Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G13900 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.3e-122 443.0 215 100.0
AL5G13890 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.0e-77 293.9 215 72.1
AL5G13880 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.4e-74 283.5 213 70.0
AL5G13910 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.6e-70 270.0 198 70.7
AL5G13870 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.1e-68 263.8 213 66.2
AT2G04031 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.2e-55 219.2 215 55.8
AT2G04037 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 4.7e-51 205.3 213 53.5
AT2G04041 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 8.0e-51 204.5 213 53.1
AT1G47470 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 8.9e-50 201.1 216 50.5
AT1G45190 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 9.8e-49 197.6 216 50.5
AL3G23600 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 2.2e-48 196.4 216 50.0
Carub.0008s0480 Capsella rubella HOM05D007923 ORTHO05D009651 3.5e-46 189.1 216 47.7
AT3G11990 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 7.8e-46 188.0 216 46.8
AL1G53940 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.5e-41 173.7 216 44.0
CARHR086550 Cardamine hirsuta HOM05D007923 ORTHO05D009651 2.0e-41 173.3 217 45.2
AL9U10560 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 4.1e-39 165.6 215 45.6
Sp3g10220 Schrenkiella parvula HOM05D007923 ORTHO05D009651 9.2e-39 164.5 218 43.6
AT5G35405 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 4.3e-36 155.6 215 44.2
AT4G13261 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 5.6e-36 155.2 215 43.3
AT4G13263 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.6e-35 153.7 215 42.8
Thhalv10022160m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 2.2e-32 143.3 220 41.4
CARHR179580 Cardamine hirsuta HOM05D007923 ORTHO05D009651 1.0e-29 134.4 210 37.6
AT1G47450 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.3e-29 134.0 214 40.7
A05p37330 Brassica napus HOM05D007923 ORTHO05D009651 1.3e-29 134.0 218 39.9
BraA05t22530Z Brassica rapa HOM05D007923 ORTHO05D009651 1.3e-29 134.0 218 39.9
BcaC05g29300 Brassica carinata HOM05D007923 ORTHO05D009651 8.6e-29 131.3 218 38.5
C05p55840 Brassica napus HOM05D007923 ORTHO05D009651 8.6e-29 131.3 218 38.5
BolC5t34253H Brassica oleracea HOM05D007923 ORTHO05D009651 8.6e-29 131.3 218 38.5
Carub.0006s2829 Capsella rubella HOM05D007923 ORTHO05D009651 1.2e-27 127.5 218 38.1
A05p37350 Brassica napus HOM05D007923 ORTHO05D009651 6.9e-26 121.7 209 37.3
BraA05t22532Z Brassica rapa HOM05D007923 ORTHO05D009651 6.9e-26 121.7 209 37.3
BcaC05g29302 Brassica carinata HOM05D007923 ORTHO05D009651 8.9e-26 121.3 209 36.8
