Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL5G10050 Arabidopsis lyrata HOM05D007140 ORTHO05D008539 3.7e-39 166.0 251 100.0
AT2G01100 Arabidopsis thaliana HOM05D007140 ORTHO05D008539 5.9e-21 105.5 221 74.7
CARHR143650 Cardamine hirsuta HOM05D007140 ORTHO05D008539 8.3e-15 85.1 149 79.2
Carub.0005s0008 Capsella rubella HOM05D007140 ORTHO05D008539 5.9e-13 79.0 149 75.2
Sp2g12570 Schrenkiella parvula HOM05D007140 ORTHO05D008539 3.0e-12 76.6 76 57.9
Thhalv10001024m.g Eutrema salsugineum HOM05D007140 ORTHO05D008539 2.5e-11 73.6 75 77.3
PSO017G0369 Papaver somniferum HOM05D007140 ORTHO05D008539 2.1e-10 70.5 40 85.0
PSO478G3468 Papaver somniferum HOM05D007140 ORTHO05D008539 6.2e-10 68.9 40 82.5
SHI16291 Sapria himalayana HOM05D007140 ORTHO05D008539 6.2e-10 68.9 40 82.5
Duzib251G0133 Durio zibethinus HOM05D007140 ORTHO05D008539 1.0e-09 68.2 40 85.0
Zm00001eb334820 Zea mays HOM05D007140 ORTHO05D008539 2.3e-09 67.0 40 80.0
THA.LOC104824159 Tarenaya hassleriana HOM05D007140 ORTHO05D008539 3.1e-09 66.6 38 84.2
BcaC03g16993 Brassica carinata HOM05D007140 ORTHO05D008539 4.0e-09 66.2 37 86.5
C02p49020 Brassica napus HOM05D007140 ORTHO05D008539 4.0e-09 66.2 37 86.5
BolC2t10986H Brassica oleracea HOM05D007140 ORTHO05D008539 4.0e-09 66.2 37 86.5
BolC2t10996H Brassica oleracea HOM05D007140 ORTHO05D008539 4.0e-09 66.2 37 86.5
Gohir.A05G317300 Gossypium hirsutum HOM05D007140 ORTHO05D008539 5.2e-09 65.9 38 84.2
unitig_26.g10011 Utricularia gibba HOM05D007140 ORTHO05D008539 6.8e-09 65.5 40 80.0
Actinidia31986 Actinidia chinensis HOM05D007140 ORTHO05D008539 8.9e-09 65.1 35 91.4
CDE06G2249 Ceratophyllum demersum HOM05D007140 ORTHO05D008539 8.9e-09 65.1 35 91.4
CDE07G0564 Ceratophyllum demersum HOM05D007140 ORTHO05D008539 8.9e-09 65.1 35 91.4
Rhsim09G0068700 Rhododendron simsii HOM05D067272 ORTHO05D008539 8.9e-09 65.1 35 91.4
C02p49060 Brassica napus HOM05D007140 ORTHO05D008539 1.2e-08 64.7 37 83.8
BraA02t08174Z Brassica rapa HOM05D007140 ORTHO05D008539 1.2e-08 64.7 37 83.8
Cc11_g09160 Coffea canephora HOM05D007140 ORTHO05D008539 1.2e-08 64.7 40 77.5
Dinv04892 Davidia involucrata HOM05D007140 ORTHO05D008539 1.2e-08 64.7 35 91.4
Psat6g222160 Pisum sativum HOM05D007140 ORTHO05D008539 1.2e-08 64.7 40 77.5
A02p31680 Brassica napus HOM05D007140 ORTHO05D008539 1.5e-08 64.3 133 73.7
Hma1.2p1_0114F.1_g055420 Hydrangea macrophylla HOM05D007140 ORTHO05D008539 1.5e-08 64.3 40 82.5
Sabra08G0095700 Salix brachista HOM05D007140 ORTHO05D008539 1.5e-08 64.3 38 81.6
Lj3P876T20 Lonicera japonica HOM05D007140 ORTHO05D008539 2.0e-08 63.9 35 88.6
Eucgr.B02880 Eucalyptus grandis HOM05D007140 ORTHO05D008539 2.6e-08 63.5 35 88.6
Gohir.D05G319100 Gossypium hirsutum HOM05D007140 ORTHO05D008539 2.6e-08 63.5 35 88.6
Gorai.009G342100 Gossypium raimondii HOM05D007140 ORTHO05D008539 2.6e-08 63.5 35 88.6
