Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G13870 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 5.7e-86 320.9 158 100.0
AL5G13890 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 2.4e-76 288.9 156 89.7
AL5G13880 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.5e-75 286.2 158 88.6
AL5G13910 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 6.7e-71 270.8 139 92.8
AL5G13900 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.4e-68 263.1 213 66.2
AT2G04031 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 7.0e-60 234.2 156 72.4
AT2G04037 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 6.5e-58 227.6 156 72.4
AT2G04041 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 8.0e-56 220.7 156 68.6
AT1G45190 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.7e-51 205.7 171 61.4
AT1G47470 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.3e-50 203.4 172 59.9
AL3G23600 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.7e-50 203.0 172 61.0
AT3G11990 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 4.7e-48 194.9 171 56.7
Carub.0008s0480 Capsella rubella HOM05D007923 ORTHO05D009651 1.5e-46 189.9 171 56.1
AL1G53940 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.3e-45 186.8 159 57.9
AL9U10560 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 2.4e-44 182.6 158 59.5
CARHR086550 Cardamine hirsuta HOM05D007923 ORTHO05D009651 2.7e-43 179.1 173 54.9
Sp3g10220 Schrenkiella parvula HOM05D007923 ORTHO05D009651 5.0e-42 174.9 173 53.8
AT5G35405 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.2e-41 172.2 158 57.6
AT4G13261 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 9.5e-41 170.6 158 56.3
AT4G13263 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 9.5e-41 170.6 158 56.3
Thhalv10022160m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 1.0e-34 150.6 174 49.4
BcaC05g29300 Brassica carinata HOM05D007923 ORTHO05D009651 3.6e-32 142.1 174 46.6
C05p55840 Brassica napus HOM05D007923 ORTHO05D009651 3.6e-32 142.1 174 46.6
BolC5t34253H Brassica oleracea HOM05D007923 ORTHO05D009651 3.6e-32 142.1 174 46.6
Carub.0006s2829 Capsella rubella HOM05D007923 ORTHO05D009651 1.8e-31 139.8 173 46.2
A05p37330 Brassica napus HOM05D007923 ORTHO05D009651 5.2e-31 138.3 174 47.1
BraA05t22530Z Brassica rapa HOM05D007923 ORTHO05D009651 5.2e-31 138.3 174 47.1
CARHR179580 Cardamine hirsuta HOM05D007923 ORTHO05D009651 5.2e-31 138.3 163 46.0
AT1G47450 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 8.9e-31 137.5 170 46.5
BcaC09g48206 Brassica carinata HOM05D007923 ORTHO05D009651 6.4e-29 131.3 172 44.8
BcaC05g29301 Brassica carinata HOM05D007923 ORTHO05D009651 1.1e-28 130.6 174 44.8
C05p55860 Brassica napus HOM05D007923 ORTHO05D009651 1.1e-28 130.6 174 44.8
BolC5t34255H Brassica oleracea HOM05D007923 ORTHO05D009651 1.1e-28 130.6 174 44.8
BcaB06g25567 Brassica carinata HOM05D007923 ORTHO05D009651 1.8e-28 129.8 163 46.6
BcaC05g29302 Brassica carinata HOM05D007923 ORTHO05D009651 2.4e-28 129.4 161 45.3
C05p55870 Brassica napus HOM05D007923 ORTHO05D009651 2.4e-28 129.4 161 45.3
BolC5t34256H Brassica oleracea HOM05D007923 ORTHO05D009651 2.4e-28 129.4 161 45.3
BcaB06g25556 Brassica carinata HOM05D007923 ORTHO05D009651 9.2e-28 127.5 166 44.0
BraA05t22534Z Brassica rapa HOM05D007923 ORTHO05D009651 1.2e-27 127.1 161 45.3
BraA05t22533Z Brassica rapa HOM05D007923 ORTHO05D009651 1.6e-27 126.7 161 44.7
A05p37350 Brassica napus HOM05D007923 ORTHO05D009651 2.7e-27 125.9 161 44.1
BraA05t22532Z Brassica rapa HOM05D007923 ORTHO05D009651 2.7e-27 125.9 161 44.1
A05p37360 Brassica napus HOM05D007923 ORTHO05D009651 4.6e-27 125.2 160 45.0
A05p37340 Brassica napus HOM05D007923 ORTHO05D009651 1.0e-26 124.0 161 44.1
BraA05t22531Z Brassica rapa HOM05D007923 ORTHO05D009651 1.0e-26 124.0 161 44.1
BcaC05g29304 Brassica carinata HOM05D007923 ORTHO05D009651 3.0e-26 122.5 161 43.5
C05p55880 Brassica napus HOM05D007923 ORTHO05D009651 3.0e-26 122.5 161 43.5
BolC5t34257H Brassica oleracea HOM05D007923 ORTHO05D009651 3.0e-26 122.5 161 43.5
BraA05t22535Z Brassica rapa HOM05D007923 ORTHO05D009651 1.1e-25 120.6 161 42.9
BcaB04g20407 Brassica carinata HOM05D007923 ORTHO05D009651 1.5e-25 120.2 130 50.0
C05p55890 Brassica napus HOM05D007923 ORTHO05D009651 2.1e-24 116.3 161 42.9
BolC5t34258H Brassica oleracea HOM05D007923 ORTHO05D009651 2.1e-24 116.3 161 42.9
BolC1t05274H Brassica oleracea HOM05D007923 ORTHO05D009651 4.7e-24 115.2 160 43.1
