Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G11050 Arabidopsis lyrata HOM05D007778 ORTHO05D009819 1.4e-102 376.3 190 100.0
AT2G01918 Arabidopsis thaliana HOM05D007778 ORTHO05D009819 1.5e-88 329.7 191 89.5
Carub.0005s0093 Capsella rubella HOM05D007778 ORTHO05D009819 3.4e-85 318.5 191 86.4
CARHR144520 Cardamine hirsuta HOM05D007778 ORTHO05D009819 1.3e-76 290.0 192 78.6
Sp5g21340 Schrenkiella parvula HOM05D007778 ORTHO05D009819 8.4e-68 260.8 191 72.8
BcaB05g24166 Brassica carinata HOM05D007778 ORTHO05D009819 2.1e-66 256.1 182 74.2
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 3.5e-66 255.4 191 70.2
BcaC03g14741 Brassica carinata HOM05D007778 ORTHO05D009819 1.0e-65 253.8 191 69.6
Thhalv10019189m.g Eutrema salsugineum HOM05D007778 ORTHO05D009819 4.4e-61 238.4 190 66.3
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 8.4e-60 234.2 187 66.8
BraA02t06417Z Brassica rapa HOM05D003087 ORTHO05D009819 8.4e-60 234.2 187 66.8
THA.LOC104823842 Tarenaya hassleriana HOM05D007778 ORTHO05D009819 2.8e-47 192.6 196 55.1
Aa31LG2G2990 Aethionema arabicum HOM05D007778 ORTHO05D009819 1.2e-29 134.0 111 66.7
Oeu032099.1 Olea europaea HOM05D007778 ORTHO05D009819 6.1e-26 121.7 153 44.4
CAN.G1228.14 Capsicum annuum HOM05D007778 ORTHO05D009819 7.4e-24 114.8 165 40.0
Lsat_1_v5_gn_4_110701 Lactuca sativa HOM05D007778 ORTHO05D009819 1.3e-23 114.0 153 40.5
TPR.G37414 Trifolium pratense HOM05D007778 ORTHO05D009819 2.8e-23 112.8 159 42.8
Duzib211G0615 Durio zibethinus HOM05D007778 ORTHO05D009819 3.7e-23 112.5 110 50.0
Migut.D01632 Erythranthe guttata HOM05D007778 ORTHO05D009819 3.7e-23 112.5 158 39.9
Nitab4.5_0001485g0010 Nicotiana tabacum HOM05D007778 ORTHO05D009819 3.7e-23 112.5 126 46.0
Thecc.04G114700 Theobroma cacao HOM05D007778 ORTHO05D009819 3.7e-23 112.5 110 49.1
MBI06_g15669_MAGBIO Magnolia biondii HOM05D007778 ORTHO05D009819 6.3e-23 111.7 169 38.5
Actinidia04816 Actinidia chinensis HOM05D001693 ORTHO05D001588 8.2e-23 111.3 124 46.8
HanXRQChr09g0270391 Helianthus annuus HOM05D007778 ORTHO05D009819 1.4e-22 110.5 110 50.9
Nitab4.5_0007160g0010 Nicotiana tabacum HOM05D007778 ORTHO05D009819 1.4e-22 110.5 126 46.0
PGSC0003DMG400024679 Solanum tuberosum HOM05D007778 ORTHO05D009819 1.4e-22 110.5 121 47.1
CDE05G2207 Ceratophyllum demersum HOM05D007778 ORTHO05D009819 1.8e-22 110.2 151 43.0
Gohir.D07G082800 Gossypium hirsutum HOM05D007778 ORTHO05D009819 1.8e-22 110.2 110 49.1
Gorai.001G088400 Gossypium raimondii HOM05D007778 ORTHO05D009819 1.8e-22 110.2 110 49.1
Os04g0523000 Oryza sativa ssp. japonica HOM05D007778 ORTHO05D009819 1.8e-22 110.2 127 44.9
Cc07_g09880 Coffea canephora HOM05D007778 ORTHO05D009819 2.4e-22 109.8 122 45.1