C05p55870 Brassica napus HOM05D007923 ORTHO05D009651 8.9e-26 121.3 209 36.8
BolC5t34256H Brassica oleracea HOM05D007923 ORTHO05D009651 8.9e-26 121.3 209 36.8
BcaB04g20407 Brassica carinata HOM05D007923 ORTHO05D009651 2.6e-25 119.8 123 49.6
BcaC05g29301 Brassica carinata HOM05D007923 ORTHO05D009651 2.6e-25 119.8 218 37.6
C05p55860 Brassica napus HOM05D007923 ORTHO05D009651 2.6e-25 119.8 218 37.6
BolC5t34255H Brassica oleracea HOM05D007923 ORTHO05D009651 2.6e-25 119.8 218 37.6
THA.LOC104799715 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 2.6e-25 119.8 130 43.1
BcaC09g48206 Brassica carinata HOM05D007923 ORTHO05D009651 3.4e-25 119.4 217 36.4
BraA05t22534Z Brassica rapa HOM05D007923 ORTHO05D009651 3.4e-25 119.4 209 37.3
BraA05t22533Z Brassica rapa HOM05D007923 ORTHO05D009651 4.4e-25 119.0 209 36.8
A05p37340 Brassica napus HOM05D007923 ORTHO05D009651 5.8e-25 118.6 209 36.8
BraA05t22531Z Brassica rapa HOM05D007923 ORTHO05D009651 5.8e-25 118.6 209 36.8
BcaB06g25567 Brassica carinata HOM05D007923 ORTHO05D009651 1.7e-24 117.1 209 35.9
BcaB06g25556 Brassica carinata HOM05D007923 ORTHO05D009651 3.8e-24 115.9 209 35.4
BraA05t22535Z Brassica rapa HOM05D007923 ORTHO05D009651 6.4e-24 115.2 209 35.9
BcaC05g29304 Brassica carinata HOM05D007923 ORTHO05D009651 3.2e-23 112.8 209 35.4
C05p55880 Brassica napus HOM05D007923 ORTHO05D009651 3.2e-23 112.8 209 35.4
BolC5t34257H Brassica oleracea HOM05D007923 ORTHO05D009651 3.2e-23 112.8 209 35.4
A05p37360 Brassica napus HOM05D007923 ORTHO05D009651 5.4e-23 112.1 204 35.8
C05p55890 Brassica napus HOM05D007923 ORTHO05D009651 1.3e-21 107.5 209 34.9
BolC5t34258H Brassica oleracea HOM05D007923 ORTHO05D009651 1.3e-21 107.5 209 34.9
BcaC09g48207 Brassica carinata HOM05D007923 ORTHO05D009651 2.3e-21 106.7 307 31.3
BolC1t05274H Brassica oleracea HOM05D007923 ORTHO05D009651 6.6e-21 105.1 205 35.6
BraA01t04147Z Brassica rapa HOM05D007923 ORTHO05D009651 8.7e-21 104.8 205 35.6
THA.LOC104810160 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 4.3e-20 102.4 117 44.4
CARHR043170 Cardamine hirsuta HOM05D007923 ORTHO05D009651 7.3e-20 101.7 124 40.3
BcaC05g29305 Brassica carinata HOM05D007923 ORTHO05D009651 1.1e-18 97.8 195 33.3
Thhalv10012072m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 2.4e-18 96.7 134 34.3
THA.LOC104824530 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.2e-17 94.4 111 42.3
Sp1g39520 Schrenkiella parvula HOM05D007923 ORTHO05D009651 4.5e-17 92.4 119 33.6
AT1G52970 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 9.9e-17 91.3 123 34.1
Carub.0001s4211 Capsella rubella HOM05D007923 ORTHO05D009651 9.9e-17 91.3 122 34.4
CARHR103140 Cardamine hirsuta HOM05D007923 ORTHO05D009651 9.9e-17 91.3 124 36.3
BcaC08g44686 Brassica carinata HOM05D007923 ORTHO05D009651 1.7e-16 90.5 83 51.8
