Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G11410 Arabidopsis lyrata HOM05D007103 ORTHO05D008948 9.9e-245 849.7 448 100.0
Carub.0005s0121 Capsella rubella HOM05D007103 ORTHO05D008948 2.5e-219 765.4 448 88.8
Sp2g13560 Schrenkiella parvula HOM05D007103 ORTHO05D008948 2.5e-216 755.4 454 89.2
AT2G02148 Arabidopsis thaliana HOM05D007103 ORTHO05D008948 1.4e-214 749.6 450 90.4
CARHR144820 Cardamine hirsuta HOM05D007103 ORTHO05D008948 1.1e-198 696.8 450 87.6
Thhalv10004194m.g Eutrema salsugineum HOM05D007103 ORTHO05D008948 2.0e-189 666.0 458 82.3
Aa31LG2G7810 Aethionema arabicum HOM05D007103 ORTHO05D008948 2.7e-189 665.6 453 81.9
BcaB07g30707 Brassica carinata HOM05D007103 ORTHO05D008948 1.0e-188 663.7 457 80.5
BraA09t37988Z Brassica rapa HOM05D007103 ORTHO05D008948 2.1e-186 656.0 457 79.4
BcaC04g21529 Brassica carinata HOM05D007103 ORTHO05D008948 4.7e-186 654.8 456 79.4
C09p30690 Brassica napus HOM05D007103 ORTHO05D008948 3.0e-185 652.1 456 78.7
A09p23820 Brassica napus HOM05D007103 ORTHO05D008948 1.3e-183 646.7 460 77.8
BolC9t55934H Brassica oleracea HOM05D007103 ORTHO05D008948 9.1e-182 640.6 460 77.6
THA.LOC104805941 Tarenaya hassleriana HOM05D007103 ORTHO05D008948 6.3e-175 617.8 462 73.8
GSVIVG01010248001 Vitis vinifera HOM05D007103 ORTHO05D008948 3.0e-148 529.3 469 64.8
Manes.10G065901 Manihot esculenta HOM05D007103 ORTHO05D008948 3.3e-147 525.8 469 64.6
TWI74G0969 Tripterygium wilfordii HOM05D007103 ORTHO05D008948 2.1e-146 523.1 474 62.2
BcaB07g30709 Brassica carinata HOM05D007103 ORTHO05D008948 1.9e-142 510.0 430 67.2
Thecc.02G296200 Theobroma cacao HOM05D007103 ORTHO05D008948 1.9e-139 500.0 465 64.5
MELO3C005211.2 Cucumis melo HOM05D007103 ORTHO05D008948 8.1e-138 494.6 467 62.5
Sed0022925 Sechium edule HOM05D007103 ORTHO05D008948 1.5e-136 490.3 468 61.5
Haze_01571 Corylus avellana HOM05D007103 ORTHO05D008948 9.9e-136 487.6 465 62.4
Cfa015108 Carpinus fangiana HOM05D007103 ORTHO05D008948 1.3e-135 487.3 465 61.7
CsaV3_5G017430 Cucumis sativus L. HOM05D007103 ORTHO05D008948 1.7e-135 486.9 467 61.5
COL.COLO4_27515 Corchorus olitorius HOM05D007103 ORTHO05D008948 3.8e-135 485.7 456 60.5
Prupe.1G342500 Prunus persica HOM05D007103 ORTHO05D008948 3.2e-134 482.6 480 58.8
PGR044G1063 Punica granatum HOM05D007103 ORTHO05D008948 4.2e-134 482.3 457 63.2
Dinv06214 Davidia involucrata HOM05D007103 ORTHO05D008948 9.3e-134 481.1 461 62.3
Gohir.D01G137900 Gossypium hirsutum HOM05D007103 ORTHO05D008948 9.3e-134 481.1 465 61.9
Gorai.002G168100 Gossypium raimondii HOM05D007103 ORTHO05D008948 9.3e-134 481.1 465 62.2
Sabra08G0108900 Salix brachista HOM05D007103 ORTHO05D008948 1.6e-133 480.3 456 58.8
Gohir.A01G145152 Gossypium hirsutum HOM05D007103 ORTHO05D008948 7.8e-133 478.0 465 61.5
TAR371G1171 Trochodendron aralioides HOM05D007103 ORTHO05D008948 1.3e-132 477.2 467 60.0
Lj3A854G74 Lonicera japonica HOM05D007103 ORTHO05D008948 1.8e-129 466.8 482 58.7
QL03p041867 Quercus lobata HOM05D007103 ORTHO05D008948 1.8e-129 466.8 461 62.5
RcHm_v2.0_Chr4g0446051 Rosa chinensis HOM05D007103 ORTHO05D008948 1.2e-128 464.2 473 60.3
Eucgr.B02623 Eucalyptus grandis HOM05D007103 ORTHO05D008948 2.6e-128 463.0 459 61.9
Ciclev10005118m.g Citrus clementina HOM05D007103 ORTHO05D008948 3.8e-127 459.1 402 66.2