Gohir.A07G078000 Gossypium hirsutum HOM05D007778 ORTHO05D009819 5.3e-22 108.6 110 49.1
Ah.03g133980 Amaranthus hybridus HOM05D007778 ORTHO05D009819 6.9e-22 108.2 152 40.1
Aqoxy3G04229 Aquilegia oxysepala HOM05D007778 ORTHO05D009819 6.9e-22 108.2 150 40.7
Cpa.g.sc116.56 Carica papaya HOM05D007778 ORTHO05D009819 1.2e-21 107.5 107 48.6
AUR62037508 Chenopodium quinoa HOM05D007778 ORTHO05D009819 1.5e-21 107.1 110 47.3
Atru.chr1.1920 Acer truncatum HOM05D007778 ORTHO05D009819 2.0e-21 106.7 125 44.0
Ciclev10012879m.g Citrus clementina HOM05D007778 ORTHO05D009819 2.0e-21 106.7 153 38.6
Lalb_Chr15g0085401 Lupinus albus HOM05D007778 ORTHO05D009819 2.0e-21 106.7 157 36.3
Sabra17G0107900 Salix brachista HOM05D007778 ORTHO05D009819 2.0e-21 106.7 115 48.7
Haze_14055 Corylus avellana HOM05D007778 ORTHO05D009819 2.6e-21 106.3 110 48.2
Haze_14066 Corylus avellana HOM05D007778 ORTHO05D009819 2.6e-21 106.3 110 48.2
AUR62004744 Chenopodium quinoa HOM05D007778 ORTHO05D009819 4.5e-21 105.5 110 46.4
COL.COLO4_05993 Corchorus olitorius HOM05D007778 ORTHO05D009819 4.5e-21 105.5 110 47.3
arahy.Tifrunner.gnm1.ann1.0X1LIN Arachis hypogaea HOM05D007778 ORTHO05D009819 5.9e-21 105.1 159 38.4
arahy.Tifrunner.gnm1.ann1.U19ACF Arachis hypogaea HOM05D007778 ORTHO05D009819 5.9e-21 105.1 159 38.4
PSO782G0382 Papaver somniferum HOM05D007778 ORTHO05D009819 7.7e-21 104.8 110 49.1
CsaV3_5G020220 Cucumis sativus L. HOM05D007778 ORTHO05D009819 1.0e-20 104.4 110 46.4
Medtr3g064070 Medicago truncatula HOM05D007778 ORTHO05D009819 1.0e-20 104.4 122 45.1
MELO3C025069.2 Cucumis melo HOM05D007778 ORTHO05D009819 1.7e-20 103.6 110 46.4
RcHm_v2.0_Chr3g0487781 Rosa chinensis HOM05D007778 ORTHO05D009819 1.7e-20 103.6 130 41.5
Nn4g24886 Nelumbo nucifera HOM05D007778 ORTHO05D009819 2.2e-20 103.2 176 38.6
TWI74G0094 Tripterygium wilfordii HOM05D007778 ORTHO05D009819 2.2e-20 103.2 187 39.0
Dinv17427 Davidia involucrata HOM05D007778 ORTHO05D009819 2.9e-20 102.8 95 52.6
Glyma.11G204300 Glycine max HOM05D007778 ORTHO05D009819 2.9e-20 102.8 180 37.8
Prupe.3G011900 Prunus persica HOM05D007778 ORTHO05D009819 2.9e-20 102.8 110 45.5
Psat4g221240 Pisum sativum HOM05D007778 ORTHO05D009819 3.8e-20 102.4 122 42.6
ClCG01G008280 Citrullus lanatus HOM05D007778 ORTHO05D009819 5.0e-20 102.1 110 46.4
Manes.01G118400 Manihot esculenta HOM05D007778 ORTHO05D009819 6.5e-20 101.7 109 46.8
SalBow7G4718 Salvia bowleyana HOM05D007778 ORTHO05D009819 8.5e-20 101.3 124 41.1
MD09G1282000 Malus domestica HOM05D007778 ORTHO05D009819 1.4e-19 100.5 110 44.5
VMungo0540G2068 Vigna mungo HOM05D007778 ORTHO05D009819 1.4e-19 100.5 160 38.1
