Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL58U10020 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 5.8e-101 370.9 194 100.0
AL8G24420 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 1.3e-100 369.8 194 99.5
AT5G50340 Arabidopsis thaliana HOM05D001329 ORTHO05D004946 9.3e-99 363.6 194 97.9
Carub.0008s1040 Capsella rubella HOM05D001329 ORTHO05D004946 2.7e-98 362.1 194 96.9
Thhalv10013055m.g Eutrema salsugineum HOM05D001329 ORTHO05D004946 1.2e-93 346.7 192 93.2
BcaC01g04813 Brassica carinata HOM05D001329 ORTHO05D004946 7.7e-93 344.0 194 92.3
A03p27790 Brassica napus HOM05D001329 ORTHO05D004946 7.7e-93 344.0 194 92.3
C03p33520 Brassica napus HOM05D001329 ORTHO05D004946 7.7e-93 344.0 194 92.3
BolC3t15673H Brassica oleracea HOM05D001329 ORTHO05D004946 7.7e-93 344.0 194 92.3
BraA03t11990Z Brassica rapa HOM05D001329 ORTHO05D004946 7.7e-93 344.0 194 92.3
Sp6g12440 Schrenkiella parvula HOM05D001329 ORTHO05D004946 5.0e-92 341.3 194 91.8
Aa31LG3G5830 Aethionema arabicum HOM05D001329 ORTHO05D004946 5.9e-85 317.8 191 85.9
THA.LOC104803142 Tarenaya hassleriana HOM05D001329 ORTHO05D004946 6.5e-84 314.3 192 83.3
BcaB01g02899 Brassica carinata HOM05D001329 ORTHO05D004946 1.1e-78 297.0 192 85.4
Ciclev10025165m.g Citrus clementina HOM05D001329 ORTHO05D004946 3.2e-75 285.4 191 74.3
GSVIVG01016954001 Vitis vinifera HOM05D001329 ORTHO05D004946 7.2e-75 284.3 191 72.8
Nitab4.5_0005085g0040 Nicotiana tabacum HOM05D001329 ORTHO05D004946 2.1e-74 282.7 192 71.9
Nitab4.5_0004969g0080 Nicotiana tabacum HOM05D001329 ORTHO05D004946 4.7e-74 281.6 192 70.8
TWI18G0587 Tripterygium wilfordii HOM05D001329 ORTHO05D004946 1.0e-73 280.4 191 73.8
PGSC0003DMG400002521 Solanum tuberosum HOM05D001329 ORTHO05D004946 2.3e-73 279.3 192 69.8
Thecc.06G102200 Theobroma cacao HOM05D001329 ORTHO05D004946 2.3e-73 279.3 191 73.3
TAR626G1508 Trochodendron aralioides HOM05D001329 ORTHO05D004946 5.2e-73 278.1 192 71.9
TAR626G1659 Trochodendron aralioides HOM05D001329 ORTHO05D004946 5.2e-73 278.1 192 71.9
Peaxi162Scf00038g01146 Petunia axillaris HOM05D001329 ORTHO05D004946 6.7e-73 277.7 192 69.8
Potri.001G191200 Populus trichocarpa HOM05D001329 ORTHO05D004946 6.7e-73 277.7 194 71.1
CAN.G1143.24 Capsicum annuum HOM05D001329 ORTHO05D004946 3.3e-72 275.4 192 68.8
Solyc03g121120.4 Solanum lycopersicum HOM05D001329 ORTHO05D004946 5.7e-72 274.6 192 68.8
Sopen03g039950 Solanum pennellii HOM05D001329 ORTHO05D004946 5.7e-72 274.6 192 68.8
QL05p019057 Quercus lobata HOM05D001329 ORTHO05D004946 1.3e-71 273.5 192 70.8
PGR102G1644 Punica granatum HOM05D001329 ORTHO05D004946 2.8e-71 272.3 191 70.2
Migut.I00963 Erythranthe guttata HOM05D001329 ORTHO05D004946 4.8e-71 271.6 191 70.2
Manes.11G031600 Manihot esculenta HOM05D001329 ORTHO05D004946 4.8e-71 271.6 191 70.7
Gohir.A10G064700 Gossypium hirsutum HOM05D001329 ORTHO05D004946 8.2e-71 270.8 191 71.2
Lsat_1_v5_gn_4_98041 Lactuca sativa HOM05D001329 ORTHO05D004946 1.1e-70 270.4 191 70.2
Cc04_g02430 Coffea canephora HOM05D001329 ORTHO05D004946 1.8e-70 269.6 191 69.6
Duzib235G0146 Durio zibethinus HOM05D001329 ORTHO05D004946 1.8e-70 269.6 191 70.7
Gohir.D10G066200 Gossypium hirsutum HOM05D001329 ORTHO05D004946 1.8e-70 269.6 191 70.7
Gorai.011G070300 Gossypium raimondii HOM05D001329 ORTHO05D004946 1.8e-70 269.6 191 70.7
Atru.chr1.3485 Acer truncatum HOM05D001329 ORTHO05D004946 7.0e-70 267.7 193 69.4
MBI02_g35318_MAGBIO Magnolia biondii HOM05D001329 ORTHO05D004946 2.0e-69 266.2 192 68.8
Eucgr.J02926 Eucalyptus grandis HOM05D001329 ORTHO05D004946 3.5e-69 265.4 191 68.6
Nn8g39015 Nelumbo nucifera HOM05D001329 ORTHO05D004946 3.5e-69 265.4 194 68.6
