Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G13100 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 3.2e-184 648.3 332 100.0
AL5G13140 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 3.2e-184 648.3 332 100.0
AT2G03390 Arabidopsis thaliana HOM05D002318 ORTHO05D008744 2.7e-178 628.6 332 97.6
Carub.0005s0236 Capsella rubella HOM05D002318 ORTHO05D008744 9.5e-176 620.2 332 94.0
CARHR145730 Cardamine hirsuta HOM05D002318 ORTHO05D008744 2.8e-167 592.0 334 92.2
Thhalv10004578m.g Eutrema salsugineum HOM05D002318 ORTHO05D008744 1.0e-166 590.1 332 89.2
Sp2g14310 Schrenkiella parvula HOM05D002318 ORTHO05D008744 1.3e-161 573.2 334 88.6
BcaC06g34000 Brassica carinata HOM05D002318 ORTHO05D008744 3.0e-161 572.0 332 87.0
C07p33850 Brassica napus HOM05D002318 ORTHO05D008744 6.2e-159 564.3 334 86.8
BolC7t43899H Brassica oleracea HOM05D002318 ORTHO05D008744 1.8e-158 562.8 334 86.5
BcaC06g31184 Brassica carinata HOM05D002318 ORTHO05D008744 3.1e-158 562.0 334 86.5
BraA06t27203Z Brassica rapa HOM05D002318 ORTHO05D008744 1.5e-157 559.7 334 86.2
Aa31LG2G7170 Aethionema arabicum HOM05D002318 ORTHO05D008744 3.2e-147 525.4 344 78.8
THA.LOC104805183 Tarenaya hassleriana HOM05D002318 ORTHO05D008744 9.0e-134 480.7 335 75.8
A06p43150 Brassica napus HOM05D002318 ORTHO05D008744 2.5e-128 462.6 287 85.0
CiPaw.05G128000 Carya illinoinensis HOM05D002318 ORTHO05D008744 1.1e-118 430.6 341 68.3
RcHm_v2.0_Chr4g0438871 Rosa chinensis HOM05D002318 ORTHO05D008744 9.0e-118 427.6 339 67.0
FAN07G2980 Fragaria x ananassa HOM05D002318 ORTHO05D004713 2.6e-117 426.0 338 67.5
Cpa.g.sc1.87 Carica papaya HOM05D002318 ORTHO05D008744 5.8e-117 424.9 333 70.3
Psat2g128360 Pisum sativum HOM05D002318 ORTHO05D008744 7.6e-117 424.5 332 66.6
TAR622G0636 Trochodendron aralioides HOM05D002318 ORTHO05D004713 1.0e-116 424.1 332 68.4
MD16G1064900 Malus domestica HOM05D002318 ORTHO05D008744 1.3e-116 423.7 336 67.6
CANSAT54G0184 Cannabis sativa HOM05D002318 ORTHO05D008744 2.9e-116 422.5 272 75.7
Sabra10G0122900 Salix brachista HOM05D002318 ORTHO05D008744 4.9e-116 421.8 339 67.8
Atru.chr11.1690 Acer truncatum HOM05D002318 ORTHO05D008744 6.5e-116 421.4 335 67.2
Potri.010G161600 Populus trichocarpa HOM05D002318 ORTHO05D008744 1.1e-115 420.6 338 67.5
COL.COLO4_27936 Corchorus olitorius HOM05D002318 ORTHO05D008744 1.9e-115 419.9 340 65.6
Phvul.002G069400 Phaseolus vulgaris HOM05D002318 ORTHO05D008744 1.9e-115 419.9 343 65.0
FAN22G0051 Fragaria x ananassa HOM05D002318 ORTHO05D008744 2.5e-115 419.5 338 66.9
Haze_11934 Corylus avellana HOM05D002318 ORTHO05D008744 4.2e-115 418.7 341 66.3
Cfa008908 Carpinus fangiana HOM05D002318 ORTHO05D008744 5.5e-115 418.3 341 66.3