HanXRQChr14g0446891 Helianthus annuus HOM05D007103 ORTHO05D008948 1.4e-126 457.2 459 59.0
PSO478G2004 Papaver somniferum HOM05D007103 ORTHO05D008948 1.4e-126 457.2 466 59.7
MD13G1010500 Malus domestica HOM05D007103 ORTHO05D008948 2.3e-124 449.9 487 55.6
Nn3g18722 Nelumbo nucifera HOM05D007103 ORTHO05D008948 3.9e-124 449.1 422 62.1
Potri.008G143700 Populus trichocarpa HOM05D007103 ORTHO05D008948 6.7e-124 448.4 429 58.3
MSTRG.2093 Avicennia marina HOM05D007103 ORTHO05D008948 8.7e-124 448.0 466 56.9
CSS0049146 Camellia sinensis var. sinensis HOM05D007103 ORTHO05D008948 1.1e-123 447.6 444 58.3
CANSAT78G0644 Cannabis sativa HOM05D007103 ORTHO05D008948 3.7e-122 442.6 463 58.5
Glyma.05G135400 Glycine max HOM05D007103 ORTHO05D008948 9.0e-121 438.0 467 56.1
arahy.Tifrunner.gnm1.ann1.U7H2Z0 Arachis hypogaea HOM05D007103 ORTHO05D008948 2.6e-120 436.4 472 56.6
ATR0618G149 Amborella trichopoda HOM05D007103 ORTHO05D008948 4.5e-120 435.6 464 55.2
Nitab4.5_0000129g0430 Nicotiana tabacum HOM05D007103 ORTHO05D008948 4.5e-120 435.6 472 58.1
arahy.Tifrunner.gnm1.ann1.CDY64E Arachis hypogaea HOM05D007103 ORTHO05D008948 7.6e-120 434.9 472 56.4
CDE08G0078 Ceratophyllum demersum HOM05D007103 ORTHO05D008948 2.2e-119 433.3 475 55.2
FAN17G1256 Fragaria x ananassa HOM05D007103 ORTHO05D008948 2.9e-119 433.0 475 57.3
FAN07G2615 Fragaria x ananassa HOM05D007103 ORTHO05D008948 4.2e-118 429.1 446 59.2
Sopen04g003720 Solanum pennellii HOM05D007103 ORTHO05D008948 7.1e-118 428.3 465 57.4
Rhsim04G0168800 Rhododendron simsii HOM05D007103 ORTHO05D008948 2.1e-117 426.8 527 51.6
Solyc04g008560.3 Solanum lycopersicum HOM05D007103 ORTHO05D008948 2.1e-117 426.8 465 57.2
PGSC0003DMG400031375 Solanum tuberosum HOM05D007103 ORTHO05D008948 2.7e-117 426.4 465 57.4
FAN12G1264 Fragaria x ananassa HOM05D007103 ORTHO05D008948 1.0e-116 424.5 474 56.8
Peaxi162Scf00329g00938 Petunia axillaris HOM05D007103 ORTHO05D008948 6.7e-116 421.8 464 56.7
Nitab4.5_0007973g0020 Nicotiana tabacum HOM05D007103 ORTHO05D008948 1.1e-115 421.0 468 55.8
HPP92_022082 Vanilla planifolia HOM05D007103 ORTHO05D008948 4.3e-115 419.1 469 55.2
DCAR_030327 Daucus carota HOM05D007103 ORTHO05D008948 3.7e-114 416.0 465 54.2
CiPaw.05G161900 Carya illinoinensis HOM05D007103 ORTHO05D008948 4.8e-114 415.6 323 67.5
Ca_18212_v3 Cicer arietinum L. HOM05D007103 ORTHO05D008948 1.4e-113 414.1 478 54.6
Migut.E00576 Erythranthe guttata HOM05D007103 ORTHO05D008948 1.3e-111 407.5 490 52.2
CAN.G458.2 Capsicum annuum HOM05D007103 ORTHO05D008948 1.4e-110 404.1 419 57.5
ECA246G2851 Erigeron canadensis HOM05D007103 ORTHO05D008948 1.9e-110 403.7 450 53.8
ClCG01G007020 Citrullus lanatus HOM05D007103 ORTHO05D008948 3.2e-110 402.9 341 63.0
SGA_v2.0_scaffold127G33990 Striga asiatica HOM05D007103 ORTHO05D008948 3.2e-110 402.9 459 52.9
unitig_8.g4025 Utricularia gibba HOM05D007103 ORTHO05D008948 3.2e-110 402.9 458 53.1
Psat7g086680 Pisum sativum HOM05D007103 ORTHO05D008948 4.2e-110 402.5 475 53.1
Lalb_Chr13g0293061 Lupinus albus HOM05D007103 ORTHO05D008948 5.5e-110 402.1 457 52.5
Lj4g0001083 Lotus japonicus HOM05D007103 ORTHO05D008948 2.1e-109 400.2 474 52.5
MBI06_g12320_MAGBIO Magnolia biondii HOM05D007103 ORTHO05D008948 5.1e-108 395.6 314 65.0
