Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G11020 Arabidopsis lyrata HOM05D007520 ORTHO05D009417 3.4e-127 458.4 235 100.0
AT2G01905 Arabidopsis thaliana HOM05D007520 ORTHO05D009417 1.4e-117 426.4 235 93.2
CARHR144480 Cardamine hirsuta HOM05D007520 ORTHO05D009417 3.1e-112 408.7 229 90.0
Thhalv10005705m.g Eutrema salsugineum HOM05D007520 ORTHO05D009417 3.7e-110 401.7 232 87.9
Sp2g13330 Schrenkiella parvula HOM05D007520 ORTHO05D009417 1.6e-108 396.4 233 85.4
BolC7t43791H Brassica oleracea HOM05D007520 ORTHO05D009417 2.3e-107 392.5 234 87.6
BraA06t27270Z Brassica rapa HOM05D007520 ORTHO05D009417 4.7e-105 384.8 234 86.3
C07p32740 Brassica napus HOM05D007520 ORTHO05D009417 3.4e-103 378.6 234 85.5
A06p43940 Brassica napus HOM05D007520 ORTHO05D009417 9.9e-103 377.1 236 84.3
BcaC06g31264 Brassica carinata HOM05D007520 ORTHO05D009417 1.5e-90 336.7 208 84.6
Aa31LG2G8010 Aethionema arabicum HOM05D007520 ORTHO05D009417 9.0e-88 327.4 234 75.2
THA.LOC104824117 Tarenaya hassleriana HOM05D007520 ORTHO05D009417 5.1e-83 311.6 222 71.2
Gorai.008G169800 Gossypium raimondii HOM05D007520 ORTHO05D009417 4.2e-69 265.4 233 59.7
Sed0012329 Sechium edule HOM05D007520 ORTHO05D009417 1.2e-68 263.8 222 60.4
MELO3C020056.2 Cucumis melo HOM05D007520 ORTHO05D009417 2.1e-68 263.1 222 59.9
Duzib268G1867 Durio zibethinus HOM05D007520 ORTHO05D009417 1.0e-67 260.8 222 60.8
CsaV3_5G012990 Cucumis sativus L. HOM05D007520 ORTHO05D009417 1.3e-67 260.4 222 59.5
Actinidia11793 Actinidia chinensis HOM05D007520 ORTHO05D009417 1.1e-66 257.3 198 66.2
TAR374G0082 Trochodendron aralioides HOM05D000504 ORTHO05D000403 2.5e-66 256.1 211 62.6
Nn4g24547 Nelumbo nucifera HOM05D007520 ORTHO05D009417 7.4e-66 254.6 225 57.8
TPR.G35527 Trifolium pratense HOM05D007520 ORTHO05D009417 7.4e-66 254.6 221 58.8
ECA246G0416 Erigeron canadensis HOM05D007520 ORTHO05D009417 1.6e-65 253.4 225 59.6
TWI53G0076 Tripterygium wilfordii HOM05D007520 ORTHO05D009417 2.2e-65 253.1 221 58.4
Manes.17G089333 Manihot esculenta HOM05D007520 ORTHO05D009417 3.7e-65 252.3 229 58.1
Hma1.2p1_0095F.1_g047520 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 8.2e-65 251.1 198 64.6
COL.COLO4_27582 Corchorus olitorius HOM05D007520 ORTHO05D009417 2.4e-64 249.6 199 65.3
Prupe.1G338000 Prunus persica HOM05D007520 ORTHO05D009417 4.1e-64 248.8 224 56.7
CANSAT78G2519 Cannabis sativa HOM05D007520 ORTHO05D009417 5.3e-64 248.4 223 58.7
Ciclev10016556m.g Citrus clementina HOM05D007520 ORTHO05D009417 9.0e-64 247.7 212 60.8
Lj2g0009613 Lotus japonicus HOM05D007520 ORTHO05D009417 9.0e-64 247.7 217 59.9
Medtr1g038820 Medicago truncatula HOM05D007520 ORTHO05D009417 9.0e-64 247.7 221 56.6
PGR042G3173 Punica granatum HOM05D007520 ORTHO05D009417 9.0e-64 247.7 220 58.2
Psat6g100600 Pisum sativum HOM05D007520 ORTHO05D009417 1.2e-63 247.3 221 57.0
PSO017G5472 Papaver somniferum HOM05D007520 ORTHO05D009417 4.5e-63 245.4 228 55.7
