Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 1.6e-188 662.5 318 100.0
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 2.4e-184 648.7 318 98.7
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 2.7e-180 635.2 318 95.6
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 6.9e-176 620.5 318 94.3
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 1.3e-169 599.7 318 89.9
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 1.1e-168 596.7 316 90.2
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 2.0e-167 592.4 318 88.7
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 1.3e-166 589.7 318 88.7
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 3.8e-166 588.2 318 88.4
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 3.8e-166 588.2 318 88.4
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 3.2e-165 585.1 318 88.1
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 5.5e-165 584.3 318 87.4
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 9.4e-165 583.6 318 87.7
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 2.3e-163 578.9 333 82.6
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 6.7e-163 577.4 318 87.1
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 6.7e-163 577.4 318 86.5
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 2.0e-162 575.9 318 86.2
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 1.3e-161 573.2 318 85.8
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 2.2e-161 572.4 318 85.8
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 5.5e-157 557.8 318 83.6
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 2.5e-149 532.3 316 77.8
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 3.0e-147 525.4 316 76.9
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 7.5e-146 520.8 319 75.5
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 2.8e-145 518.8 319 75.5
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 8.3e-145 517.3 316 75.6
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.8e-144 516.2 319 75.2
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 9.2e-144 513.8 316 74.7
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 1.2e-143 513.5 317 75.1
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 1.6e-143 513.1 316 76.3
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 1.6e-143 513.1 315 76.2
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 1.6e-143 513.1 316 74.1
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 4.5e-143 511.5 317 75.7
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 1.3e-142 510.0 318 74.8
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 1.3e-142 510.0 316 75.3
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 3.8e-142 508.4 316 74.7
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 3.8e-142 508.4 318 75.5
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 5.0e-142 508.1 317 74.4
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 1.1e-141 506.9 317 75.1
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 1.9e-141 506.1 317 73.8
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 4.3e-141 505.0 316 75.6
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 5.6e-141 504.6 316 75.3
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 7.3e-141 504.2 316 73.1
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 1.2e-140 503.4 316 74.7
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 1.2e-140 503.4 316 74.7
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 2.8e-140 502.3 321 73.5
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 6.1e-140 501.1 316 75.0
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 8.0e-140 500.7 321 74.5
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 1.0e-139 500.4 317 74.8
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 2.3e-139 499.2 316 72.5
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 4.0e-139 498.4 318 75.5
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 4.0e-139 498.4 338 69.8
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 5.2e-139 498.0 316 71.8
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 6.8e-139 497.7 316 73.1
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 9.8e-138 493.8 317 71.9
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 1.7e-137 493.0 321 72.0
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 1.7e-137 493.0 303 75.6
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 2.2e-137 492.7 317 73.2
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 2.9e-137 492.3 316 72.8
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 3.7e-137 491.9 316 72.8
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 6.4e-137 491.1 316 70.9
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 1.4e-136 490.0 320 72.8
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 2.4e-136 489.2 316 70.9
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 2.4e-136 489.2 316 71.8
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 4.1e-136 488.4 369 64.2
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 2.7e-135 485.7 316 72.2
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 1.3e-134 483.4 316 70.6
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 1.7e-134 483.0 316 69.0
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 3.9e-134 481.9 320 71.2
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 3.9e-134 481.9 316 71.2
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 6.6e-134 481.1 316 70.3
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 8.6e-134 480.7 317 70.0
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 1.1e-133 480.3 318 69.5
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.1e-133 480.3 316 69.9
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 1.5e-133 479.9 316 69.6
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.5e-133 479.9 316 70.9
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 1.5e-133 479.9 317 70.3
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 5.6e-133 478.0 316 68.4
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 5.6e-133 478.0 317 69.4
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 5.6e-133 478.0 319 69.3
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 7.3e-133 477.6 316 67.1
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 1.2e-132 476.9 319 69.9
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 2.1e-132 476.1 317 69.7
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 2.1e-132 476.1 316 69.9
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 2.8e-132 475.7 318 70.4
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 3.6e-132 475.3 316 69.0
