0 219 36.5
AagrBONN_evm.TU.Sc2ySwM_368.2648 Anthoceros agrestis HOM05D006853 ORTHO05D008906 1.8e-28 130.6 240 37.5
Mapoly0008s0082 Marchantia polymorpha HOM05D006853 ORTHO05D008906 3.5e-27 126.3 264 33.3
CDE03G0412 Ceratophyllum demersum HOM05D001926 ORTHO05D002121 9.4e-25 118.2 153 45.1
Os01g0219000 Oryza sativa ssp. japonica HOM05D006853 ORTHO05D008906 8.0e-24 115.2 221 37.1
Zm00001eb119820 Zea mays HOM05D006853 ORTHO05D008906 2.6e-22 110.2 238 34.5
ATR0737G064 Amborella trichopoda HOM05D006853 ORTHO05D008906 2.7e-19 100.1 106 47.2
Psat1g127240 Pisum sativum HOM05D002500 ORTHO05D002587 4.0e-15 86.3 92 48.9
Psat2g098640 Pisum sativum HOM05D006853 ORTHO05D008906 4.0e-15 86.3 118 43.2
Cre01.g037650 Chlamydomonas reinhardtii HOM05D006853 ORTHO05D008906 6.8e-15 85.5 168 33.3
HanXRQChr12g0364531 Helianthus annuus HOM05D006853 ORTHO05D008906 2.0e-14 84.0 108 45.4
BraA09t38070Z Brassica rapa HOM05D006853 ORTHO05D008906 5.0e-10 69.3 41 80.5
PSO478G3347 Papaver somniferum HOM05D006853 ORTHO05D008906 1.6e-08 64.3 53 56.6


User provided reference genes

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