Aqoxy5G01264 Aquilegia oxysepala HOM05D007520 ORTHO05D009417 5.9e-63 245.0 223 58.7
CiPaw.06G058600 Carya illinoinensis HOM05D007520 ORTHO05D009417 5.9e-63 245.0 221 59.7
Migut.L00619 Erythranthe guttata HOM05D007520 ORTHO05D009417 5.9e-63 245.0 221 56.1
PSO478G1043 Papaver somniferum HOM05D007520 ORTHO05D009417 5.0e-62 241.9 233 53.6
MD13G1015700 Malus domestica HOM05D007520 ORTHO05D009417 2.5e-61 239.6 223 56.5
QL03p039135 Quercus lobata HOM05D007520 ORTHO05D009417 1.6e-60 236.9 199 62.3
RcHm_v2.0_Chr4g0433681 Rosa chinensis HOM05D007520 ORTHO05D009417 2.1e-60 236.5 224 55.4
FvH4_4g26110 Fragaria vesca HOM05D007520 ORTHO05D009417 2.7e-60 236.1 223 55.2
Phvul.003G001900 Phaseolus vulgaris HOM05D007520 ORTHO05D009417 3.9e-59 232.3 231 52.8
HanXRQChr12g0379401 Helianthus annuus HOM05D007520 ORTHO05D009417 5.1e-59 231.9 212 56.6
PGSC0003DMG400041336 Solanum tuberosum HOM05D001905 ORTHO05D001820 8.8e-59 231.1 221 57.9
Sopen04g032100 Solanum pennellii HOM05D007520 ORTHO05D009417 7.4e-58 228.0 221 56.6
Solyc04g078500.1 Solanum lycopersicum HOM05D007520 ORTHO05D009417 3.7e-57 225.7 221 56.6
arahy.Tifrunner.gnm1.ann1.RL07R4 Arachis hypogaea HOM05D007520 ORTHO05D009417 3.1e-56 222.6 209 58.4
Carub.0005s0089 Capsella rubella HOM05D007520 ORTHO05D009417 4.1e-56 222.2 128 87.5
Nitab4.5_0010118g0020 Nicotiana tabacum HOM05D007520 ORTHO05D009417 6.9e-56 221.5 225 55.6
Nitab4.5_0004339g0060 Nicotiana tabacum HOM05D007520 ORTHO05D009417 1.5e-55 220.3 224 56.2
CAN.G1812.4 Capsicum annuum HOM05D007520 ORTHO05D009417 5.9e-55 218.4 221 54.3
Thecc.02G303900 Theobroma cacao HOM05D007520 ORTHO05D009417 3.8e-54 215.7 167 64.1
SGA_v2.0_scaffold172G39028 Striga asiatica HOM05D007520 ORTHO05D009417 5.0e-54 215.3 222 51.8
VMungo0251G1805 Vigna mungo HOM05D007520 ORTHO05D009417 6.5e-54 214.9 220 55.0
Sc15g0004470 Simmondsia chinensis HOM05D007520 ORTHO05D009417 9.4e-53 211.1 221 49.3
Atru.chr11.1007 Acer truncatum HOM05D007520 ORTHO05D009417 3.0e-51 206.1 185 57.3
FAN12G3032 Fragaria x ananassa HOM05D007520 ORTHO05D009417 3.1e-48 196.1 174 57.5
FAN12G3090 Fragaria x ananassa HOM05D007520 ORTHO05D009417 3.1e-48 196.1 174 57.5
Zm00001eb010100 Zea mays HOM05D007520 ORTHO05D009417 5.3e-48 195.3 213 46.0
Carub.0005s0090 Capsella rubella HOM05D007520 ORTHO05D009417 9.1e-48 194.5 113 89.4
EL10Ac1g01972 Beta vulgaris HOM05D007520 ORTHO05D009417 3.5e-47 192.6 225 49.3
Lalb_Chr10g0094861 Lupinus albus HOM05D007520 ORTHO05D009417 4.5e-47 192.2 183 56.3
Lsat_1_v5_gn_5_170921 Lactuca sativa HOM05D007520 ORTHO05D009417 1.9e-45 186.8 198 52.5
Ah.11g041100 Amaranthus hybridus HOM05D007520 ORTHO05D009417 5.2e-43 178.7 224 46.4
FAN17G2852 Fragaria x ananassa HOM05D007520 ORTHO05D009417 5.2e-43 178.7 200 49.5
Glyma.14G224300 Glycine max HOM05D007520 ORTHO05D009417 7.0e-40 168.3 152 55.9
Atru.BG.295.p Acer truncatum HOM05D007520 ORTHO05D009417 2.2e-38 163.3 130 63.8
Gohir.D12G157000 Gossypium hirsutum HOM05D007520 ORTHO05D009417 2.3e-35 153.3 233 40.3
