Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G10750 Arabidopsis lyrata HOM05D006041 ORTHO05D007473 2.2e-247 858.6 464 100.0
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 2.5e-230 802.0 464 94.0
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 4.3e-227 791.2 474 93.0
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 2.1e-205 719.2 477 84.9
Sp2g13100 Schrenkiella parvula HOM05D006041 ORTHO05D007473 2.3e-204 715.7 479 85.6
CARHR144220 Cardamine hirsuta HOM05D006041 ORTHO05D007473 3.2e-198 695.3 475 83.2
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 5.2e-196 688.0 477 83.2
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 5.2e-196 688.0 479 82.7
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 1.2e-195 686.8 479 82.5
BcaC06g31287 Brassica carinata HOM05D006041 ORTHO05D007473 3.4e-195 685.3 475 82.3
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 5.7e-195 684.5 473 82.2
BraA06t27296Z Brassica rapa HOM05D006041 ORTHO05D007473 6.5e-191 671.0 474 81.6
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 6.8e-188 661.0 474 81.4
THA.LOC104805081 Tarenaya hassleriana HOM05D006041 ORTHO05D007473 3.2e-169 599.0 484 69.2
COL.COLO4_16567 Corchorus olitorius HOM05D006041 ORTHO05D007473 1.7e-151 540.0 479 63.3
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 2.5e-150 536.2 483 61.7
Manes.15G133200 Manihot esculenta HOM05D006041 ORTHO05D007473 4.3e-150 535.4 476 62.0
Cfa015002 Carpinus fangiana HOM05D006041 ORTHO05D007473 1.8e-148 530.0 474 60.3
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 1.8e-148 530.0 477 60.6
Dinv26256 Davidia involucrata HOM05D006041 ORTHO05D007473 4.0e-148 528.9 473 60.7
Thecc.02G290600 Theobroma cacao HOM05D006041 ORTHO05D007473 7.6e-147 524.6 482 64.3
Gorai.005G158800 Gossypium raimondii HOM05D006041 ORTHO05D007473 3.8e-146 522.3 481 62.2
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 9.3e-145 517.7 480 60.8
Eucgr.G02114 Eucalyptus grandis HOM05D006041 ORTHO05D007473 2.1e-144 516.5 485 61.9
Haze_10913 Corylus avellana HOM05D006041 ORTHO05D007473 3.5e-144 515.8 503 57.5
Ciclev10015068m.g Citrus clementina HOM05D006041 ORTHO05D007473 1.0e-143 514.2 490 59.4
Sabra08G0102300 Salix brachista HOM05D006041 ORTHO05D007473 2.3e-143 513.1 492 58.7
Duzib268G1057 Durio zibethinus HOM05D006041 ORTHO05D007473 3.9e-143 512.3 481 62.4
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 5.6e-142 508.4 477 58.5
Duzib251G0740 Durio zibethinus HOM05D006041 ORTHO05D007473 7.3e-142 508.1 481 61.7
TWI74G1002 Tripterygium wilfordii HOM05D006041 ORTHO05D007473 1.6e-141 506.9 478 58.6
Lalb_Chr05g0222281 Lupinus albus HOM05D006041 ORTHO05D007473 2.1e-141 506.5 479 59.9
AUR62003915 Chenopodium quinoa HOM05D006041 ORTHO05D007473 1.1e-140 504.2 497 58.4
Gohir.A01G147900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 2.4e-140 503.1 469 59.9
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 4.0e-140 502.3 465 59.8
CsaV3_5G028000 Cucumis sativus L. HOM05D006041 ORTHO05D007473 9.0e-140 501.1 467 57.6
Nn4g24305 Nelumbo nucifera HOM05D006041 ORTHO05D007473 2.0e-139 500.0 470 58.1
Medtr8g104930 Medicago truncatula HOM05D006041 ORTHO05D007473 3.4e-139 499.2 480 61.5
