Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 1.0e-229 800.0 515 100.0
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 3.6e-214 748.4 520 91.7
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 1.0e-213 746.9 525 87.8
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 1.0e-192 677.2 525 80.0
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 1.5e-191 673.3 524 79.0
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 8.3e-187 657.5 518 84.4
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 5.2e-173 611.7 519 77.6
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 4.4e-172 608.6 519 77.5
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 4.4e-172 608.6 519 77.5
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 7.5e-172 607.8 520 78.3
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 1.7e-171 606.7 508 69.5
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 2.4e-170 602.8 520 77.9
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 6.0e-169 598.2 521 75.4
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 9.3e-138 494.6 559 59.4
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 6.1e-129 465.3 545 61.1
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 1.0e-128 464.5 548 62.4
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 4.1e-125 452.6 524 62.0
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.2e-124 451.1 558 56.8
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 4.5e-124 449.1 548 57.5
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 6.5e-123 445.3 551 57.5
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 6.5e-123 445.3 476 62.0
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 8.5e-123 444.9 480 61.9
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 1.4e-122 444.1 500 55.0
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 1.6e-121 440.7 560 57.1
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 7.9e-121 438.3 530 59.6
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 1.0e-120 438.0 550 56.0
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 1.4e-120 437.6 563 57.9
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 1.8e-120 437.2 536 59.5
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 3.0e-120 436.4 553 56.6
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 1.5e-119 434.1 525 59.0
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 2.0e-119 433.7 537 60.0
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 2.5e-119 433.3 547 53.0
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 5.7e-119 432.2 526 58.0
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 1.7e-118 430.6 526 57.8
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 1.4e-117 427.6 533 55.7
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 1.8e-117 427.2 552 52.0
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 1.8e-117 427.2 517 54.2
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 1.8e-117 427.2 542 55.9
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 6.9e-117 425.2 492 63.6
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 2.0e-116 423.7 522 58.4
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 5.9e-116 422.2 552 56.9
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 1.0e-115 421.4 543 54.1
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 6.5e-115 418.7 549 52.8
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 8.5e-115 418.3 540 58.0
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 2.5e-114 416.8 504 55.4
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 4.2e-114 416.0 557 52.4
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 7.2e-114 415.2 549 56.3
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 4.7e-113 412.5 571 51.5
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 7.9e-113 411.8 505 53.9
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 1.8e-112 410.6 519 54.9
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 1.8e-112 410.6 531 54.2
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 2.3e-112 410.2 540 57.2
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 2.3e-112 410.2 532 53.8
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 3.9e-112 409.5 548 53.8
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 5.1e-112 409.1 481 54.7
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 8.8e-112 408.3 567 57.3
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 3.3e-111 406.4 551 52.8
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 1.8e-109 400.6 500 53.0
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 7.0e-109 398.7 638 46.2
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 2.0e-108 397.1 534 50.6
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 5.9e-108 395.6 533 56.1
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 5.9e-108 395.6 516 54.8
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 7.7e-108 395.2 564 51.6
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 6.5e-107 392.1 556 54.3
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 1.9e-106 390.6 583 50.6
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 4.2e-106 389.4 562 54.3
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 7.2e-106 388.7 434 60.6
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 2.1e-105 387.1 541 50.6
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 2.1e-105 387.1 523 51.6
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 2.1e-105 387.1 554 50.0
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 2.7e-105 386.7 542 53.3
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 3.6e-105 386.3 459 58.0
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 2.3e-104 383.6 483 56.7
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 2.4e-101 373.6 567 44.8
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 5.3e-101 372.5 511 47.9
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 2.0e-100 370.5 484 55.6
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 1.7e-99 367.5 531 54.8
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 3.2e-98 363.2 592 44.8
