Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G12310 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 6.5e-63 243.8 117 100.0
Carub.0007s2871 Capsella rubella HOM05D002342 ORTHO05D002407 1.1e-59 233.0 117 95.7
CARHR219530 Cardamine hirsuta HOM05D002342 ORTHO05D002407 2.0e-59 232.3 117 95.7
Thhalv10024181m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 5.7e-59 230.7 117 93.2
AL7G42760 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 8.2e-58 226.9 117 94.0
A08p06660 Brassica napus HOM05D002342 ORTHO05D002407 8.2e-58 226.9 117 91.5
BraA08t32682Z Brassica rapa HOM05D002342 ORTHO05D002407 8.2e-58 226.9 117 91.5
Aa31LG9G3890 Aethionema arabicum HOM05D002342 ORTHO05D002407 2.4e-57 225.3 117 91.5
Sp7g11520 Schrenkiella parvula HOM05D002342 ORTHO05D002407 2.4e-57 225.3 117 91.5
AT4G13750 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 1.2e-56 223.0 117 93.2
BcaB04g17657 Brassica carinata HOM05D002342 ORTHO05D002407 1.6e-56 222.6 117 88.9
BcaC07g37335 Brassica carinata HOM05D002342 ORTHO05D002407 5.9e-56 220.7 117 89.7
C08p07730 Brassica napus HOM05D002342 ORTHO05D002407 5.9e-56 220.7 117 89.7
BolC8t47622H Brassica oleracea HOM05D002342 ORTHO05D002407 5.9e-56 220.7 117 89.7
THA.LOC104804807 Tarenaya hassleriana HOM05D002342 ORTHO05D002407 3.1e-41 171.8 116 69.0
Cpa.g.sc1159.3 Carica papaya HOM05D002342 ORTHO05D002407 2.5e-30 135.6 117 50.4
Prupe.1G159200 Prunus persica HOM05D002342 ORTHO05D002407 6.1e-29 131.0 119 53.8
Sabra16G0200600 Salix brachista HOM05D002342 ORTHO05D002407 1.0e-28 130.2 120 53.3
RcHm_v2.0_Chr6g0275261 Rosa chinensis HOM05D002342 ORTHO05D002407 1.8e-28 129.4 118 52.5
Dinv38212 Davidia involucrata HOM05D002342 ORTHO05D002407 3.0e-28 128.6 119 55.5
Dinv27217 Davidia involucrata HOM05D002342 ORTHO05D002407 4.0e-28 128.3 119 56.3
FAN24G1108 Fragaria x ananassa HOM05D002342 ORTHO05D002407 4.0e-28 128.3 119 52.1
TWI09G0668 Tripterygium wilfordii HOM05D002342 ORTHO05D002407 5.2e-28 127.9 119 52.9
FvH4_2g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 1.5e-27 126.3 119 51.3
QL05p014435 Quercus lobata HOM05D002342 ORTHO05D002407 1.5e-27 126.3 121 54.5
QL05p014243 Quercus lobata HOM05D002342 ORTHO05D002407 2.0e-27 125.9 121 55.4
Atru.chr4.1622 Acer truncatum HOM05D002342 ORTHO05D002407 3.4e-27 125.2 120 51.7
Atru.chr4.1618 Acer truncatum HOM05D002342 ORTHO05D002407 4.4e-27 124.8 119 52.1
Haze_11627 Corylus avellana HOM05D002342 ORTHO05D002407 4.4e-27 124.8 120 53.3
GSVIVG01020920001 Vitis vinifera HOM05D002342 ORTHO05D002407 5.8e-27 124.4 120 53.3
