Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G13880 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 3.9e-87 324.7 158 100.0
AL5G13890 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 9.0e-84 313.5 156 97.4
AL5G13870 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 5.3e-76 287.7 158 88.6
AL5G13910 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 6.9e-76 287.3 139 97.1
AL5G13900 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 7.7e-75 283.9 213 70.0
AT2G04031 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 8.2e-61 237.3 156 75.0
AT2G04037 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.0e-58 230.3 156 72.4
AT2G04041 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.3e-58 229.9 156 73.1
AT1G47470 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.8e-53 212.2 172 61.6
AL3G23600 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 7.0e-52 207.6 172 61.6
AT1G45190 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.0e-51 206.1 171 60.2
AT3G11990 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.7e-50 203.0 171 58.5
Carub.0008s0480 Capsella rubella HOM05D007923 ORTHO05D009651 3.2e-49 198.7 171 57.3
AL1G53940 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 5.5e-49 198.0 159 60.4
AL9U10560 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 2.6e-46 189.1 158 60.8
CARHR086550 Cardamine hirsuta HOM05D007923 ORTHO05D009651 4.8e-45 184.9 173 55.5
Sp3g10220 Schrenkiella parvula HOM05D007923 ORTHO05D009651 1.3e-42 176.8 173 53.2
AT4G13261 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.7e-42 176.4 158 57.6
AT4G13263 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.7e-42 176.4 158 57.6
AT5G35405 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.7e-42 176.4 158 58.2
Thhalv10022160m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 1.6e-35 153.3 174 50.6
A05p37330 Brassica napus HOM05D007923 ORTHO05D009651 1.1e-33 147.1 174 48.9
BraA05t22530Z Brassica rapa HOM05D007923 ORTHO05D009651 1.1e-33 147.1 174 48.9
AT1G47450 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 7.3e-33 144.4 170 47.1
CARHR179580 Cardamine hirsuta HOM05D007923 ORTHO05D009651 1.6e-32 143.3 163 46.0
BcaC05g29300 Brassica carinata HOM05D007923 ORTHO05D009651 2.1e-32 142.9 174 46.6
C05p55840 Brassica napus HOM05D007923 ORTHO05D009651 2.1e-32 142.9 174 46.6
BolC5t34253H Brassica oleracea HOM05D007923 ORTHO05D009651 2.1e-32 142.9 174 46.6
Carub.0006s2829 Capsella rubella HOM05D007923 ORTHO05D009651 2.3e-31 139.4 174 46.6
BcaC05g29302 Brassica carinata HOM05D007923 ORTHO05D009651 4.4e-30 135.2 165 45.5
C05p55870 Brassica napus HOM05D007923 ORTHO05D009651 4.4e-30 135.2 165 45.5
BolC5t34256H Brassica oleracea HOM05D007923 ORTHO05D009651 4.4e-30 135.2 165 45.5
BcaC05g29301 Brassica carinata HOM05D007923 ORTHO05D009651 1.7e-29 133.3 174 45.4
C05p55860 Brassica napus HOM05D007923 ORTHO05D009651 1.7e-29 133.3 174 45.4
BolC5t34255H Brassica oleracea HOM05D007923 ORTHO05D009651 1.7e-29 133.3 174 45.4
BraA05t22534Z Brassica rapa HOM05D007923 ORTHO05D009651 1.7e-29 133.3 165 46.1
BraA05t22533Z Brassica rapa HOM05D007923 ORTHO05D009651 2.2e-29 132.9 165 45.5
BcaC09g48206 Brassica carinata HOM05D007923 ORTHO05D009651 2.9e-29 132.5 172 43.6
A05p37350 Brassica napus HOM05D007923 ORTHO05D009651 3.7e-29 132.1 165 44.8
BraA05t22532Z Brassica rapa HOM05D007923 ORTHO05D009651 3.7e-29 132.1 165 44.8
A05p37360 Brassica napus HOM05D007923 ORTHO05D009651 1.8e-28 129.8 160 46.2
BcaB06g25556 Brassica carinata HOM05D007923 ORTHO05D009651 3.2e-28 129.0 165 44.2
