Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 4.2e-36 154.1 73 100.0
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 1.2e-33 146.0 73 93.2
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 1.2e-33 146.0 73 93.2
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 1.2e-33 146.0 73 93.2
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 1.2e-33 146.0 73 93.2
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 1.2e-33 146.0 73 93.2
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 2.0e-33 145.2 73 91.8
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 1.3e-32 142.5 73 90.4
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 2.4e-31 138.3 73 90.4
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 2.4e-31 138.3 73 90.4
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 1.2e-30 136.0 75 86.7
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 1.2e-30 136.0 75 86.7
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 1.2e-30 136.0 75 86.7
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 1.6e-30 135.6 73 89.0
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 3.5e-30 134.4 74 86.5
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 3.5e-30 134.4 74 86.5
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 1.0e-29 132.9 75 84.0
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 1.3e-29 132.5 74 85.1
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 3.8e-29 131.0 75 84.0
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 8.5e-29 129.8 74 83.8
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 8.5e-29 129.8 74 83.8
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 1.9e-28 128.6 74 82.4
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 9.4e-28 126.3 75 80.0
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 9.4e-28 126.3 74 82.4
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 9.4e-28 126.3 74 81.1
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 4.7e-27 124.0 73 80.8
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 6.1e-27 123.6 76 77.6
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 6.1e-27 123.6 70 84.3
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 5.2e-26 120.6 70 80.0
A02p32930 Brassica napus HOM05D005857 ORTHO05D007193 1.1e-23 112.8 63 87.3
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 1.1e-23 112.8 73 69.9
BcaC07g41575 Brassica carinata HOM05D005857 ORTHO05D007193 1.8e-23 112.1 74 75.7
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 4.5e-22 107.5 73 67.1
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 5.9e-22 107.1 72 68.1
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 1.0e-21 106.3 63 74.6
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 2.9e-21 104.8 73 67.1
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 2.9e-21 104.8 63 71.4
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 2.9e-21 104.8 60 73.3
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 2.9e-21 104.8 60 73.3
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 2.9e-21 104.8 60 73.3
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 3.8e-21 104.4 71 64.8
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 3.8e-21 104.4 73 65.8
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 6.6e-21 103.6 67 68.7
AUR62040136 Chenopodium quinoa HOM05D005857 ORTHO05D007193 8.6e-21 103.2 67 74.6
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 8.6e-21 103.2 67 68.7
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 1.5e-20 102.4 73 64.4
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 1.5e-20 102.4 71 66.2
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 2.5e-20 101.7 69 66.7
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 2.5e-20 101.7 71 62.0
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 3.3e-20 101.3 58 74.1
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 4.2e-20 100.9 69 66.7
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 9.5e-20 99.8 59 72.9
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 1.2e-19 99.4 57 75.4
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 1.2e-19 99.4 57 75.4
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 1.2e-19 99.4 72 63.9
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.6e-19 99.0 63 66.7
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.6e-19 99.0 63 68.3
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 2.1e-19 98.6 73 61.6
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 2.1e-19 98.6 59 71.2
AUR62032483 Chenopodium quinoa HOM05D005857 ORTHO05D007193 2.1e-19 98.6 67 71.6
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 2.1e-19 98.6 61 68.9
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 2.1e-19 98.6 63 68.3
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 2.1e-19 98.6 63 68.3
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 2.1e-19 98.6 63 68.3
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 2.1e-19 98.6 59 71.2
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 2.8e-19 98.2 73 63.0
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 3.6e-19 97.8 73 64.4
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 4.7e-19 97.4 63 68.3
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 4.7e-19 97.4 58 70.7
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 6.1e-19 97.1 60 68.3
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 8.0e-19 96.7 63 66.7
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 8.0e-19 96.7 57 71.9
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 1.0e-18 96.3 59 71.2
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 1.4e-18 95.9 64 67.2
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 3.0e-18 94.7 58 69.0
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 3.0e-18 94.7 58 69.0
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 3.0e-18 94.7 71 62.0
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 4.0e-18 94.4 66 63.6
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 5.2e-18 94.0 58 70.7
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 6.8e-18 93.6 54 72.2
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 6.8e-18 93.6 73 63.0
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 1.2e-17 92.8 69 59.4
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 1.2e-17 92.8 59 67.8
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 1.5e-17 92.4 54 70.4
EL10Ac3g06399 Beta vulgaris HOM05D005857 ORTHO05D007193 4.4e-17 90.9 49 77.6
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 4.4e-17 90.9 53 73.6
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 5.7e-17 90.5 59 62.7
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 5.7e-17 90.5 68 61.8
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 9.8e-17 89.7 53 69.8
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.3e-16 89.4 55 69.1
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 1.3e-16 89.4 59 66.1
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 2.2e-16 88.6 51 72.5
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 3.7e-16 87.8 62 59.7
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 4.9e-16 87.4 60 65.0
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 4.9e-16 87.4 62 58.1
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 4.9e-16 87.4 59 66.1
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 6.3e-16 87.0 60 61.7
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 8.3e-16 86.7 60 63.3
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 8.3e-16 86.7 60 63.3
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 8.3e-16 86.7 60 58.3
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 8.3e-16 86.7 60 58.3
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 8.3e-16 86.7 70 55.7
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.4e-15 85.9 60 60.0
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 2.4e-15 85.1 57 66.7
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 3.2e-15 84.7 47 78.7
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 4.1e-15 84.3 58 62.1
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 7.0e-15 83.6 53 67.9
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 7.0e-15 83.6 54 68.5
HanXRQChr10g0285581 Helianthus annuus HOM05D005857 ORTHO05D007193 2.7e-14 81.6 59 62.7
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 3.5e-14 81.3 58 60.3
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 4.6e-14 80.9 46 73.9
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 7.8e-14 80.1 53 64.2
Nitab4.5_0008987g0050 Nicotiana tabacum HOM05D005857 ORTHO05D007193 2.3e-13 78.6 55 60.0
BolC8t49293H Brassica oleracea HOM05D005857 ORTHO05D007193 2.9e-13 78.2 37 91.9
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 3.3e-12 74.7 60 60.0
Nitab4.5_0004030g0040 Nicotiana tabacum HOM05D005857 ORTHO05D007193 6.1e-11 70.5 53 56.6
Zm00001eb182520 Zea mays HOM05D005857 ORTHO05D007193 1.8e-10 68.9 58 48.3
Zm00001eb353890 Zea mays HOM05D005857 ORTHO05D007193 2.3e-10 68.6 50 56.0
BcaB08g35768 Brassica carinata HOM05D005857 ORTHO05D007193 8.9e-10 66.6 44 75.0
Pp3c9_5250 Physcomitrium patens HOM05D005857 ORTHO05D007193 5.8e-09 63.9 57 49.1
GSVIVG01023132001 Vitis vinifera HOM05D005857 ORTHO05D007193 2.2e-08 62.0 30 83.3
Zm00001eb203220 Zea mays HOM05D005857 ORTHO05D007193 2.9e-08 61.6 51 47.1
Zm00001eb203730 Zea mays HOM05D005857 ORTHO05D007193 8.3e-08 60.1 50 46.0
Pp3c15_3960 Physcomitrium patens HOM05D005857 ORTHO05D007193 3.2e-07 58.2 48 54.2
AagrBONN_evm.TU.Sc2ySwM_369.408 Anthoceros agrestis HOM05D005857 ORTHO05D007193 1.6e-06 55.8 57 42.1
Mapoly0052s0008 Marchantia polymorpha HOM05D005857 ORTHO05D007193 7.8e-06 53.5 52 46.2


User provided reference genes

Program Settings