Rhsim09G0037900 Rhododendron simsii HOM05D006041 ORTHO05D007473 3.4e-139 499.2 495 57.8
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 1.3e-138 497.3 465 60.0
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 2.2e-138 496.5 476 59.2
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 2.2e-138 496.5 465 60.6
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 4.9e-138 495.4 465 60.0
Glyma.08G042900 Glycine max HOM05D006041 ORTHO05D007473 7.1e-137 491.5 479 56.8
RcHm_v2.0_Chr4g0443331 Rosa chinensis HOM05D006041 ORTHO05D007473 7.1e-137 491.5 489 55.8
VMungo0251G2799 Vigna mungo HOM05D006041 ORTHO05D007473 1.6e-136 490.3 488 58.2
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 2.7e-136 489.6 485 54.8
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 2.7e-136 489.6 485 54.8
Oeu016281.1 Olea europaea HOM05D006041 ORTHO05D007473 6.0e-136 488.4 473 55.8
TAR629G0174 Trochodendron aralioides HOM05D006041 ORTHO05D007473 6.0e-136 488.4 480 56.5
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 7.9e-136 488.0 469 59.5
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 7.9e-136 488.0 465 58.5
MD13G1029800 Malus domestica HOM05D006041 ORTHO05D007473 1.7e-135 486.9 486 57.6
MD16G1020600 Malus domestica HOM05D006041 ORTHO05D007473 1.7e-135 486.9 484 58.1
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 3.0e-135 486.1 466 56.4
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 3.9e-135 485.7 515 54.8
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 6.6e-135 485.0 482 58.9
vmacro00556 Vaccinium macrocarpon HOM05D006041 ORTHO05D007473 6.6e-135 485.0 476 56.9
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 1.1e-134 484.2 482 58.1
Gohir.D01G141100 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.9e-134 483.4 469 58.8
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 1.9e-134 483.4 475 54.9
Lj4g0006027 Lotus japonicus HOM05D006041 ORTHO05D007473 2.5e-134 483.0 482 55.4
Atru.chr11.510 Acer truncatum HOM05D006041 ORTHO05D007473 5.6e-134 481.9 484 58.7
Sc03g0001760 Simmondsia chinensis HOM05D006041 ORTHO05D007473 9.6e-134 481.1 502 59.0
Lj6A740T67 Lonicera japonica HOM05D006041 ORTHO05D007473 1.6e-133 480.3 474 55.9
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 3.1e-132 476.1 504 54.8
HanXRQChr08g0212441 Helianthus annuus HOM05D006041 ORTHO05D007473 6.9e-132 474.9 482 56.6
Prupe.1G331600 Prunus persica HOM05D006041 ORTHO05D007473 6.9e-132 474.9 483 58.6
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 6.9e-132 474.9 470 54.5
FvH4_4g33820 Fragaria vesca HOM05D006041 ORTHO05D007473 9.0e-132 474.6 472 56.8
Psat7g009240 Pisum sativum HOM05D006041 ORTHO05D007473 1.2e-131 474.2 478 58.8
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 2.6e-131 473.0 481 57.2
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 7.6e-131 471.5 471 57.7
Ca_17289_v3 Cicer arietinum L. HOM05D006041 ORTHO05D007473 9.9e-131 471.1 480 55.0
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 9.9e-131 471.1 456 57.5
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 2.2e-130 469.9 471 55.2
Manes.17G082400 Manihot esculenta HOM05D006041 ORTHO05D007473 4.2e-129 465.7 469 58.0
FAN12G3784 Fragaria x ananassa HOM05D006041 ORTHO05D007473 2.1e-128 463.4 481 54.7