A05p37340 Brassica napus HOM05D007923 ORTHO05D009651 3.2e-28 129.0 165 44.2
BraA05t22531Z Brassica rapa HOM05D007923 ORTHO05D009651 3.2e-28 129.0 165 44.2
BcaB06g25567 Brassica carinata HOM05D007923 ORTHO05D009651 4.1e-28 128.6 165 44.8
BcaC05g29304 Brassica carinata HOM05D007923 ORTHO05D009651 4.1e-28 128.6 165 44.2
C05p55880 Brassica napus HOM05D007923 ORTHO05D009651 4.1e-28 128.6 165 44.2
BolC5t34257H Brassica oleracea HOM05D007923 ORTHO05D009651 4.1e-28 128.6 165 44.2
BraA05t22535Z Brassica rapa HOM05D007923 ORTHO05D009651 9.2e-28 127.5 165 43.6
BcaB04g20407 Brassica carinata HOM05D007923 ORTHO05D009651 3.5e-27 125.6 130 50.8
THA.LOC104799715 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.0e-26 124.0 164 40.2
C05p55890 Brassica napus HOM05D007923 ORTHO05D009651 3.0e-26 122.5 165 43.6
BolC5t34258H Brassica oleracea HOM05D007923 ORTHO05D009651 3.0e-26 122.5 165 43.6
BraA01t04147Z Brassica rapa HOM05D007923 ORTHO05D009651 1.4e-23 113.6 160 41.9
BcaC05g29305 Brassica carinata HOM05D007923 ORTHO05D009651 6.8e-23 111.3 151 42.4
THA.LOC104810160 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 2.4e-20 102.8 90 48.9
CARHR043170 Cardamine hirsuta HOM05D007923 ORTHO05D009651 1.6e-19 100.1 130 38.5
Thhalv10012072m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 2.7e-19 99.4 160 33.8
Sp1g39520 Schrenkiella parvula HOM05D007923 ORTHO05D009651 2.3e-18 96.3 130 33.1
BcaC08g44686 Brassica carinata HOM05D007923 ORTHO05D009651 2.5e-17 92.8 83 53.0
C06p22200 Brassica napus HOM05D007923 ORTHO05D009651 4.3e-17 92.0 148 39.2
Carub.0001s4211 Capsella rubella HOM05D007923 ORTHO05D009651 5.6e-17 91.7 129 33.3
THA.LOC104824530 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 9.5e-17 90.9 158 34.8
AT1G52970 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.2e-16 90.5 131 35.1
BolC6t37406H Brassica oleracea HOM05D007923 ORTHO05D009651 1.2e-16 90.5 148 38.5
CARHR103140 Cardamine hirsuta HOM05D007923 ORTHO05D009651 2.8e-16 89.4 155 32.9
BcaC09g48207 Brassica carinata HOM05D007923 ORTHO05D009651 4.7e-16 88.6 157 37.6
BolC1t05274H Brassica oleracea HOM05D007923 ORTHO05D009651 8.1e-16 87.8 157 36.9
COL.COLO4_10003 Corchorus olitorius HOM05D007923 ORTHO05D009651 4.0e-15 85.5 92 43.5
AL1G61300 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 2.6e-14 82.8 161 31.1
C05p55900 Brassica napus HOM05D007923 ORTHO05D009651 2.2e-13 79.7 62 58.1
Carub.0006s2294 Capsella rubella HOM05D007888 ORTHO05D009976 4.1e-12 75.5 141 29.1
Sp4g04720 Schrenkiella parvula HOM05D007888 ORTHO05D009976 6.0e-11 71.6 102 36.3
Eucgr.C00224 Eucalyptus grandis HOM05D007923 ORTHO05D009651 7.8e-11 71.2 83 34.9
THA.LOC104817628 Tarenaya hassleriana HOM05D007923 ORTHO05D009976 7.8e-11 71.2 69 46.4
THA.LOC104813239 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.0e-10 70.9 69 46.4
Cpa.g.sc4.156 Carica papaya HOM05D007923 ORTHO05D009651 3.0e-10 69.3 120 30.8
Cpa.g.sc127.52 Carica papaya HOM05D014073 ORTHO05D014166 1.5e-09 67.0 74 37.8
Thhalv10000516m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 1.9e-09 66.6 152 27.0
Carub.0003s0096 Capsella rubella HOM05D007888 ORTHO05D009976 7.3e-09 64.7 148 29.1
COL.COLO4_13737 Corchorus olitorius HOM05D001614 ORTHO05D000988 9.5e-09 64.3 78 34.6
AT2G21655 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 2.8e-08 62.8 150 23.3
BcaB04g21393 Brassica carinata HOM05D007888 ORTHO05D009976 2.8e-08 62.8 106 34.0
Thecc.05G151700 Theobroma cacao HOM05D001614 ORTHO05D000988 2.8e-08 62.8 150 28.7