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 9.4e-98 361.7 471 52.2
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 3.6e-97 359.8 463 51.4
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 4.7e-97 359.4 440 56.6
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 8.0e-97 358.6 333 62.2
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 1.4e-96 357.8 577 48.9
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 4.0e-96 356.3 585 51.8
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 6.8e-96 355.5 488 55.9
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 1.2e-95 354.8 548 45.3
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 1.7e-94 350.9 580 51.9
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 4.8e-94 349.4 518 47.5
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 8.3e-94 348.6 492 55.5
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 8.3e-94 348.6 331 62.2
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 1.1e-93 348.2 537 44.9
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 1.8e-93 347.4 521 46.3
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 5.3e-93 345.9 302 64.9
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 7.0e-93 345.5 487 53.0
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 2.7e-92 343.6 507 46.5
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 1.7e-91 340.9 534 44.8
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 5.0e-91 339.3 311 61.4
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 1.3e-86 324.7 518 43.2
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 2.3e-83 313.9 485 45.4
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 8.6e-83 312.0 528 49.4
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 1.3e-78 298.1 201 77.1
BcaC06g34021 Brassica carinata HOM05D004479 ORTHO05D005597 6.3e-78 295.8 237 68.4
BolC7t43874H Brassica oleracea HOM05D004479 ORTHO05D005597 8.3e-78 295.4 250 66.4
BraA06t27217Z Brassica rapa HOM05D004479 ORTHO05D005597 1.4e-77 294.7 255 64.3
BcaC06g31203 Brassica carinata HOM05D004479 ORTHO05D005597 1.6e-76 291.2 258 63.2
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 1.0e-75 288.5 204 74.5
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 1.1e-74 285.0 201 73.6
A06p43310 Brassica napus HOM05D004479 ORTHO05D005597 7.5e-71 272.3 281 57.3
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 1.1e-69 268.5 222 61.3
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 4.6e-68 263.1 424 50.0
C07p33640 Brassica napus HOM05D004479 ORTHO05D005597 2.5e-58 230.7 250 57.2
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 1.4e-56 224.9 395 52.4
Pp3c18_4030 Physcomitrium patens HOM05D004479 ORTHO05D005597 3.4e-55 220.3 307 43.0
Mapoly0029s0023 Marchantia polymorpha HOM05D004479 ORTHO05D005597 1.1e-48 198.7 316 41.5
Oeu062492.1 Olea europaea HOM05D004479 ORTHO05D005597 2.0e-47 194.5 223 49.3
SMO114G0145 Selaginella moellendorffii HOM05D004479 ORTHO05D005597 2.3e-43 181.0 201 47.8
AagrBONN_evm.TU.Sc2ySwM_117.2251 Anthoceros agrestis HOM05D004479 ORTHO05D005597 9.6e-42 175.6 215 46.5
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 8.1e-41 172.6 169 59.8
AagrBONN_evm.TU.Sc2ySwM_117.1357 Anthoceros agrestis HOM05D004479 ORTHO05D005597 3.1e-40 170.6 203 45.8
CARHR145470 Cardamine hirsuta HOM05D004479 ORTHO05D005597 4.4e-39 166.8 106 84.9
CBR_g41305 Chara braunii HOM05D004479 ORTHO05D005597 1.0e-35 155.6 204 41.7
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 1.3e-35 155.2 349 49.0
SEGI_11469 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 5.3e-32 143.3 118 57.6
CiPaw.01G090700 Carya illinoinensis HOM05D004479 ORTHO05D005597 1.1e-21 109.0 150 56.7
QL03p033126 Quercus lobata HOM05D004479 ORTHO05D005597 7.9e-20 102.8 74 71.6
Actinidia21652 Actinidia chinensis HOM05D004479 ORTHO05D005597 1.1e-18 99.0 65 70.8
Psat0s1762g0040 Pisum sativum HOM05D004479 ORTHO05D005597 1.6e-17 95.1 194 37.1
Aqoxy377s002 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 6.9e-16 89.7 158 46.8
SHI24407 Sapria himalayana HOM05D004479 ORTHO05D005597 7.6e-15 86.3 174 41.4
SEGI_18721 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 1.1e-13 82.4 90 46.7
Psat0s1227g0080 Pisum sativum HOM05D000020 ORTHO05D015801 2.5e-13 81.3 95 53.7
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 2.5e-13 81.3 133 39.8
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 3.2e-13 80.9 152 35.5
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 1.9e-10 71.6 39 92.3
C09p24010 Brassica napus HOM05D002960 ORTHO05D042139 1.9e-10 71.6 39 92.3
BolC9t55321H Brassica oleracea HOM05D002960 ORTHO05D042139 1.9e-10 71.6 39 92.3
COL.COLO4_31578 Corchorus olitorius HOM05D001810 ORTHO05D005662 3.3e-10 70.9 195 33.3
Psat7g008520 Pisum sativum HOM05D004479 ORTHO05D005597 3.3e-10 70.9 69 59.4
SHI31116 Sapria himalayana HOM05D004479 ORTHO05D005597 5.7e-10 70.1 46 67.4
QL05p046913 Quercus lobata HOM05D004479 ORTHO05D005597 1.4e-08 65.5 132 43.2
BcaC02g11491 Brassica carinata HOM05D019637 ORTHO05D018695 4.1e-08 63.9 84 53.6
C04p14790 Brassica napus HOM05D004479 ORTHO05D018695 4.1e-08 63.9 84 53.6
BolC4t23053H Brassica oleracea HOM05D004479 ORTHO05D018695 4.1e-08 63.9 84 53.6
Psat0s2660g0040 Pisum sativum HOM05D000020 ORTHO05D015801 5.3e-08 63.5 67 56.7
Peaxi162Scf00038g02640 Petunia axillaris HOM05D004479 ORTHO05D029161 6.9e-08 63.2 91 42.9
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 6.9e-08 63.2 61 60.7
SHI31115 Sapria himalayana HOM05D004479 ORTHO05D005597 9.0e-08 62.8 44 70.5
SHI42976 Sapria himalayana HOM05D004479 ORTHO05D005597 1.2e-07 62.4 140 33.6
SHI49595 Sapria himalayana HOM05D004479 ORTHO05D005597 2.0e-07 61.6 113 38.9
Haze_18674 Corylus avellana HOM05D004479 ORTHO05D005597 2.6e-07 61.2 39 79.5
Cpa.g.sc155.18 Carica papaya HOM05D004479 ORTHO05D005597 7.7e-07 59.7 91 47.3
Hma1.2p1_0370F.1_g138010 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 1.3e-06 58.9 51 58.8
SHI36675 Sapria himalayana HOM05D004479 ORTHO05D005597 2.2e-06 58.2 54 53.7
SHI50578 Sapria himalayana HOM05D004479 ORTHO05D005597 3.8e-06 57.4 113 35.4


User provided reference genes

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