BraA01t04147Z Brassica rapa HOM05D007923 ORTHO05D009651 1.4e-23 113.6 160 42.5
THA.LOC104799715 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 8.9e-23 110.9 167 36.5
CARHR043170 Cardamine hirsuta HOM05D007923 ORTHO05D009651 2.0e-19 99.8 147 36.1
Thhalv10012072m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 2.0e-19 99.8 132 36.4
BcaC05g29305 Brassica carinata HOM05D007923 ORTHO05D009651 2.7e-19 99.4 147 39.5
THA.LOC104810160 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 5.0e-18 95.1 90 44.4
Sp1g39520 Schrenkiella parvula HOM05D007923 ORTHO05D009651 1.1e-17 94.0 130 31.5
Carub.0001s4211 Capsella rubella HOM05D007923 ORTHO05D009651 3.3e-17 92.4 129 34.1
CARHR103140 Cardamine hirsuta HOM05D007923 ORTHO05D009651 1.2e-16 90.5 130 34.6
AT1G52970 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.6e-16 90.1 131 34.4
BcaC09g48207 Brassica carinata HOM05D007923 ORTHO05D009651 2.8e-16 89.4 155 38.7
THA.LOC104824530 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 8.1e-16 87.8 125 36.8
C06p22200 Brassica napus HOM05D007923 ORTHO05D009651 2.3e-15 86.3 143 39.9
AL1G61300 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 6.8e-15 84.7 131 32.1
BolC6t37406H Brassica oleracea HOM05D007923 ORTHO05D009651 6.8e-15 84.7 143 39.2
THA.LOC104803521 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 6.8e-15 84.7 87 41.4
BcaC08g44686 Brassica carinata HOM05D007923 ORTHO05D009651 4.4e-14 82.0 78 50.0
COL.COLO4_10003 Corchorus olitorius HOM05D007923 ORTHO05D009651 1.7e-13 80.1 162 33.3
C05p55900 Brassica napus HOM05D007923 ORTHO05D009651 1.7e-10 70.1 58 53.4
Eucgr.C00224 Eucalyptus grandis HOM05D007923 ORTHO05D009651 2.3e-10 69.7 76 35.5
Cpa.g.sc4.156 Carica papaya HOM05D007923 ORTHO05D009651 5.1e-10 68.6 120 30.0
Sp4g04720 Schrenkiella parvula HOM05D007888 ORTHO05D009976 6.6e-10 68.2 108 33.3
Carub.0006s2294 Capsella rubella HOM05D007888 ORTHO05D009976 8.6e-10 67.8 143 28.0
Eucgr.C00225 Eucalyptus grandis HOM05D008402 ORTHO05D009651 8.6e-10 67.8 77 35.1
THA.LOC104817628 Tarenaya hassleriana HOM05D007923 ORTHO05D009976 1.5e-09 67.0 69 44.9
THA.LOC104813239 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.9e-09 66.6 69 44.9
Cpa.g.sc127.52 Carica papaya HOM05D014073 ORTHO05D014166 3.3e-09 65.9 74 36.5
COL.COLO4_13737 Corchorus olitorius HOM05D001614 ORTHO05D000988 1.2e-08 63.9 83 34.9
Cpa.g.c35364 Carica papaya HOM05D014073 ORTHO05D014166 1.6e-08 63.5 113 27.4
Cpa.g.c23646 Carica papaya HOM05D014073 ORTHO05D014166 2.1e-08 63.2 113 27.4
Cpa.g.c23646.1 Carica papaya HOM05D014073 ORTHO05D014166 2.1e-08 63.2 113 27.4
Cpa.g.c23646.2 Carica papaya HOM05D014073 ORTHO05D014166 2.1e-08 63.2 113 27.4
Cpa.g.c23646.4 Carica papaya HOM05D014073 ORTHO05D014166 2.1e-08 63.2 113 27.4
Cpa.g.c23646.6 Carica papaya HOM05D014073 ORTHO05D014166 2.1e-08 63.2 113 27.4
Cpa.g.c23646.7 Carica papaya HOM05D014073 ORTHO05D014166 2.1e-08 63.2 113 27.4
Cpa.g.c25391 Carica papaya HOM05D014073 ORTHO05D014166 2.1e-08 63.2 113 27.4
Thhalv10000516m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 2.8e-08 62.8 152 27.0
Thecc.05G151700 Theobroma cacao HOM05D001614 ORTHO05D000988 2.8e-08 62.8 152 28.9
COL.COLO4_33207 Corchorus olitorius HOM05D001614 ORTHO05D000988 1.4e-07 60.5 135 30.4
AT2G21655 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 6.8e-07 58.2 150 23.3
AL4G10990 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 8.9e-07 57.8 151 25.2
Sp4g04740 Schrenkiella parvula HOM05D007888 ORTHO05D009976 8.9e-07 57.8 94 31.9
AL3G11060 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 1.2e-06 57.4 69 36.2
AT3G30247 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 1.2e-06 57.4 153 26.1
BcaB04g21393 Brassica carinata HOM05D007888 ORTHO05D009976 1.2e-06 57.4 108 32.4
AT3G01185 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 1.5e-06 57.0 69 34.8
AT3G29797 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 2.0e-06 56.6 85 29.4
Carub.0003s0096 Capsella rubella HOM05D007888 ORTHO05D009976 2.6e-06 56.2 144 27.1
MD16G1259400 Malus domestica HOM05D012941 ORTHO05D009651 3.4e-06 55.8 64 35.9
Cpa.g.c39057 Carica papaya HOM05D014073 ORTHO05D014166 4.4e-06 55.5 111 26.1
Ciclev10010294m.g Citrus clementina HOM05D002073 ORTHO05D001803 4.4e-06 55.5 71 33.8
RcHm_v2.0_Chr2g0133141 Rosa chinensis HOM05D012941 ORTHO05D009651 5.8e-06 55.1 115 27.8
Medtr2g438130 Medicago truncatula HOM05D010700 ORTHO05D012225 7.6e-06 54.7 79 30.4


User provided reference genes

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