AL4G10990 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 3.6e-08 62.4 150 25.3
AT3G30247 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 3.6e-08 62.4 152 26.3
AT3G29797 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 4.7e-08 62.0 84 31.0
Sp4g04740 Schrenkiella parvula HOM05D007888 ORTHO05D009976 6.2e-08 61.6 94 33.0
Cpa.g.c35364 Carica papaya HOM05D014073 ORTHO05D014166 1.1e-07 60.8 110 27.3
AL3G11060 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 1.4e-07 60.5 69 36.2
Cpa.g.c23646 Carica papaya HOM05D014073 ORTHO05D014166 1.4e-07 60.5 110 27.3
Cpa.g.c23646.1 Carica papaya HOM05D014073 ORTHO05D014166 1.4e-07 60.5 110 27.3
Cpa.g.c23646.2 Carica papaya HOM05D014073 ORTHO05D014166 1.4e-07 60.5 110 27.3
Cpa.g.c23646.4 Carica papaya HOM05D014073 ORTHO05D014166 1.4e-07 60.5 110 27.3
Cpa.g.c23646.6 Carica papaya HOM05D014073 ORTHO05D014166 1.4e-07 60.5 110 27.3
Cpa.g.c23646.7 Carica papaya HOM05D014073 ORTHO05D014166 1.4e-07 60.5 110 27.3
Cpa.g.c25391 Carica papaya HOM05D014073 ORTHO05D014166 1.4e-07 60.5 110 27.3
AT3G01185 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 2.3e-07 59.7 69 34.8
C01p52860 Brassica napus HOM05D007888 ORTHO05D009976 2.3e-07 59.7 151 27.8
C01p52810 Brassica napus HOM05D007888 ORTHO05D009976 3.1e-07 59.3 151 27.8
C01p52840 Brassica napus HOM05D007888 ORTHO05D009976 4.0e-07 58.9 151 27.8
C01p52830 Brassica napus HOM05D007888 ORTHO05D009976 6.8e-07 58.2 86 31.4
C01p52850 Brassica napus HOM05D007888 ORTHO05D009976 6.8e-07 58.2 86 31.4
BolC1t05221H Brassica oleracea HOM05D007888 ORTHO05D009976 6.8e-07 58.2 151 27.2
BolC1t05218H Brassica oleracea HOM05D007888 ORTHO05D009976 8.9e-07 57.8 151 27.8
BcaB04g21088 Brassica carinata HOM05D007888 ORTHO05D009976 1.2e-06 57.4 68 35.3
BcaC09g48240 Brassica carinata HOM05D007888 ORTHO05D009976 1.2e-06 57.4 151 27.8
C01p52800 Brassica napus HOM05D007888 ORTHO05D009976 1.2e-06 57.4 151 27.8
Thecc.10G125700 Theobroma cacao HOM05D002073 ORTHO05D001803 1.2e-06 57.4 83 33.7
Ciclev10010294m.g Citrus clementina HOM05D002073 ORTHO05D001803 1.5e-06 57.0 71 35.2
MD16G1259400 Malus domestica HOM05D012941 ORTHO05D009651 1.5e-06 57.0 64 37.5
RcHm_v2.0_Chr2g0133141 Rosa chinensis HOM05D012941 ORTHO05D009651 1.5e-06 57.0 71 33.8
C01p53020 Brassica napus HOM05D007888 ORTHO05D009976 2.0e-06 56.6 155 29.7
COL.COLO4_33207 Corchorus olitorius HOM05D001614 ORTHO05D000988 2.0e-06 56.6 77 35.1
BolC1t05220H Brassica oleracea HOM05D007888 ORTHO05D009976 2.6e-06 56.2 151 27.2
C01p52820 Brassica napus HOM05D007888 ORTHO05D009976 3.4e-06 55.8 151 27.8
BolC1t05219H Brassica oleracea HOM05D007888 ORTHO05D009976 3.4e-06 55.8 151 27.8
BolC1t05222H Brassica oleracea HOM05D007888 ORTHO05D009976 3.4e-06 55.8 157 26.8
Sp2g20590 Schrenkiella parvula HOM05D007888 ORTHO05D009976 3.4e-06 55.8 155 23.9
BolC1t05223H Brassica oleracea HOM05D007888 ORTHO05D009976 5.8e-06 55.1 150 25.3
BolC1t05244H Brassica oleracea HOM05D007888 ORTHO05D009976 5.8e-06 55.1 83 32.5
Migut.K01315 Erythranthe guttata HOM05D008521 ORTHO05D012225 5.8e-06 55.1 100 27.0
BcaC09g48239 Brassica carinata HOM05D007888 ORTHO05D009976 7.6e-06 54.7 151 26.5
Carub.0004s0517 Capsella rubella HOM05D007888 ORTHO05D009976 7.6e-06 54.7 87 28.7
Cpa.g.c39057 Carica papaya HOM05D014073 ORTHO05D014166 7.6e-06 54.7 102 26.5
Thhalv10005295m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 9.9e-06 54.3 145 26.9
Potri.004G114901 Populus trichocarpa HOM05D009187 ORTHO05D000988 9.9e-06 54.3 94 33.0


User provided reference genes

Program Settings