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 2.7e-128 463.0 474 57.0
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 2.3e-127 459.9 483 55.7
arahy.Tifrunner.gnm1.ann1.IVEQ23 Arachis hypogaea HOM05D006041 ORTHO05D007473 3.0e-127 459.5 473 54.5
TAR371G0590 Trochodendron aralioides HOM05D006041 ORTHO05D007473 5.1e-127 458.8 479 55.1
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 1.9e-126 456.8 494 57.1
ClCG01G006460 Citrullus lanatus HOM05D006041 ORTHO05D007473 1.9e-126 456.8 470 54.0
TPR.G32714 Trifolium pratense HOM05D006041 ORTHO05D007473 1.9e-126 456.8 477 56.2
FAN17G0347 Fragaria x ananassa HOM05D006041 ORTHO05D007473 2.1e-125 453.4 481 54.7
FAN22G1094 Fragaria x ananassa HOM05D006041 ORTHO05D007473 3.7e-125 452.6 493 52.9
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 1.0e-122 444.5 479 53.0
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 1.6e-120 437.2 477 57.2
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 2.7e-120 436.4 473 53.3
CiPaw.05G190300 Carya illinoinensis HOM05D006041 ORTHO05D007473 9.0e-116 421.4 399 60.9
ATR0753G012 Amborella trichopoda HOM05D006041 ORTHO05D007473 1.2e-115 421.0 488 51.6
Sed0015632 Sechium edule HOM05D006041 ORTHO05D007473 7.6e-115 418.3 369 58.0
Potri.008G133700 Populus trichocarpa HOM05D006041 ORTHO05D007473 1.7e-114 417.2 417 57.6
PSO478G4621 Papaver somniferum HOM05D006041 ORTHO05D007473 3.2e-113 412.9 475 49.3
CDE07G0862 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 1.2e-112 411.0 472 50.8
PSO017G0247 Papaver somniferum HOM05D006041 ORTHO05D007473 1.2e-112 411.0 475 49.1
AUR62038228 Chenopodium quinoa HOM05D006041 ORTHO05D007473 4.6e-112 409.1 477 51.4
Gohir.D02G141500 Gossypium hirsutum HOM05D006041 ORTHO05D007473 3.7e-109 399.4 407 58.2
Dinv18641 Davidia involucrata HOM05D006041 ORTHO05D007473 1.1e-108 397.9 425 53.4
QL03p034952 Quercus lobata HOM05D006041 ORTHO05D007473 3.4e-107 392.9 432 54.2
Gohir.A03G117900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 5.9e-107 392.1 407 58.0
Aqoxy3G00037 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 5.7e-94 349.0 500 47.8
Sed0013468 Sechium edule HOM05D006041 ORTHO05D007473 1.4e-92 344.4 320 55.0
SGA_v2.0_scaffold151G36726 Striga asiatica HOM05D006041 ORTHO05D007473 1.1e-84 318.2 461 43.2
Zm00001eb099250 Zea mays HOM05D006041 ORTHO05D007473 6.1e-80 302.4 475 42.9
Aa31LG3G2990 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.8e-79 300.8 228 74.6
Zm00001eb312180 Zea mays HOM05D006041 ORTHO05D007473 5.0e-74 282.7 474 38.8
SEGI_21307 Sequoiadendron giganteum HOM05D006041 ORTHO05D007473 8.5e-74 282.0 401 42.1
GSVIVG01011678001 Vitis vinifera HOM05D006041 ORTHO05D007473 1.5e-73 281.2 193 74.1
Hma1.2p1_0089F.1_g045430 Hydrangea macrophylla HOM05D006041 ORTHO05D007473 1.0e-71 275.0 310 51.6
CDE06G1197 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 1.4e-68 264.6 468 39.7
Oeu063578.1 Olea europaea HOM05D006041 ORTHO05D007473 3.8e-66 256.5 320 49.7
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 3.3e-57 226.9 347 38.9
HPP92_009644 Vanilla planifolia HOM05D006041 ORTHO05D007473 3.3e-57 226.9 238 52.1
SGA_v2.0_scaffold151G36757 Striga asiatica HOM05D006041 ORTHO05D007473 5.6e-57 226.1 221 56.6