Manes.14G110300 Manihot esculenta HOM05D007140 ORTHO05D008539 2.6e-08 63.5 35 88.6
TWI79G1374 Tripterygium wilfordii HOM05D007140 ORTHO05D008539 2.6e-08 63.5 35 88.6
DCAR_030189 Daucus carota HOM05D007140 ORTHO05D008539 3.4e-08 63.2 34 88.2
Zm00001eb126340 Zea mays HOM05D007140 ORTHO05D008539 3.4e-08 63.2 40 77.5
TAR622G0373 Trochodendron aralioides HOM05D007140 ORTHO05D008539 4.4e-08 62.8 40 77.5
BcaC06g31334 Brassica carinata HOM05D007140 ORTHO05D008539 5.8e-08 62.4 37 83.8
C07p31520 Brassica napus HOM05D007140 ORTHO05D008539 5.8e-08 62.4 37 83.8
Ciclev10015782m.g Citrus clementina HOM05D007140 ORTHO05D008539 5.8e-08 62.4 35 85.7
PGR119G2007 Punica granatum HOM05D007140 ORTHO05D008539 5.8e-08 62.4 35 85.7
Atru.chr11.355 Acer truncatum HOM05D007140 ORTHO05D008539 7.5e-08 62.0 37 78.4
CANSAT01G0870 Cannabis sativa HOM05D007140 ORTHO05D008539 7.5e-08 62.0 40 77.5
A06p44680 Brassica napus HOM05D007140 ORTHO05D008539 9.8e-08 61.6 128 64.1
BraA06t27341Z Brassica rapa HOM05D007140 ORTHO05D008539 9.8e-08 61.6 128 64.1
Potri.008G126800 Populus trichocarpa HOM05D007140 ORTHO05D008539 9.8e-08 61.6 37 78.4
Cpa.g.sc65.99 Carica papaya HOM05D007140 ORTHO05D008539 1.3e-07 61.2 35 82.9
Lalb_Chr06g0165691 Lupinus albus HOM05D007140 ORTHO05D008539 1.3e-07 61.2 40 77.5
Sc04g0005790 Simmondsia chinensis HOM05D007140 ORTHO05D008539 1.3e-07 61.2 35 85.7
VMungo0720G0754 Vigna mungo HOM05D007140 ORTHO05D008539 1.3e-07 61.2 38 76.3
Actinidia15238 Actinidia chinensis HOM05D007140 ORTHO05D008539 1.7e-07 60.8 35 85.7
Sed0020048 Sechium edule HOM05D007140 ORTHO05D008539 1.7e-07 60.8 35 88.6
Glyma.20G123800 Glycine max HOM05D007140 ORTHO05D008539 2.2e-07 60.5 38 73.7
Nn4g24045 Nelumbo nucifera HOM05D007140 ORTHO05D008539 2.2e-07 60.5 37 81.1
TPR.G4844 Trifolium pratense HOM05D007140 ORTHO05D008539 2.2e-07 60.5 39 71.8
SEGI_30462 Sequoiadendron giganteum HOM05D007140 ORTHO05D008539 2.9e-07 60.1 39 74.4
CiPaw.06G014500 Carya illinoinensis HOM05D007140 ORTHO05D008539 3.7e-07 59.7 37 78.4
MELO3C012294.2 Cucumis melo HOM05D007140 ORTHO05D008539 3.7e-07 59.7 35 85.7
CsaV3_5G034830 Cucumis sativus L. HOM05D007140 ORTHO05D008539 3.7e-07 59.7 35 85.7
FvH4_4g26261 Fragaria vesca HOM05D007140 ORTHO05D008539 3.7e-07 59.7 35 85.7
FAN07G2347 Fragaria x ananassa HOM05D007140 ORTHO05D008539 3.7e-07 59.7 35 85.7
FAN17G0786 Fragaria x ananassa HOM05D007140 ORTHO05D008539 3.7e-07 59.7 35 85.7
FAN22G0565 Fragaria x ananassa HOM05D007140 ORTHO05D008539 3.7e-07 59.7 35 85.7
Phvul.007G035100 Phaseolus vulgaris HOM05D007140 ORTHO05D008539 3.7e-07 59.7 38 73.7
TAR629G2134 Trochodendron aralioides HOM05D007140 ORTHO05D008539 3.7e-07 59.7 39 74.4
Aa31LG3G9770 Aethionema arabicum HOM05D000057 ORTHO05D001897 4.9e-07 59.3 37 75.7
Ca_23696_v3 Cicer arietinum L. HOM05D007140 ORTHO05D008539 4.9e-07 59.3 40 67.5