QL03p070830 Quercus lobata HOM05D002318 ORTHO05D008744 5.5e-115 418.3 342 66.4
Sc11g0002270 Simmondsia chinensis HOM05D002318 ORTHO05D008744 5.5e-115 418.3 338 63.6
Lj2g0021077 Lotus japonicus HOM05D002318 ORTHO05D008744 7.1e-115 417.9 342 64.0
TPR.G22412 Trifolium pratense HOM05D002318 ORTHO05D008744 7.1e-115 417.9 342 63.5
Thecc.02G336500 Theobroma cacao HOM05D002318 ORTHO05D008744 2.1e-114 416.4 337 66.2
PGR119G0925 Punica granatum HOM05D002318 ORTHO05D008744 2.7e-114 416.0 336 64.3
VMungo1215G2584 Vigna mungo HOM05D002318 ORTHO05D008744 4.6e-114 415.2 337 65.0
FAN17G2010 Fragaria x ananassa HOM05D002318 ORTHO05D008744 2.3e-113 412.9 349 64.8
Nitab4.5_0000334g0260 Nicotiana tabacum HOM05D002318 ORTHO05D008744 2.3e-113 412.9 334 64.7
Aqoxy3G03551 Aquilegia oxysepala HOM05D002318 ORTHO05D008744 3.9e-113 412.1 337 66.2
Ciclev10032054m.g Citrus clementina HOM05D002318 ORTHO05D008744 5.1e-113 411.8 334 66.5
Glyma.02G113500 Glycine max HOM05D002318 ORTHO05D008744 5.1e-113 411.8 343 63.8
Lalb_Chr17g0340981 Lupinus albus HOM05D002318 ORTHO05D008744 6.7e-113 411.4 341 62.5
Hund05860 Selenicereus undatus HOM05D002318 ORTHO05D008744 1.1e-112 410.6 334 65.3
PGSC0003DMG401028329 Solanum tuberosum HOM05D002318 ORTHO05D008744 1.5e-112 410.2 337 65.3
PGSC0003DMG402022110 Solanum tuberosum HOM05D002318 ORTHO05D008744 1.5e-112 410.2 337 65.3
MELO3C011434.2 Cucumis melo HOM05D002318 ORTHO05D008744 4.3e-112 408.7 337 64.7
TWI75G0802 Tripterygium wilfordii HOM05D002318 ORTHO05D008744 9.7e-112 407.5 275 74.5
CAN.G1340.13 Capsicum annuum HOM05D002318 ORTHO05D008744 1.6e-111 406.8 338 63.0
CsaV3_6G032440 Cucumis sativus L. HOM05D002318 ORTHO05D008744 2.8e-111 406.0 336 64.6
Ca_04907_v3 Cicer arietinum L. HOM05D002318 ORTHO05D008744 3.7e-111 405.6 337 62.6
HanXRQChr12g0362851 Helianthus annuus HOM05D002318 ORTHO05D008744 3.7e-111 405.6 322 65.5
Eucgr.G02464 Eucalyptus grandis HOM05D002318 ORTHO05D008744 4.8e-111 405.2 284 70.4
Sopen05g007450 Solanum pennellii HOM05D002318 ORTHO05D008744 1.1e-110 404.1 334 64.1
Duzib268G0798 Durio zibethinus HOM05D002318 ORTHO05D008744 2.4e-110 402.9 285 71.2
GSVIVG01012177001 Vitis vinifera HOM05D002318 ORTHO05D008744 2.6e-109 399.4 343 62.7
FAN12G0082 Fragaria x ananassa HOM05D002318 ORTHO05D008744 3.4e-109 399.1 338 65.1
arahy.Tifrunner.gnm1.ann1.T0481B Arachis hypogaea HOM05D002318 ORTHO05D008744 1.0e-108 397.5 338 63.3
arahy.Tifrunner.gnm1.ann1.T5ZGHX Arachis hypogaea HOM05D002318 ORTHO05D008744 1.0e-108 397.5 304 66.8
AUR62043182 Chenopodium quinoa HOM05D002318 ORTHO05D008744 3.8e-108 395.6 338 61.8