QL05p014183 Quercus lobata HOM05D002342 ORTHO05D002407 7.5e-27 124.0 121 52.9
Potri.001G317200 Populus trichocarpa HOM05D002342 ORTHO05D002407 9.8e-27 123.6 120 51.7
MD04G1012900 Malus domestica HOM05D002342 ORTHO05D002407 1.3e-26 123.2 119 51.3
Cfa014941 Carpinus fangiana HOM05D002342 ORTHO05D002407 1.7e-26 122.9 120 55.0
Gohir.D02G113900 Gossypium hirsutum HOM05D002342 ORTHO05D002407 1.7e-26 122.9 118 55.9
Gorai.005G129600 Gossypium raimondii HOM05D002342 ORTHO05D002407 1.7e-26 122.9 118 55.9
Gohir.A03G095600 Gossypium hirsutum HOM05D002342 ORTHO05D002407 3.7e-26 121.7 118 54.2
Thecc.04G199700 Theobroma cacao HOM05D002342 ORTHO05D002407 6.4e-26 120.9 120 52.5
FAN15G0433 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.1e-25 120.2 120 49.2
MD04G1013100 Malus domestica HOM05D002342 ORTHO05D002407 1.1e-25 120.2 119 50.4
CANSAT78G2520 Cannabis sativa HOM05D002342 ORTHO05D002407 1.4e-25 119.8 120 48.3
CiPaw.01G119000 Carya illinoinensis HOM05D002342 ORTHO05D002407 1.9e-25 119.4 119 51.3
Atru.chr4.1627 Acer truncatum HOM05D002342 ORTHO05D002407 3.2e-25 118.6 120 49.2
Sc13g0000230 Simmondsia chinensis HOM05D002342 ORTHO05D002407 5.4e-25 117.9 117 51.3
RcHm_v2.0_Chr4g0414351 Rosa chinensis HOM05D002342 ORTHO05D002407 7.0e-25 117.5 118 50.0
Nn1g07933 Nelumbo nucifera HOM05D002342 ORTHO05D002407 9.2e-25 117.1 120 51.7
Haze_11629 Corylus avellana HOM05D002342 ORTHO05D002407 1.2e-24 116.7 120 52.5
Lj6C522G10 Lonicera japonica HOM05D002342 ORTHO05D002407 1.2e-24 116.7 121 51.2
Lj6C526T11 Lonicera japonica HOM05D002342 ORTHO05D002407 1.2e-24 116.7 121 50.4
Eucgr.A01634 Eucalyptus grandis HOM05D002342 ORTHO05D002407 1.6e-24 116.3 120 50.8
Eucgr.H02762 Eucalyptus grandis HOM05D002342 ORTHO05D002407 2.0e-24 115.9 121 52.9
Lj6C523G2 Lonicera japonica HOM05D002342 ORTHO05D002407 2.0e-24 115.9 121 50.4
Prupe.1G159000 Prunus persica HOM05D002342 ORTHO05D002407 2.0e-24 115.9 119 47.9
Eucgr.H02759 Eucalyptus grandis HOM05D002342 ORTHO05D002407 3.5e-24 115.2 120 53.3
SHI00031 Sapria himalayana HOM05D002342 ORTHO05D002407 6.0e-24 114.4 119 52.9
arahy.Tifrunner.gnm1.ann1.ZGTC82 Arachis hypogaea HOM05D002342 ORTHO05D002407 7.8e-24 114.0 118 49.2
FAN12G2750 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.0e-23 113.6 119 49.6
EL10Ac3g07477 Beta vulgaris HOM05D002342 ORTHO05D002407 1.3e-23 113.2 120 53.3
Duzib212G0344 Durio zibethinus HOM05D002342 ORTHO05D002407 1.3e-23 113.2 120 50.8
Medtr8g085280 Medicago truncatula HOM05D002342 ORTHO05D002407 1.3e-23 113.2 118 48.3
Eucgr.H02755 Eucalyptus grandis HOM05D002342 ORTHO05D002407 2.3e-23 112.5 120 50.8