Actinidia34032 Actinidia chinensis HOM05D006041 ORTHO05D007473 5.2e-55 219.5 309 43.7
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 2.2e-53 214.2 224 50.0
Aa31sc215G20 Aethionema arabicum HOM05D006041 ORTHO05D007473 3.5e-51 206.8 151 76.2
Mapoly0081s0058 Marchantia polymorpha HOM05D006041 ORTHO05D007473 2.3e-50 204.1 325 36.9
Lalb_Chr16g0387681 Lupinus albus HOM05D006041 ORTHO05D007473 1.1e-39 168.7 322 39.1
SGA_v2.0_scaffold151G36758 Striga asiatica HOM05D006041 ORTHO05D007473 6.4e-37 159.5 238 39.9
arahy.Tifrunner.gnm1.ann1.I8TFGP Arachis hypogaea HOM05D006041 ORTHO05D007473 7.3e-33 146.0 294 34.7
Psat7g181280 Pisum sativum HOM05D006041 ORTHO05D007473 1.2e-27 128.6 137 49.6
CAN.G3.6 Capsicum annuum HOM05D006041 ORTHO05D007473 1.5e-25 121.7 185 43.8
QL10p059701 Quercus lobata HOM05D006041 ORTHO05D007473 7.3e-25 119.4 181 49.7
SMO276G0024 Selaginella moellendorffii HOM05D006041 ORTHO05D007473 2.4e-20 104.4 94 54.3
Actinidia25876 Actinidia chinensis HOM05D001822 ORTHO05D001744 2.1e-19 101.3 109 48.6
Actinidia34031 Actinidia chinensis HOM05D006041 ORTHO05D007473 5.6e-17 93.2 74 63.5
MCO04G546 Micromonas commoda HOM05D006041 ORTHO05D007473 3.1e-15 87.4 240 29.6
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 1.8e-07 61.6 120 31.7
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 5.3e-07 60.1 126 32.5
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 9.0e-07 59.3 210 28.6
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 1.2e-06 58.9 120 31.7
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 1.5e-06 58.5 117 33.3
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.5e-06 58.5 118 33.1
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 1.5e-06 58.5 118 33.1
TWI53G0635 Tripterygium wilfordii HOM05D002747 ORTHO05D003069 1.5e-06 58.5 83 36.1
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 2.6e-06 57.8 120 30.8
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 3.4e-06 57.4 119 31.9
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 3.4e-06 57.4 120 33.3
Peaxi162Scf00753g00333 Petunia axillaris HOM05D002747 ORTHO05D003069 3.4e-06 57.4 84 36.9
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 3.4e-06 57.4 138 30.4
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 4.5e-06 57.0 126 31.0
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 4.5e-06 57.0 120 30.0
unitig_22.g6824 Utricularia gibba HOM05D002747 ORTHO05D003069 4.5e-06 57.0 71 38.0
Duzib133G0088 Durio zibethinus HOM05D002747 ORTHO05D003069 5.8e-06 56.6 53 47.2
ECA248G3569 Erigeron canadensis HOM05D002747 ORTHO05D003069 5.8e-06 56.6 85 35.3
Os02g0504500 Oryza sativa ssp. japonica HOM05D002747 ORTHO05D003069 5.8e-06 56.6 83 34.9
CANSAT01G0798 Cannabis sativa HOM05D002747 ORTHO05D003069 1.0e-05 55.8 55 49.1
CANSAT01G2415 Cannabis sativa HOM05D002747 ORTHO05D003069 1.0e-05 55.8 55 49.1
CANSAT78G0345 Cannabis sativa HOM05D002747 ORTHO05D003069 1.0e-05 55.8 64 42.2
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 1.0e-05 55.8 119 31.9
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 1.0e-05 55.8 129 29.5
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 1.0e-05 55.8 118 30.5


User provided reference genes

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