EL10Ac4g08900 Beta vulgaris HOM05D007778 ORTHO05D009819 1.9e-19 100.1 126 42.1
CSS0000221 Camellia sinensis var. sinensis HOM05D007778 ORTHO05D009819 1.9e-19 100.1 112 46.4
FvH4_1g27614 Fragaria vesca HOM05D007778 ORTHO05D009819 1.9e-19 100.1 110 42.7
FAN28G0539 Fragaria x ananassa HOM05D007778 ORTHO05D009819 1.9e-19 100.1 110 42.7
PSO063G5463 Papaver somniferum HOM05D007778 ORTHO05D009819 2.5e-19 99.8 158 36.7
Potri.017G129700 Populus trichocarpa HOM05D007778 ORTHO05D009819 7.2e-19 98.2 126 41.3
Zm00001eb077030 Zea mays HOM05D007778 ORTHO05D009819 7.2e-19 98.2 109 47.7
Rhsim08G0144800 Rhododendron simsii HOM05D007778 ORTHO05D009819 9.4e-19 97.8 153 39.2
PGR102G3280 Punica granatum HOM05D007778 ORTHO05D009819 1.2e-18 97.4 145 36.6
Glyma.18G046700 Glycine max HOM05D007778 ORTHO05D009819 2.7e-18 96.3 185 36.2
Phvul.006G084300 Phaseolus vulgaris HOM05D007778 ORTHO05D009819 3.6e-18 95.9 122 41.0
unitig_736.g22611 Utricularia gibba HOM05D007778 ORTHO05D009819 3.6e-18 95.9 159 35.8
FAN28G2555 Fragaria x ananassa HOM05D007778 ORTHO05D009819 4.6e-18 95.5 106 42.5
QL02p054670 Quercus lobata HOM05D007778 ORTHO05D009819 1.0e-17 94.4 109 45.0
Lj5P133T80 Lonicera japonica HOM05D007778 ORTHO05D009819 2.3e-17 93.2 112 42.9
CANSAT78G1962 Cannabis sativa HOM05D007778 ORTHO05D009819 3.0e-17 92.8 109 42.2
Lj6g0006010 Lotus japonicus HOM05D007778 ORTHO05D009819 6.7e-17 91.7 147 35.4
Eucgr.C02546 Eucalyptus grandis HOM05D007778 ORTHO05D009819 1.5e-16 90.5 134 38.1
Eucgr.C02480 Eucalyptus grandis HOM05D007778 ORTHO05D009819 3.3e-16 89.4 151 37.1
GSVIVG01000799001 Vitis vinifera HOM05D007778 ORTHO05D009819 3.3e-16 89.4 74 58.1
FAN26G2882 Fragaria x ananassa HOM05D007778 ORTHO05D009819 1.3e-15 87.4 102 41.2
Eucgr.I00539 Eucalyptus grandis HOM05D007778 ORTHO05D009819 1.1e-11 74.3 88 43.2
Sed0002702 Sechium edule HOM05D007778 ORTHO05D009819 9.4e-11 71.2 158 34.2
CiPaw.03G008500 Carya illinoinensis HOM05D007778 ORTHO05D009819 1.2e-10 70.9 158 36.7
CDE02G0449 Ceratophyllum demersum HOM05D004209 ORTHO05D004970 3.0e-09 66.2 104 33.7
MD09G1282100 Malus domestica HOM05D007778 ORTHO05D009819 6.7e-09 65.1 79 40.5
AUR62014619 Chenopodium quinoa HOM05D004209 ORTHO05D004970 5.7e-08 62.0 110 30.9
AUR62044485 Chenopodium quinoa HOM05D004209 ORTHO05D004970 5.7e-08 62.0 110 30.9
ATR0618G409 Amborella trichopoda HOM05D007778 ORTHO05D009819 2.2e-07 60.1 77 40.3
Aqoxy4G02128 Aquilegia oxysepala HOM05D004209 ORTHO05D004970 2.2e-07 60.1 97 33.0
Thhalv10026172m.g Eutrema salsugineum HOM05D004209 ORTHO05D004970 3.7e-07 59.3 116 31.0
SEGI_28796 Sequoiadendron giganteum HOM05D004209 ORTHO05D004970 6.3e-07 58.5 110 29.1