FAN22G0412 Fragaria x ananassa HOM05D002342 ORTHO05D002407 2.3e-23 112.5 119 48.7
Eucgr.H02754 Eucalyptus grandis HOM05D002342 ORTHO05D002407 3.0e-23 112.1 120 51.7
Lalb_Chr12g0205541 Lupinus albus HOM05D002342 ORTHO05D002407 3.0e-23 112.1 118 47.5
Eucgr.H02757 Eucalyptus grandis HOM05D002342 ORTHO05D002407 3.9e-23 111.7 120 51.7
MBI04_g21151_MAGBIO Magnolia biondii HOM05D002342 ORTHO05D002407 3.9e-23 111.7 120 48.3
Ca_17971_v3 Cicer arietinum L. HOM05D002342 ORTHO05D002407 8.6e-23 110.5 118 49.2
COL.COLO4_20180 Corchorus olitorius HOM05D002342 ORTHO05D002407 1.1e-22 110.2 92 57.6
Eucgr.H02741 Eucalyptus grandis HOM05D002342 ORTHO05D002407 1.1e-22 110.2 120 49.2
Sed0007147 Sechium edule HOM05D002342 ORTHO05D002407 1.1e-22 110.2 120 46.7
AUR62020836 Chenopodium quinoa HOM05D002342 ORTHO05D002407 1.9e-22 109.4 118 48.3
ClCG05G003260 Citrullus lanatus HOM05D002342 ORTHO05D002407 1.9e-22 109.4 120 43.3
Lj6A523T33 Lonicera japonica HOM05D002342 ORTHO05D002407 2.5e-22 109.0 121 47.9
CSS0000956 Camellia sinensis var. sinensis HOM05D002342 ORTHO05D002407 3.3e-22 108.6 119 50.4
Psat7g074440 Pisum sativum HOM05D002342 ORTHO05D002407 3.3e-22 108.6 118 47.5
Hund05344 Selenicereus undatus HOM05D002342 ORTHO05D002407 3.3e-22 108.6 118 46.6
Ah.14g086370 Amaranthus hybridus HOM05D002342 ORTHO05D002407 4.3e-22 108.2 119 52.9
Peaxi162Scf00047g00342 Petunia axillaris HOM05D002342 ORTHO05D002407 4.3e-22 108.2 118 49.2
AUR62018583 Chenopodium quinoa HOM05D002342 ORTHO05D002407 5.6e-22 107.8 118 47.5
Hma1.2p1_0383F.1_g140370 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 7.3e-22 107.5 119 48.7
Lj6C517T2 Lonicera japonica HOM05D002342 ORTHO05D002407 7.3e-22 107.5 121 48.8
Lj6C525G9 Lonicera japonica HOM05D002342 ORTHO05D002407 7.3e-22 107.5 121 48.8
Sed0020750 Sechium edule HOM05D002342 ORTHO05D002407 7.3e-22 107.5 119 46.2
FAN07G2373 Fragaria x ananassa HOM05D002342 ORTHO05D002407 9.5e-22 107.1 119 47.1
Nitab4.5_0000401g0100 Nicotiana tabacum HOM05D002342 ORTHO05D002407 9.5e-22 107.1 118 47.5
SGA_v2.0_scaffold31G12585 Striga asiatica HOM05D002342 ORTHO05D002407 9.5e-22 107.1 118 46.6
Lj6C525G6 Lonicera japonica HOM05D002342 ORTHO05D002407 1.2e-21 106.7 121 47.9
MELO3C006307.2 Cucumis melo HOM05D002342 ORTHO05D002407 1.6e-21 106.3 114 45.6
CsaV3_3G010890 Cucumis sativus L. HOM05D002342 ORTHO05D002407 1.6e-21 106.3 114 46.5
MD04G1012800 Malus domestica HOM05D002342 ORTHO05D002407 1.6e-21 106.3 91 54.9
Oeu055768.2 Olea europaea HOM05D002342 ORTHO05D002407 1.6e-21 106.3 118 47.5