Lsat_1_v5_gn_3_27560 Lactuca sativa HOM05D007103 ORTHO05D008948 1.9e-107 393.7 453 55.2
Sc03g0005470 Simmondsia chinensis HOM05D007103 ORTHO05D008948 8.2e-106 388.3 453 53.2
AUR62003469 Chenopodium quinoa HOM05D007103 ORTHO05D008948 1.5e-104 384.0 451 51.9
Glyma.08G090600 Glycine max HOM05D007103 ORTHO05D008948 2.0e-104 383.6 397 55.9
TPR.G34765 Trifolium pratense HOM05D007103 ORTHO05D008948 2.1e-101 373.6 473 50.3
Actinidia32355 Actinidia chinensis HOM05D007103 ORTHO05D008948 4.3e-99 365.9 362 55.5
Aqoxy3G00022 Aquilegia oxysepala HOM05D007103 ORTHO05D008948 2.8e-98 363.2 398 55.0
Phvul.002G186800 Phaseolus vulgaris HOM05D007103 ORTHO05D008948 2.4e-97 360.1 449 49.0
vmacro08589 Vaccinium macrocarpon HOM05D007103 ORTHO05D008948 2.4e-97 360.1 345 58.0
AUR62017776 Chenopodium quinoa HOM05D007103 ORTHO05D008948 4.1e-97 359.4 426 51.2
Ciclev10010767m.g Citrus clementina HOM05D007103 ORTHO05D008948 2.7e-93 346.7 255 68.2
EL10Ac6g15409 Beta vulgaris HOM05D007103 ORTHO05D008948 1.0e-92 344.7 533 43.9
FvH4_4g36300 Fragaria vesca HOM05D007103 ORTHO05D008948 1.0e-92 344.7 348 56.0
PSO017G4620 Papaver somniferum HOM05D007103 ORTHO05D008948 1.3e-90 337.8 381 52.2
Zm00001eb228800 Zea mays HOM05D007103 ORTHO05D008948 1.7e-90 337.4 401 49.4
FAN22G0934 Fragaria x ananassa HOM05D007103 ORTHO05D008948 1.8e-89 334.0 430 48.1
VMungo0251G2627 Vigna mungo HOM05D007103 ORTHO05D008948 2.8e-82 310.1 390 49.2
Mapoly0001s0015 Marchantia polymorpha HOM05D007103 ORTHO05D008948 8.2e-82 308.5 492 41.1
SEGI_34932 Sequoiadendron giganteum HOM05D007103 ORTHO05D008948 2.0e-80 303.9 317 51.7
SalBow2G1702 Salvia bowleyana HOM05D007103 ORTHO05D008948 1.2e-75 288.1 278 57.6
Atru.chr11.1054 Acer truncatum HOM05D007103 ORTHO05D008948 3.4e-75 286.6 424 48.8
Pp3c6_26300 Physcomitrium patens HOM05D007103 ORTHO05D008948 9.7e-75 285.0 475 43.8
Pp3c5_2140 Physcomitrium patens HOM05D007103 ORTHO05D008948 1.4e-73 281.2 478 41.8
SMO358G0481 Selaginella moellendorffii HOM05D007103 ORTHO05D008948 7.0e-73 278.9 459 39.0
Actinidia25204 Actinidia chinensis HOM05D007103 ORTHO05D008948 3.7e-66 256.5 179 71.5
AagrBONN_evm.TU.Sc2ySwM_368.3256 Anthoceros agrestis HOM05D007103 ORTHO05D008948 8.0e-53 212.2 220 49.5
Cpa.g.sc2.105 Carica papaya HOM05D007103 ORTHO05D008948 3.7e-50 203.4 221 54.8
CBR_g70721 Chara braunii HOM05D007103 ORTHO05D008948 6.6e-47 192.6 264 42.0
Medtr5g010860 Medicago truncatula HOM05D007103 ORTHO05D008948 2.5e-46 190.7 176 60.8
Actinidia31381 Actinidia chinensis HOM05D007103 ORTHO05D008948 9.5e-46 188.7 394 42.1
Pp3c6_29570 Physcomitrium patens HOM05D007103 ORTHO05D008948 1.3e-31 141.7 204 43.6
Aa31LG1G6410 Aethionema arabicum HOM05D007103 ORTHO05D008948 3.8e-26 123.6 103 68.9
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 9.6e-22 109.0 220 40.9
Hund18263 Selenicereus undatus HOM05D007103 ORTHO05D008948 1.5e-19 101.7 197 40.1
Cpa.g.sc2.103 Carica papaya HOM05D007103 ORTHO05D008948 3.6e-13 80.5 62 67.7
CAN.G166.15 Capsicum annuum HOM05D007103 ORTHO05D008948 1.6e-08 65.1 102 37.3
Medtr6g043130 Medicago truncatula HOM05D007103 ORTHO05D008948 7.4e-06 56.2 45 57.8


User provided reference genes

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