unitig_21.g20230 Utricularia gibba HOM05D004209 ORTHO05D004970 1.1e-06 57.8 95 31.6
Ciclev10016525m.g Citrus clementina HOM05D004209 ORTHO05D004970 1.4e-06 57.4 102 30.4
Aa31LG9G9260 Aethionema arabicum HOM05D004209 ORTHO05D004970 2.4e-06 56.6 97 30.9
AL7G32830 Arabidopsis lyrata HOM05D004209 ORTHO05D004970 2.4e-06 56.6 97 28.9
CARHR227860 Cardamine hirsuta HOM05D004209 ORTHO05D004970 2.4e-06 56.6 131 26.7
Rhsim02G0115100 Rhododendron simsii HOM05D004209 ORTHO05D004970 2.4e-06 56.6 102 30.4
BcaB01g01890 Brassica carinata HOM05D004209 ORTHO05D004970 3.1e-06 56.2 97 29.9
BcaC04g21382 Brassica carinata HOM05D004209 ORTHO05D004970 3.1e-06 56.2 97 29.9
A09p25550 Brassica napus HOM05D004209 ORTHO05D004970 3.1e-06 56.2 97 29.9
C09p32460 Brassica napus HOM05D004209 ORTHO05D004970 3.1e-06 56.2 97 29.9
BolC9t56091H Brassica oleracea HOM05D004209 ORTHO05D004970 3.1e-06 56.2 97 29.9
BraA09t38130Z Brassica rapa HOM05D004209 ORTHO05D004970 3.1e-06 56.2 97 29.9
Carub.0007s2015 Capsella rubella HOM05D004209 ORTHO05D004970 3.1e-06 56.2 97 28.9
CDE11G0355 Ceratophyllum demersum HOM05D004209 ORTHO05D004970 3.1e-06 56.2 106 27.4
Thhalv10028939m.g Eutrema salsugineum HOM05D004209 ORTHO05D004970 3.1e-06 56.2 97 29.9
Pp3c5_4110 Physcomitrium patens HOM05D004209 ORTHO05D004970 3.1e-06 56.2 102 30.4
Sp6g03810 Schrenkiella parvula HOM05D004209 ORTHO05D004970 3.1e-06 56.2 97 29.9
vmacro15841 Vaccinium macrocarpon HOM05D004209 ORTHO05D004970 4.1e-06 55.8 102 31.4
AT4G21280 Arabidopsis thaliana HOM05D004209 ORTHO05D004970 5.3e-06 55.5 97 27.8
Aa31LG6G3270 Aethionema arabicum HOM05D004209 ORTHO05D004970 7.0e-06 55.1 97 27.8
AL6G48780 Arabidopsis lyrata HOM05D004209 ORTHO05D004970 7.0e-06 55.1 97 28.9
BcaNung03829 Brassica carinata HOM05D004209 ORTHO05D004970 7.0e-06 55.1 116 27.6
COL.COLO4_31686 Corchorus olitorius HOM05D004209 ORTHO05D004970 7.0e-06 55.1 116 28.4
DCAR_028152 Daucus carota HOM05D004209 ORTHO05D004970 7.0e-06 55.1 97 30.9
Lj3g0019605 Lotus japonicus HOM05D004209 ORTHO05D004970 7.0e-06 55.1 110 28.2
Actinidia11832 Actinidia chinensis HOM05D004209 ORTHO05D004970 9.1e-06 54.7 97 29.9
BcaC09g51238 Brassica carinata HOM05D004209 ORTHO05D004970 9.1e-06 54.7 116 29.3
C01p15220 Brassica napus HOM05D004209 ORTHO05D004970 9.1e-06 54.7 116 29.3
BolC1t01473H Brassica oleracea HOM05D004209 ORTHO05D004970 9.1e-06 54.7 116 29.3
Cpa.g.sc139.72 Carica papaya HOM05D004209 ORTHO05D004970 9.1e-06 54.7 97 28.9
Migut.M01264 Erythranthe guttata HOM05D004209 ORTHO05D004970 9.1e-06 54.7 110 27.3
THA.LOC104812569 Tarenaya hassleriana HOM05D004209 ORTHO05D004970 9.1e-06 54.7 110 27.3


User provided reference genes

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