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 3.6e-132 475.3 316 68.7
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 4.7e-132 474.9 313 69.6
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 4.7e-132 474.9 319 69.6
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 1.1e-131 473.8 368 62.2
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 1.4e-131 473.4 316 68.4
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 1.8e-131 473.0 316 69.0
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 4.0e-131 471.9 318 69.8
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 8.9e-131 470.7 316 70.9
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 1.2e-130 470.3 316 69.9
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.6e-130 469.2 316 69.9
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 4.4e-130 468.4 316 68.4
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 9.8e-130 467.2 316 67.7
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 1.1e-128 463.8 316 66.5
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.4e-128 463.4 316 66.5
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 2.4e-128 462.6 318 69.5
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 3.2e-128 462.2 316 68.4
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 2.7e-127 459.1 316 67.7
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 4.6e-127 458.4 309 70.2
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.0e-126 457.2 316 67.4
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 1.3e-126 456.8 323 65.3
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 3.0e-126 455.7 316 66.1
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 3.0e-126 455.7 321 66.4
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 4.3e-125 451.8 316 67.4
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 2.1e-124 449.5 318 66.0
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 6.8e-123 444.5 316 65.2
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 6.8e-123 444.5 390 56.9
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.9e-121 439.1 404 56.4
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 3.7e-121 438.7 316 67.1
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 4.1e-120 435.3 293 66.6
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 5.4e-120 434.9 289 70.6
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.0e-118 430.6 316 66.1
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 1.7e-118 429.9 337 60.8
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 1.1e-117 427.2 316 62.7
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 1.5e-117 426.8 316 63.0
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 3.6e-116 422.2 317 64.0
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 6.2e-116 421.4 225 88.9
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 8.9e-115 417.5 320 64.7
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 1.2e-114 417.2 284 70.1
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 3.4e-114 415.6 268 72.8
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 2.9e-113 412.5 325 60.6
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 8.4e-113 411.0 290 69.3
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.7e-110 403.3 316 60.4
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 6.9e-107 391.3 333 57.1
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 4.6e-103 378.6 324 58.6
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 1.0e-102 377.5 338 54.7
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 1.5e-101 373.6 319 56.4
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 9.6e-101 370.9 320 58.4
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 2.8e-100 369.4 318 56.0
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 1.4e-99 367.1 322 56.2
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 1.5e-98 363.6 305 59.3
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 7.9e-95 351.3 316 54.7
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 5.6e-93 345.1 244 68.4
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 6.2e-92 341.7 293 57.3
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 2.4e-88 329.7 354 47.5
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 2.8e-84 316.2 187 84.0
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 6.9e-83 311.6 211 73.5
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 1.7e-81 307.0 200 73.0
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.0e-73 281.2 183 72.1
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 3.8e-73 279.3 218 59.6
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 3.1e-67 259.6 165 72.1
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 5.0e-65 252.3 306 47.4
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 3.9e-62 242.7 151 76.8
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 1.8e-54 217.2 145 71.0
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 6.3e-52 208.8 140 67.1
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 4.2e-48 196.1 148 60.8
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 1.1e-43 181.4 105 86.7
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 1.1e-43 181.4 96 85.4
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 9.1e-43 178.3 130 64.6
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 4.2e-40 169.5 124 65.3
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 6.8e-38 162.2 109 67.0
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 1.3e-33 147.9 93 74.2
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 3.0e-30 136.7 69 87.0
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 2.6e-29 133.7 91 65.9
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 1.4e-27 127.9 72 84.7
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 6.6e-25 119.0 75 65.3
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 6.1e-23 112.5 66 72.7
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 8.0e-23 112.1 74 67.6
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 1.4e-22 111.3 165 40.0
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 1.3e-20 104.8 86 54.7
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 8.3e-20 102.1 57 73.7
BolC7t43945H Brassica oleracea HOM05D004085 ORTHO05D005189 7.5e-13 79.0 43 90.7
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 1.1e-11 75.1 42 78.6
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 5.1e-09 66.2 80 47.5
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 4.3e-08 63.2 54 53.7
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 8.9e-06 55.5 56 50.0


User provided reference genes

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