Manes.03G146000 Manihot esculenta HOM05D002342 ORTHO05D002407 2.1e-21 105.9 120 46.7
PGR083G1386 Punica granatum HOM05D002342 ORTHO05D002407 2.1e-21 105.9 120 47.5
TPR.G11869 Trifolium pratense HOM05D002342 ORTHO05D002407 2.1e-21 105.9 118 46.6
TAR365G0690 Trochodendron aralioides HOM05D002342 ORTHO05D002407 2.8e-21 105.5 121 47.1
Phvul.003G291200 Phaseolus vulgaris HOM05D002342 ORTHO05D002407 3.6e-21 105.1 117 47.0
Actinidia23411 Actinidia chinensis HOM05D002342 ORTHO05D002407 4.7e-21 104.8 118 48.3
TAR365G0670 Trochodendron aralioides HOM05D002342 ORTHO05D002407 4.7e-21 104.8 121 47.1
CAN.G1333.4 Capsicum annuum HOM05D002342 ORTHO05D002407 6.2e-21 104.4 119 44.5
CAN.G1333.6 Capsicum annuum HOM05D002342 ORTHO05D002407 6.2e-21 104.4 118 48.3
Glyma.08G111400 Glycine max HOM05D002342 ORTHO05D002407 8.0e-21 104.0 118 45.8
Lj4g0001754 Lotus japonicus HOM05D002342 ORTHO05D002407 8.0e-21 104.0 118 46.6
PSO017G5596 Papaver somniferum HOM05D002342 ORTHO05D002407 1.1e-20 103.6 120 45.8
Solyc09g092100.4 Solanum lycopersicum HOM05D002342 ORTHO05D002407 1.1e-20 103.6 119 47.9
Sopen09g034970 Solanum pennellii HOM05D002342 ORTHO05D002407 1.1e-20 103.6 119 47.9
vmacro00454 Vaccinium macrocarpon HOM05D002342 ORTHO05D002407 3.1e-20 102.1 119 45.4
Migut.N00402 Erythranthe guttata HOM05D002342 ORTHO05D002407 6.8e-20 100.9 118 44.9
Oeu045313.1 Olea europaea HOM05D002342 ORTHO05D002407 6.8e-20 100.9 92 51.1
PSO063G4028 Papaver somniferum HOM05D002342 ORTHO05D002407 8.9e-20 100.5 120 45.0
DCAR_002789 Daucus carota HOM05D002342 ORTHO05D002407 1.2e-19 100.1 120 45.0
Migut.N01843 Erythranthe guttata HOM05D002342 ORTHO05D002407 1.2e-19 100.1 119 46.2
FvH4_4g13660 Fragaria vesca HOM05D002342 ORTHO05D002407 1.2e-19 100.1 119 46.2
CAN.G1333.8 Capsicum annuum HOM05D002342 ORTHO05D002407 2.0e-19 99.4 119 45.4
ECA233G4700 Erigeron canadensis HOM05D002342 ORTHO05D002407 2.6e-19 99.0 119 43.7
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 4.4e-19 98.2 113 46.9
Lsat_1_v5_gn_6_60921 Lactuca sativa HOM05D002342 ORTHO05D002407 4.4e-19 98.2 119 42.9
Aqoxy2G03980 Aquilegia oxysepala HOM05D002342 ORTHO05D002407 9.8e-19 97.1 120 45.0
ECA233G4033 Erigeron canadensis HOM05D002342 ORTHO05D002407 1.7e-18 96.3 119 42.0
Rhsim09G0058500 Rhododendron simsii HOM05D002342 ORTHO05D002407 2.9e-18 95.5 119 42.0
VMungo1127G2260 Vigna mungo HOM05D002342 ORTHO05D002407 2.9e-18 95.5 118 42.4
Migut.N01844 Erythranthe guttata HOM05D002342 ORTHO05D002407 4.9e-18 94.7 92 51.1
CiPaw.01G119300 Carya illinoinensis HOM05D002342 ORTHO05D002407 6.4e-18 94.4 108 43.5