AL1G61300 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 2.4e-15 86.7 123 32.5
COL.COLO4_10003 Corchorus olitorius HOM05D007923 ORTHO05D009651 4.6e-14 82.4 91 41.8
C06p22200 Brassica napus HOM05D007923 ORTHO05D009651 8.7e-13 78.2 204 30.4
C05p55900 Brassica napus HOM05D007923 ORTHO05D009651 1.1e-12 77.8 62 56.5
BolC6t37406H Brassica oleracea HOM05D007923 ORTHO05D009651 1.5e-12 77.4 204 30.4
Sp4g04720 Schrenkiella parvula HOM05D007888 ORTHO05D009976 3.6e-11 72.8 102 36.3
Prupe.2G101000 Prunus persica HOM05D008521 ORTHO05D000988 4.8e-11 72.4 184 28.3
Carub.0006s2294 Capsella rubella HOM05D007888 ORTHO05D009976 1.1e-10 71.2 98 30.6
Eucgr.C00224 Eucalyptus grandis HOM05D007923 ORTHO05D009651 1.1e-10 71.2 83 34.9
THA.LOC104817628 Tarenaya hassleriana HOM05D007923 ORTHO05D009976 1.1e-10 71.2 69 46.4
THA.LOC104813239 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.4e-10 70.9 69 46.4
Psat4g125080 Pisum sativum HOM05D010700 ORTHO05D012225 3.1e-10 69.7 152 24.3
Cpa.g.sc4.156 Carica papaya HOM05D007923 ORTHO05D009651 4.0e-10 69.3 120 31.7
Thecc.05G151700 Theobroma cacao HOM05D001614 ORTHO05D000988 5.3e-10 68.9 126 29.4
Thhalv10000516m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 1.2e-09 67.8 108 31.5
Cpa.g.sc127.52 Carica papaya HOM05D014073 ORTHO05D014166 3.4e-09 66.2 75 37.3
RcHm_v2.0_Chr5g0053201 Rosa chinensis HOM05D008521 ORTHO05D000988 5.8e-09 65.5 151 27.8
RcHm_v2.0_Chr5g0053221 Rosa chinensis HOM05D008521 ORTHO05D000988 5.8e-09 65.5 151 27.8
RcHm_v2.0_Chr5g0053241 Rosa chinensis HOM05D008521 ORTHO05D000988 5.8e-09 65.5 151 27.8
Sp4g04740 Schrenkiella parvula HOM05D007888 ORTHO05D009976 5.8e-09 65.5 140 30.7
Medtr2g438130 Medicago truncatula HOM05D010700 ORTHO05D012225 7.6e-09 65.1 153 22.9
RcHm_v2.0_Chr5g0053121 Rosa chinensis HOM05D008521 ORTHO05D000988 7.6e-09 65.1 151 27.8
RcHm_v2.0_Chr5g0053141 Rosa chinensis HOM05D008521 ORTHO05D000988 7.6e-09 65.1 151 27.8
RcHm_v2.0_Chr5g0053151 Rosa chinensis HOM05D008521 ORTHO05D000988 7.6e-09 65.1 151 27.8
RcHm_v2.0_Chr5g0053161 Rosa chinensis HOM05D008521 ORTHO05D000988 7.6e-09 65.1 151 27.8
RcHm_v2.0_Chr5g0053171 Rosa chinensis HOM05D008521 ORTHO05D000988 7.6e-09 65.1 151 27.8
RcHm_v2.0_Chr5g0053181 Rosa chinensis HOM05D008521 ORTHO05D000988 7.6e-09 65.1 151 27.8
RcHm_v2.0_Chr5g0053191 Rosa chinensis HOM05D008521 ORTHO05D000988 7.6e-09 65.1 151 27.8
RcHm_v2.0_Chr5g0053231 Rosa chinensis HOM05D008521 ORTHO05D000988 7.6e-09 65.1 151 27.8
RcHm_v2.0_Chr5g0053251 Rosa chinensis HOM05D008521 ORTHO05D000988 7.6e-09 65.1 151 27.8
RcHm_v2.0_Chr5g0053271 Rosa chinensis HOM05D008521 ORTHO05D000988 7.6e-09 65.1 151 27.8
Cpa.g.c23646.7 Carica papaya HOM05D014073 ORTHO05D014166 9.9e-09 64.7 136 25.0
Cpa.g.c23646 Carica papaya HOM05D014073 ORTHO05D014166 1.3e-08 64.3 136 25.0