ECA233G4197 Erigeron canadensis HOM05D007140 ORTHO05D008539 4.9e-07 59.3 37 78.4
SalBow8G0138 Salvia bowleyana HOM05D007140 ORTHO05D008539 4.9e-07 59.3 35 82.9
PGSC0003DMG400030513 Solanum tuberosum HOM05D007140 ORTHO05D008539 4.9e-07 59.3 40 72.5
HPP92_004883 Vanilla planifolia HOM05D007140 ORTHO05D008539 4.9e-07 59.3 35 82.9
Cfa015795 Carpinus fangiana HOM05D007140 ORTHO05D008539 6.4e-07 58.9 35 82.9
CiPaw.05G246200 Carya illinoinensis HOM05D007140 ORTHO05D008539 6.4e-07 58.9 35 82.9
Haze_00698 Corylus avellana HOM05D007140 ORTHO05D008539 6.4e-07 58.9 35 82.9
Glyma.10G266900 Glycine max HOM05D007140 ORTHO05D008539 6.4e-07 58.9 38 71.1
Os01g0120700 Oryza sativa ssp. japonica HOM05D007140 ORTHO05D008539 6.4e-07 58.9 35 80.0
Peaxi162Scf00205g00914 Petunia axillaris HOM05D007140 ORTHO05D008539 6.4e-07 58.9 40 77.5
MSTRG.877 Avicennia marina HOM05D007140 ORTHO05D008539 8.3e-07 58.5 37 78.4
EL10Ac6g14263 Beta vulgaris HOM05D007140 ORTHO05D008539 8.3e-07 58.5 35 80.0
COL.COLO4_06026 Corchorus olitorius HOM05D007140 ORTHO05D008539 8.3e-07 58.5 35 82.9
FAN12G1559 Fragaria x ananassa HOM05D003680 ORTHO05D004264 8.3e-07 58.5 35 82.9
MBI16_g21172_MAGBIO Magnolia biondii HOM05D007140 ORTHO05D008539 8.3e-07 58.5 35 82.9
QL01p002793 Quercus lobata HOM05D007140 ORTHO05D008539 8.3e-07 58.5 35 82.9
RcHm_v2.0_Chr4g0433871 Rosa chinensis HOM05D007140 ORTHO05D008539 8.3e-07 58.5 35 82.9
Migut.L00827 Erythranthe guttata HOM05D045982 ORTHO05D008539 1.1e-06 58.2 35 82.9
Nitab4.5_0000350g0190 Nicotiana tabacum HOM05D007140 ORTHO05D008539 1.1e-06 58.2 40 75.0
Oeu004318.1 Olea europaea HOM05D007140 ORTHO05D008539 1.1e-06 58.2 35 82.9
Thecc.02G217300 Theobroma cacao HOM05D007140 ORTHO05D008539 1.1e-06 58.2 35 82.9
Actinidia16704 Actinidia chinensis HOM05D007140 ORTHO05D008539 1.4e-06 57.8 33 84.8
Lalb_Chr21g0308581 Lupinus albus HOM05D007140 ORTHO05D008539 1.4e-06 57.8 35 77.1
Oeu044323.1 Olea europaea HOM05D007140 ORTHO05D008539 1.9e-06 57.4 35 80.0
Solyc05g008440.3 Solanum lycopersicum HOM05D007140 ORTHO05D008539 1.9e-06 57.4 40 70.0
Sopen05g004270 Solanum pennellii HOM05D007140 ORTHO05D008539 1.9e-06 57.4 40 70.0
Lj5g0023497 Lotus japonicus HOM05D007140 ORTHO05D008539 3.2e-06 56.6 35 74.3
Ah.02g128120 Amaranthus hybridus HOM05D007140 ORTHO05D008539 4.1e-06 56.2 35 77.1
MD13G1031200 Malus domestica HOM05D007140 ORTHO05D008539 4.1e-06 56.2 35 77.1
Prupe.1G320900 Prunus persica HOM05D007140 ORTHO05D008539 4.1e-06 56.2 35 77.1
ATR0691G199 Amborella trichopoda HOM05D007140 ORTHO05D008539 7.0e-06 55.5 35 74.3
Medtr1g108700 Medicago truncatula HOM05D007140 ORTHO05D008539 7.0e-06 55.5 35 71.4
SGA_v2.0_scaffold50G18534 Striga asiatica HOM05D007140 ORTHO05D008539 9.2e-06 55.1 35 80.0


User provided reference genes

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