Gohir.A12G153900 Gossypium hirsutum HOM05D007520 ORTHO05D009417 4.4e-34 149.1 231 39.4
GSVIVG01011595001 Vitis vinifera HOM05D007520 ORTHO05D009417 2.8e-33 146.4 111 62.2
CSS0021820 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.8e-32 143.7 122 60.7
CSS0032687 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.8e-32 143.7 122 60.7
FAN22G1570 Fragaria x ananassa HOM05D000296 ORTHO05D000175 1.8e-32 143.7 171 47.4
Dinv08902 Davidia involucrata HOM05D007520 ORTHO05D009417 3.1e-32 142.9 135 60.0
AUR62036879 Chenopodium quinoa HOM05D007520 ORTHO05D009417 4.5e-31 139.0 163 46.6
Rhsim09G0085600 Rhododendron simsii HOM05D007520 ORTHO05D009417 1.0e-30 137.9 157 49.7
SalBow4G2630 Salvia bowleyana HOM05D007520 ORTHO05D009417 5.5e-29 132.1 125 51.2
DCAR_002655 Daucus carota HOM05D007520 ORTHO05D009417 7.2e-29 131.7 126 56.3
SalBow3G0394 Salvia bowleyana HOM05D007520 ORTHO05D009417 2.1e-28 130.2 115 53.9
Hma1.2p1_0095F.1_g047530 Hydrangea macrophylla HOM05D007520 ORTHO05D009417 5.2e-27 125.6 227 40.5
GSVIVG01011596001 Vitis vinifera HOM05D007520 ORTHO05D009417 1.2e-26 124.4 108 59.3
HPP92_016407 Vanilla planifolia HOM05D007520 ORTHO05D009417 2.0e-26 123.6 116 50.0
ClCG11G001000 Citrullus lanatus HOM05D007520 ORTHO05D009417 9.8e-26 121.3 125 53.6
MSTRG.8107 Avicennia marina HOM05D007520 ORTHO05D009417 3.7e-25 119.4 113 57.5
CSS0024703 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.8e-24 117.1 136 48.5
Lj3A859T72 Lonicera japonica HOM05D007520 ORTHO05D009417 2.7e-23 113.2 131 51.9
Cc11_g05730 Coffea canephora HOM05D007520 ORTHO05D009417 5.9e-23 112.1 105 54.3
CSS0003025 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 6.6e-22 108.6 136 46.3
Mapoly0059s0009 Marchantia polymorpha HOM05D007520 ORTHO05D009417 6.6e-22 108.6 226 31.0
PGSC0003DMG400013121 Solanum tuberosum HOM05D007520 ORTHO05D009417 7.3e-21 105.1 111 52.3
SalBow6G7185 Salvia bowleyana HOM05D007520 ORTHO05D009417 3.6e-20 102.8 101 48.5
Dinv08901 Davidia involucrata HOM05D007520 ORTHO05D009417 4.4e-18 95.9 73 63.0
HPP92_016406 Vanilla planifolia HOM05D007520 ORTHO05D009417 1.3e-17 94.4 124 45.2
CDE06G1244 Ceratophyllum demersum HOM05D007520 ORTHO05D009417 1.7e-17 94.0 100 46.0
Haze_10814 Corylus avellana HOM05D007520 ORTHO05D009417 4.9e-17 92.4 74 60.8
SalBow2G3493 Salvia bowleyana HOM05D007520 ORTHO05D009417 1.4e-16 90.9 89 49.4
Pp3c10_19450 Physcomitrium patens HOM05D007520 ORTHO05D009417 2.7e-15 86.7 183 31.1
Eucgr.B02652 Eucalyptus grandis HOM05D007520 ORTHO05D009417 5.9e-15 85.5 71 63.4
CSS0008274 Camellia sinensis var. sinensis HOM05D007520 ORTHO05D009417 1.2e-12 77.8 86 48.8
AUR62032185 Chenopodium quinoa HOM05D007520 ORTHO05D009417 3.1e-11 73.2 90 41.1
AUR62026615 Chenopodium quinoa HOM05D007520 ORTHO05D009417 5.8e-10 68.9 100 34.0
AUR62033544 Chenopodium quinoa HOM05D000122 ORTHO05D009417 3.9e-06 56.2 78 34.6


User provided reference genes

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