Cpa.g.c23646.1 Carica papaya HOM05D014073 ORTHO05D014166 1.3e-08 64.3 136 25.0
Cpa.g.c23646.2 Carica papaya HOM05D014073 ORTHO05D014166 1.3e-08 64.3 136 25.0
Cpa.g.c23646.4 Carica papaya HOM05D014073 ORTHO05D014166 1.3e-08 64.3 136 25.0
Cpa.g.c23646.6 Carica papaya HOM05D014073 ORTHO05D014166 1.3e-08 64.3 136 25.0
Cpa.g.c25391 Carica papaya HOM05D014073 ORTHO05D014166 1.3e-08 64.3 136 25.0
Cpa.g.c35364 Carica papaya HOM05D014073 ORTHO05D014166 1.3e-08 64.3 136 25.0
Prupe.2G086800 Prunus persica HOM05D008521 ORTHO05D001803 1.3e-08 64.3 164 25.6
COL.COLO4_13737 Corchorus olitorius HOM05D001614 ORTHO05D000988 2.2e-08 63.5 81 33.3
AT3G30247 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 2.9e-08 63.2 108 32.4
BcaB04g21393 Brassica carinata HOM05D007888 ORTHO05D009976 4.9e-08 62.4 106 34.0
AT3G29797 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 6.4e-08 62.0 84 31.0
Carub.0003s0096 Capsella rubella HOM05D007888 ORTHO05D009976 8.4e-08 61.6 105 32.4
AL3G11060 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 1.4e-07 60.8 69 36.2
Prupe.2G086700 Prunus persica HOM05D008521 ORTHO05D001803 1.4e-07 60.8 168 26.8
AT2G21655 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 1.9e-07 60.5 106 27.4
Prupe.2G086900 Prunus persica HOM05D008521 ORTHO05D001803 1.9e-07 60.5 201 24.4
RcHm_v2.0_Chr5g0046951 Rosa chinensis HOM05D008521 ORTHO05D000988 1.9e-07 60.5 195 24.1
RcHm_v2.0_Chr5g0046961 Rosa chinensis HOM05D008521 ORTHO05D000988 1.9e-07 60.5 195 24.1
RcHm_v2.0_Chr5g0046971 Rosa chinensis HOM05D008521 ORTHO05D000988 1.9e-07 60.5 195 24.1
RcHm_v2.0_Chr5g0069271 Rosa chinensis HOM05D008521 ORTHO05D000988 1.9e-07 60.5 196 24.0
RcHm_v2.0_Chr5g0069281 Rosa chinensis HOM05D008521 ORTHO05D000988 1.9e-07 60.5 196 24.0
RcHm_v2.0_Chr5g0069291 Rosa chinensis HOM05D008521 ORTHO05D000988 1.9e-07 60.5 196 24.0
RcHm_v2.0_Chr5g0069301 Rosa chinensis HOM05D008521 ORTHO05D000988 1.9e-07 60.5 196 24.0
COL.COLO4_04380 Corchorus olitorius HOM05D002073 ORTHO05D001803 2.4e-07 60.1 166 28.9
RcHm_v2.0_Chr5g0051401 Rosa chinensis HOM05D008521 ORTHO05D000988 2.4e-07 60.1 163 25.2
AL4G10990 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 3.2e-07 59.7 84 31.0
AT3G01185 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 3.2e-07 59.7 69 34.8
COL.COLO4_08463 Corchorus olitorius HOM05D002073 ORTHO05D001803 4.2e-07 59.3 173 28.3
C01p52810 Brassica napus HOM05D007888 ORTHO05D009976 5.5e-07 58.9 139 26.6
BcaC09g48240 Brassica carinata HOM05D007888 ORTHO05D009976 9.3e-07 58.2 86 32.6
C01p52800 Brassica napus HOM05D007888 ORTHO05D009976 9.3e-07 58.2 139 27.3
BolC1t05218H Brassica oleracea HOM05D007888 ORTHO05D009976 9.3e-07 58.2 139 27.3
Gohir.D05G328233 Gossypium hirsutum HOM05D002073 ORTHO05D001803 9.3e-07 58.2 136 27.9
C01p52830 Brassica napus HOM05D007888 ORTHO05D009976 1.2e-06 57.8 86 31.4