Lsat_1_v5_gn_8_48101 Lactuca sativa HOM05D002318 ORTHO05D004713 3.8e-108 395.6 324 64.2
Peaxi162Scf00314g00023 Petunia axillaris HOM05D002318 ORTHO05D008744 3.8e-108 395.6 377 58.4
Solyc05g012620.4 Solanum lycopersicum HOM05D002318 ORTHO05D008744 6.5e-108 394.8 273 71.1
Gorai.013G091200 Gossypium raimondii HOM05D002318 ORTHO05D008744 8.5e-108 394.4 281 69.0
MBI16_g06774_MAGBIO Magnolia biondii HOM05D002318 ORTHO05D008744 1.1e-107 394.0 281 71.5
Cc11_g12380 Coffea canephora HOM05D002318 ORTHO05D008744 1.2e-106 390.6 267 70.8
ATR0111G011 Amborella trichopoda HOM05D002318 ORTHO05D008744 1.6e-106 390.2 297 69.0
CSS0013540 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 1.6e-106 390.2 256 75.8
Oeu021096.1 Olea europaea HOM05D002318 ORTHO05D008744 2.7e-106 389.4 338 60.9
ClCG08G010240 Citrullus lanatus HOM05D002318 ORTHO05D008744 4.6e-106 388.7 374 58.6
Gohir.A13G079900 Gossypium hirsutum HOM05D002318 ORTHO05D008744 1.3e-105 387.1 340 60.9
Migut.L01223 Erythranthe guttata HOM05D002318 ORTHO05D008744 1.5e-104 383.6 294 64.6
Rhsim12G0076700 Rhododendron simsii HOM05D002318 ORTHO05D008744 5.7e-104 381.7 342 61.7
DCAR_027449 Daucus carota HOM05D002318 ORTHO05D008744 2.8e-103 379.4 273 70.3
Ah.13g073950 Amaranthus hybridus HOM05D002318 ORTHO05D008744 1.1e-102 377.5 300 64.0
Medtr5g043480 Medicago truncatula HOM05D002318 ORTHO05D008744 4.1e-102 375.6 336 59.8
EL10As3g23350 Beta vulgaris HOM05D002318 ORTHO05D008744 2.6e-101 372.9 308 60.7
vmacro01330 Vaccinium macrocarpon HOM05D002318 ORTHO05D008744 3.8e-100 369.0 366 56.8
ECA233G4874 Erigeron canadensis HOM05D002318 ORTHO05D008744 5.0e-100 368.6 315 61.6
CDE04G0061 Ceratophyllum demersum HOM05D002318 ORTHO05D008744 1.9e-99 366.7 303 62.0
Actinidia19922 Actinidia chinensis HOM05D002318 ORTHO05D008744 1.6e-98 363.6 339 59.3
Os08g0172200 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 1.6e-98 363.6 268 67.2
Gohir.D13G079700 Gossypium hirsutum HOM05D002318 ORTHO05D008744 2.0e-96 356.7 281 64.4
Prupe.1G282000 Prunus persica HOM05D002318 ORTHO05D008744 7.4e-96 354.8 336 61.3
AUR62038089 Chenopodium quinoa HOM05D002318 ORTHO05D008744 1.3e-95 354.0 334 57.5
SalBow2G2755 Salvia bowleyana HOM05D002318 ORTHO05D008744 4.5e-93 345.5 335 54.3
Manes.01G030400 Manihot esculenta HOM05D002318 ORTHO05D008744 1.4e-91 340.5 289 66.4
SEGI_16280 Sequoiadendron giganteum HOM05D002318 ORTHO05D008744 4.2e-91 339.0 273 63.4
unitig_22.g6902 Utricularia gibba HOM05D002318 ORTHO05D008744 4.2e-91 339.0 346 54.3
Nn3g17371 Nelumbo nucifera HOM05D002318 ORTHO05D008744 1.8e-89 333.6 228 73.7
Hma1.2p1_0354F.1_g133650 Hydrangea macrophylla HOM05D002318 ORTHO05D008744 1.7e-87 327.0 290 61.4
