Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 1.2e-166 589.7 285 100.0
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 4.8e-160 567.8 285 96.1
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 3.4e-158 561.6 285 95.8
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 4.2e-156 554.7 285 93.7
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 1.3e-154 549.7 282 92.6
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 1.5e-153 546.2 282 92.2
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 8.5e-149 530.4 281 91.1
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 8.5e-149 530.4 281 91.1
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 1.1e-148 530.0 289 87.9
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 1.1e-148 530.0 281 90.4
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 3.2e-148 528.5 281 90.0
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 3.2e-148 528.5 281 90.0
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 5.5e-148 527.7 281 90.0
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 4.8e-136 488.0 282 81.9
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 8.5e-133 477.2 282 76.6
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 3.2e-132 475.3 282 77.0
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 4.2e-132 474.9 282 77.0
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.8e-130 469.5 282 75.5
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 2.3e-130 469.2 282 77.7
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 2.0e-129 466.1 282 75.2
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.0e-129 466.1 282 75.2
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 3.3e-129 465.3 281 75.1
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 4.4e-129 464.9 282 74.8
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 1.3e-128 463.4 282 74.8
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 6.3e-128 461.1 262 84.0
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 8.2e-128 460.7 278 75.2
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 8.2e-128 460.7 281 73.7
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 1.4e-127 459.9 282 74.5
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 1.8e-127 459.5 262 83.2
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 2.4e-127 459.1 281 74.0
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 3.1e-127 458.8 278 74.8
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 4.1e-127 458.4 281 75.4
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 5.3e-127 458.0 281 74.0
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 1.2e-126 456.8 282 73.0
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 2.7e-126 455.7 281 74.0
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 2.7e-126 455.7 281 73.3
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 5.9e-126 454.5 281 73.7
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 5.9e-126 454.5 281 75.1
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 5.9e-126 454.5 281 74.4
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 5.9e-126 454.5 281 75.4
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 7.7e-126 454.1 282 73.4
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 1.0e-125 453.8 282 74.1
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 1.0e-125 453.8 281 74.7
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 1.0e-125 453.8 282 72.3
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 1.0e-125 453.8 282 73.4
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 1.3e-125 453.4 278 74.1
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 1.7e-125 453.0 282 72.3
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 1.7e-125 453.0 281 74.7
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 2.2e-125 452.6 282 74.1
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 6.5e-125 451.1 278 74.1
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 1.1e-124 450.3 282 71.6
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 1.1e-124 450.3 276 75.4
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 1.5e-124 449.9 281 74.0
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 1.9e-124 449.5 281 73.3
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 1.9e-124 449.5 282 74.8
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 3.2e-124 448.7 281 73.3
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 4.2e-124 448.4 278 72.7
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 5.5e-124 448.0 282 72.0
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 9.4e-124 447.2 282 72.7
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 1.6e-123 446.4 281 73.0
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 2.7e-123 445.7 281 73.3
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 3.6e-123 445.3 281 73.3
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 4.7e-123 444.9 282 73.4
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 4.7e-123 444.9 279 72.4
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 6.1e-123 444.5 279 72.4
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 8.0e-123 444.1 279 72.0
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 1.4e-122 443.4 276 72.8
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 3.0e-122 442.2 281 73.0
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 3.0e-122 442.2 281 71.9
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 5.2e-122 441.4 286 72.0
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 8.8e-122 440.7 281 73.0
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 8.8e-122 440.7 281 72.2
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 3.4e-121 438.7 286 72.0
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 5.7e-121 438.0 282 71.3
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 5.7e-121 438.0 282 73.4
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 7.5e-121 437.6 281 70.8
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 9.8e-121 437.2 281 72.2
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 1.7e-120 436.4 281 73.0
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 6.3e-120 434.5 282 70.2
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 3.1e-119 432.2 271 74.9
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 4.5e-118 428.3 270 73.0
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 5.9e-118 427.9 274 72.6
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 5.9e-118 427.9 282 71.3
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 3.8e-117 425.2 312 65.7
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 5.0e-117 424.9 277 71.8
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 1.5e-116 423.3 313 65.5
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 7.2e-116 421.0 248 81.9
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 1.6e-115 419.9 269 72.5
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 3.6e-115 418.7 281 69.8
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 6.8e-114 414.5 248 75.4
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 1.5e-113 413.3 280 67.9
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 9.8e-113 410.6 270 70.0
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 1.3e-112 410.2 282 68.8
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 1.7e-112 409.8 251 76.5
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 3.7e-112 408.7 281 67.6
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 3.7e-112 408.7 281 67.6
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 2.7e-110 402.5 263 72.2
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 2.9e-109 399.1 296 62.8
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 5.0e-109 398.3 240 76.2
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 1.5e-108 396.7 277 65.7
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 3.6e-107 392.1 277 64.6
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 3.2e-103 379.0 236 73.3
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 4.1e-103 378.6 262 65.6
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 6.6e-101 371.3 264 65.5
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 1.2e-94 350.5 280 59.3
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 1.9e-92 343.2 286 57.3
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 2.1e-91 339.7 424 44.8
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 2.9e-88 329.3 190 77.4
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 6.4e-88 328.2 281 56.9
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 3.9e-85 318.9 419 43.2
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 7.3e-84 314.7 267 58.4
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 1.1e-82 310.8 265 57.7
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 1.2e-75 287.3 249 62.2
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 1.4e-74 283.9 280 48.2
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 2.0e-73 280.0 167 71.9
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 1.3e-72 277.3 167 71.3
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 1.9e-71 273.5 181 65.7
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 1.9e-71 273.5 176 67.6
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 4.2e-71 272.3 306 46.7
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 2.3e-69 266.5 248 60.1
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 3.3e-68 262.7 144 79.2
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 6.9e-66 255.0 295 45.4
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 4.3e-60 235.7 169 64.5
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 8.1e-59 231.5 295 42.0
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 5.8e-57 225.3 135 76.3
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 2.1e-51 206.8 144 61.1
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 2.1e-51 206.8 143 68.5
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 3.4e-41 172.9 224 39.3
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 5.9e-41 172.2 98 76.5
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 1.4e-39 167.5 110 71.8
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 3.3e-28 129.8 71 76.1
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 4.4e-28 129.4 77 72.7
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 7.7e-25 118.6 72 66.7
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 7.7e-25 118.6 72 66.7
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 3.8e-24 116.3 75 73.3
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 5.0e-24 115.9 76 72.4
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 1.4e-23 114.4 92 60.9
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 1.9e-23 114.0 80 66.2
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 6.1e-22 109.0 80 62.5
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 1.8e-13 80.9 87 50.6
GSVIVG01029848001 Vitis vinifera HOM05D000172 ORTHO05D000273 1.8e-13 80.9 57 68.4
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 5.7e-12 75.9 52 65.4
FAN21G0384 Fragaria x ananassa HOM05D005341 ORTHO05D006712 4.5e-09 66.2 85 48.2
CBR_g37149 Chara braunii HOM05D005341 ORTHO05D017343 2.2e-08 63.9 169 29.0
unitig_699.g19475 Utricularia gibba HOM05D005341 ORTHO05D416497 1.6e-06 57.8 65 49.2


User provided reference genes

Program Settings