C01p52850 Brassica napus HOM05D007888 ORTHO05D009976 1.2e-06 57.8 86 31.4
C01p52860 Brassica napus HOM05D007888 ORTHO05D009976 1.2e-06 57.8 86 31.4
BolC1t05223H Brassica oleracea HOM05D007888 ORTHO05D009976 1.2e-06 57.8 86 31.4
C01p52840 Brassica napus HOM05D007888 ORTHO05D009976 1.6e-06 57.4 86 31.4
BolC1t05221H Brassica oleracea HOM05D007888 ORTHO05D009976 1.6e-06 57.4 86 31.4
MD16G1259400 Malus domestica HOM05D012941 ORTHO05D009651 1.6e-06 57.4 102 31.4
BcaB04g21088 Brassica carinata HOM05D007888 ORTHO05D009976 2.1e-06 57.0 68 35.3
BolC1t05220H Brassica oleracea HOM05D007888 ORTHO05D009976 2.1e-06 57.0 86 31.4
RcHm_v2.0_Chr2g0133141 Rosa chinensis HOM05D012941 ORTHO05D009651 2.1e-06 57.0 71 33.8
BolC1t05222H Brassica oleracea HOM05D007888 ORTHO05D009976 2.7e-06 56.6 85 31.8
COL.COLO4_33207 Corchorus olitorius HOM05D001614 ORTHO05D000988 2.7e-06 56.6 77 35.1
Cpa.g.c39057 Carica papaya HOM05D014073 ORTHO05D014166 3.5e-06 56.2 111 27.9
Medtr6g007660 Medicago truncatula HOM05D010700 ORTHO05D012225 3.5e-06 56.2 153 22.9
RcHm_v2.0_Chr5g0051281 Rosa chinensis HOM05D008521 ORTHO05D000988 3.5e-06 56.2 195 23.1
C01p53020 Brassica napus HOM05D007888 ORTHO05D009976 4.6e-06 55.8 145 25.5
Ciclev10010294m.g Citrus clementina HOM05D002073 ORTHO05D001803 4.6e-06 55.8 71 35.2
BcaC09g48239 Brassica carinata HOM05D007888 ORTHO05D009976 6.0e-06 55.5 86 30.2
C01p52820 Brassica napus HOM05D007888 ORTHO05D009976 6.0e-06 55.5 86 31.4
BolC1t05219H Brassica oleracea HOM05D007888 ORTHO05D009976 6.0e-06 55.5 86 31.4
RcHm_v2.0_Chr5g0051291 Rosa chinensis HOM05D008521 ORTHO05D000988 6.0e-06 55.5 195 23.1
RcHm_v2.0_Chr5g0051301 Rosa chinensis HOM05D008521 ORTHO05D000988 6.0e-06 55.5 195 23.1
RcHm_v2.0_Chr5g0051311 Rosa chinensis HOM05D008521 ORTHO05D000988 6.0e-06 55.5 195 23.1
RcHm_v2.0_Chr5g0051321 Rosa chinensis HOM05D008521 ORTHO05D000988 6.0e-06 55.5 195 23.1
RcHm_v2.0_Chr5g0051331 Rosa chinensis HOM05D008521 ORTHO05D000988 6.0e-06 55.5 195 23.1
RcHm_v2.0_Chr5g0051341 Rosa chinensis HOM05D008521 ORTHO05D000988 6.0e-06 55.5 195 23.1
RcHm_v2.0_Chr5g0053391 Rosa chinensis HOM05D008521 ORTHO05D000988 6.0e-06 55.5 195 23.1
RcHm_v2.0_Chr5g0051391 Rosa chinensis HOM05D008521 ORTHO05D000988 7.9e-06 55.1 195 23.1
RcHm_v2.0_Chr5g0051411 Rosa chinensis HOM05D008521 ORTHO05D000988 7.9e-06 55.1 195 23.6
RcHm_v2.0_Chr5g0053401 Rosa chinensis HOM05D008521 ORTHO05D000988 7.9e-06 55.1 195 23.1
RcHm_v2.0_Chr5g0053411 Rosa chinensis HOM05D008521 ORTHO05D000988 7.9e-06 55.1 195 23.1
Sp2g20590 Schrenkiella parvula HOM05D007888 ORTHO05D009976 7.9e-06 55.1 130 24.6
Thecc.10G125700 Theobroma cacao HOM05D002073 ORTHO05D001803 7.9e-06 55.1 83 32.5


User provided reference genes

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