FvH4_4g30500 Fragaria vesca HOM05D002318 ORTHO05D008744 4.8e-87 325.5 281 65.5
Lj6C782T15 Lonicera japonica HOM05D002318 ORTHO05D008744 3.5e-85 319.3 234 67.9
Mapoly0001s0530 Marchantia polymorpha HOM05D002318 ORTHO05D008744 7.2e-83 311.6 248 60.1
Pp3c7_3960 Physcomitrium patens HOM05D002318 ORTHO05D008744 9.4e-83 311.2 252 59.5
Dinv34114 Davidia involucrata HOM05D002318 ORTHO05D008744 1.2e-82 310.8 279 62.4
Sed0004708 Sechium edule HOM05D002318 ORTHO05D008744 1.0e-81 307.8 274 63.1
SGA_v2.0_scaffold16G07752 Striga asiatica HOM05D002318 ORTHO05D008744 2.8e-79 299.7 272 55.5
AagrBONN_evm.TU.Sc2ySwM_117.1985 Anthoceros agrestis HOM05D002318 ORTHO05D008744 5.0e-76 288.9 292 49.7
Dinv16705 Davidia involucrata HOM05D002318 ORTHO05D004713 2.9e-68 263.1 217 66.8
PSO591G0040 Papaver somniferum HOM05D002318 ORTHO05D008744 7.2e-67 258.5 269 55.4
SMO115G0105 Selaginella moellendorffii HOM05D002318 ORTHO05D008744 2.6e-64 250.0 217 57.1
CBR_g27967 Chara braunii HOM05D002318 ORTHO05D008744 4.4e-64 249.2 251 50.2
Actinidia31948 Actinidia chinensis HOM05D002318 ORTHO05D008744 1.3e-63 247.7 280 49.6
FAN16G1553 Fragaria x ananassa HOM05D002318 ORTHO05D008744 3.7e-63 246.1 156 79.5
Aa31sc734G30 Aethionema arabicum HOM05D002318 ORTHO05D008744 5.4e-62 242.3 201 70.6
CSS0007300 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 1.5e-56 224.2 218 62.8
Glyma.01G055000 Glycine max HOM05D002318 ORTHO05D008744 3.4e-56 223.0 198 65.2
arahy.Tifrunner.gnm1.ann1.1U2S5X Arachis hypogaea HOM05D002318 ORTHO05D008744 1.4e-54 217.6 231 58.0
arahy.Tifrunner.gnm1.ann1.TF58FW Arachis hypogaea HOM05D002318 ORTHO05D008744 3.2e-54 216.5 231 58.0
CSS0032009 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 1.1e-46 191.4 233 47.2
Zm00001eb370310 Zea mays HOM05D002318 ORTHO05D008744 2.4e-46 190.3 217 52.5
Cre02.g113700 Chlamydomonas reinhardtii HOM05D002318 ORTHO05D008744 4.7e-42 176.0 272 40.1
PRCOL_00000845 Prasinoderma coloniale HOM05D002318 ORTHO05D008744 1.2e-37 161.4 254 35.8
CBR_g50304 Chara braunii HOM05D020303 ORTHO05D021299 5.1e-20 102.8 159 37.7
Glyma.01G054950 Glycine max HOM05D002318 ORTHO05D008744 3.1e-17 93.6 72 59.7
Os01g0764500 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 6.4e-15 85.9 63 60.3
arahy.Tifrunner.gnm1.ann1.QV9UMR Arachis hypogaea HOM05D000001 ORTHO05D000003 2.8e-10 70.5 46 67.4
Cfa025736 Carpinus fangiana HOM05D020303 ORTHO05D021299 4.5e-08 63.2 70 41.4
Lsat_1_v5_gn_5_151580 Lactuca sativa HOM05D002318 ORTHO05D008744 1.7e-07 61.2 56 57.1
CBR_g3150 Chara braunii HOM05D020303 ORTHO05D021299 3.2e-06 57.0 141 30.5


User provided reference genes

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