HanXRQChr11g0339061 Helianthus annuus HOM05D002342 ORTHO05D002407 8.3e-18 94.0 97 49.5
unitig_8.g4999 Utricularia gibba HOM05D002342 ORTHO05D002407 8.3e-18 94.0 98 48.0
Lj6A516T55 Lonicera japonica HOM05D002342 ORTHO05D002407 1.1e-17 93.6 138 41.3
PSO063G7363 Papaver somniferum HOM05D002342 ORTHO05D002407 1.9e-17 92.8 91 49.5
PSO017G1666 Papaver somniferum HOM05D002342 ORTHO05D002407 3.2e-17 92.0 91 49.5
HanXRQChr16g0498001 Helianthus annuus HOM05D002342 ORTHO05D002407 7.0e-17 90.9 92 50.0
HPP92_028111 Vanilla planifolia HOM05D002342 ORTHO05D002407 7.0e-17 90.9 119 39.5
HanXRQChr02g0059031 Helianthus annuus HOM05D002342 ORTHO05D002407 1.6e-16 89.7 119 40.3
Cc03_g08030 Coffea canephora HOM05D002342 ORTHO05D002407 2.7e-16 89.0 119 40.3
Lsat_1_v5_gn_6_78720 Lactuca sativa HOM05D002342 ORTHO05D002407 3.5e-16 88.6 118 39.8
SEGI_10632 Sequoiadendron giganteum HOM05D002342 ORTHO05D002407 3.5e-16 88.6 119 38.7
HPP92_003865 Vanilla planifolia HOM05D002342 ORTHO05D002407 4.6e-16 88.2 120 43.3
Lsat_1_v5_gn_6_60880 Lactuca sativa HOM05D002342 ORTHO05D002407 6.0e-16 87.8 92 46.7
Lsat_1_v5_gn_8_141841 Lactuca sativa HOM05D002342 ORTHO05D002407 1.7e-15 86.3 118 39.0
ECA233G6204 Erigeron canadensis HOM05D002342 ORTHO05D002407 2.3e-15 85.9 92 47.8
ECA246G4185 Erigeron canadensis HOM05D002342 ORTHO05D002407 2.3e-15 85.9 119 38.7
ATR0829G112 Amborella trichopoda HOM05D002342 ORTHO05D002407 5.1e-15 84.7 121 38.0
Lsat_1_v5_gn_4_177540 Lactuca sativa HOM05D002342 ORTHO05D002407 5.1e-15 84.7 118 38.1
Os03g0803700 Oryza sativa ssp. japonica HOM05D002342 ORTHO05D002407 1.1e-14 83.6 118 34.7
Mapoly0105s0052 Marchantia polymorpha HOM05D002342 ORTHO05D002407 2.3e-12 75.9 90 41.1
Zm00001eb061370 Zea mays HOM05D002342 ORTHO05D002407 4.0e-12 75.1 93 37.6
QL05p014631 Quercus lobata HOM05D002342 ORTHO05D002407 6.8e-12 74.3 77 51.9
RcHm_v2.0_Chr7g0213881 Rosa chinensis HOM05D002342 ORTHO05D002407 8.9e-12 73.9 120 35.8
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 3.7e-10 68.6 63 49.2
Pp3c21_20720 Physcomitrium patens HOM05D002342 ORTHO05D002407 8.3e-10 67.4 92 38.0
SMO337G0030 Selaginella moellendorffii HOM05D002342 ORTHO05D002407 1.1e-09 67.0 98 36.7
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 3.2e-09 65.5 62 46.8
Nitab4.5_0006215g0010 Nicotiana tabacum HOM05D002342 ORTHO05D002407 9.2e-09 63.9 76 44.7
Lj6A517T27 Lonicera japonica HOM05D002342 ORTHO05D002407 6.0e-08 61.2 86 41.9
Hma1.2p1_0383F.1_g140560 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 2.3e-07 59.3 57 50.9


User provided reference genes

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