CiPaw.01G230000 Carya illinoinensis HOM05D001329 ORTHO05D004946 4.5e-69 265.0 192 69.3
Eucgr.J02692 Eucalyptus grandis HOM05D001329 ORTHO05D004946 1.7e-68 263.1 191 68.1
CANSAT56G4024 Cannabis sativa HOM05D001329 ORTHO05D004946 1.1e-67 260.4 192 68.2
Ca_23279_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 1.9e-67 259.6 191 67.0
Glyma.08G199700 Glycine max HOM05D001329 ORTHO05D004946 7.2e-67 257.7 191 67.0
HanXRQChr05g0139791 Helianthus annuus HOM05D001329 ORTHO05D004946 7.2e-67 257.7 191 66.0
ATR0705G162 Amborella trichopoda HOM05D001329 ORTHO05D004946 9.4e-67 257.3 192 65.6
arahy.Tifrunner.gnm1.ann1.KL0FMA Arachis hypogaea HOM05D001329 ORTHO05D002618 1.2e-66 256.9 191 66.5
Lalb_Chr04g0263001 Lupinus albus HOM05D001329 ORTHO05D004946 1.2e-66 256.9 191 64.4
CANSAT56G2668 Cannabis sativa HOM05D001329 ORTHO05D004946 1.6e-66 256.5 192 67.2
Sc12g0010100 Simmondsia chinensis HOM05D001329 ORTHO05D004946 2.1e-66 256.1 191 67.0
Lj3g0020598 Lotus japonicus HOM05D001329 ORTHO05D004946 2.7e-66 255.8 191 64.9
Psat4g196800 Pisum sativum HOM05D001329 ORTHO05D004946 4.7e-66 255.0 191 66.0
vmacro18841 Vaccinium macrocarpon HOM05D001329 ORTHO05D004946 4.7e-66 255.0 194 68.6
FvH4_6g32620 Fragaria vesca HOM05D001329 ORTHO05D004946 8.0e-66 254.2 193 68.4
Medtr8g014670 Medicago truncatula HOM05D001329 ORTHO05D004946 1.4e-65 253.4 191 64.9
TPR.G15143 Trifolium pratense HOM05D001329 ORTHO05D004946 5.2e-65 251.5 191 65.4
PSO478G0947 Papaver somniferum HOM05D001329 ORTHO05D004946 6.8e-65 251.1 191 66.0
Phvul.010G143800 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 2.6e-64 249.2 191 63.9
RcHm_v2.0_Chr2g0141101 Rosa chinensis HOM05D001329 ORTHO05D004946 2.6e-64 249.2 193 65.3
CSS0049032 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 3.4e-64 248.8 228 58.8
VMungo0331G1514 Vigna mungo HOM05D001329 ORTHO05D004946 3.4e-64 248.8 191 63.9
unitig_88.g27600 Utricularia gibba HOM05D001329 ORTHO05D004946 4.4e-64 248.4 191 66.0
Actinidia32112 Actinidia chinensis HOM05D001329 ORTHO05D004946 5.7e-64 248.1 165 74.5
Aqoxy7G03959 Aquilegia oxysepala HOM05D001329 ORTHO05D004946 1.3e-63 246.9 194 62.9
HPP92_003950 Vanilla planifolia HOM05D001329 ORTHO05D004946 1.3e-63 246.9 191 64.4
Sabra01G0150400 Salix brachista HOM05D001329 ORTHO05D004946 1.7e-63 246.5 194 66.0
Sed0006591 Sechium edule HOM05D001329 ORTHO05D004946 2.8e-63 245.7 193 64.2
MD17G1180500 Malus domestica HOM05D001329 ORTHO05D004946 3.7e-63 245.4 192 65.6
COL.COLO4_30535 Corchorus olitorius HOM05D001329 ORTHO05D004946 1.1e-62 243.8 191 64.4
PSO782G0993 Papaver somniferum HOM05D001329 ORTHO05D004946 1.4e-62 243.4 193 63.7
Glyma.15G021000 Glycine max HOM05D001329 ORTHO05D004946 2.4e-62 242.7 192 63.5
CDE02G0018 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 3.1e-62 242.3 178 68.5
Os06g0151600 Oryza sativa ssp. japonica HOM05D001329 ORTHO05D004946 7.0e-62 241.1 192 63.0
TPR.G6578 Trifolium pratense HOM05D001329 ORTHO05D004946 1.2e-61 240.4 191 63.4
VMungo1080G1498 Vigna mungo HOM05D001329 ORTHO05D004946 1.2e-61 240.4 192 62.0
Ah.01g017270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 1.6e-61 240.0 192 61.5
ClCG07G013420 Citrullus lanatus HOM05D001329 ORTHO05D004946 2.7e-61 239.2 193 63.7
ClCG07G013460 Citrullus lanatus HOM05D001329 ORTHO05D004946 2.7e-61 239.2 193 63.7
Hund07630 Selenicereus undatus HOM05D001329 ORTHO05D004946 4.5e-61 238.4 192 63.5
Lalb_Chr24g0396201 Lupinus albus HOM05D001329 ORTHO05D004946 1.7e-60 236.5 196 63.8
EL10Ac9g21183 Beta vulgaris HOM05D001329 ORTHO05D004946 2.9e-60 235.7 190 60.5
GSVIVG01016953001 Vitis vinifera HOM05D001329 ORTHO05D004946 2.9e-60 235.7 168 70.8
arahy.Tifrunner.gnm1.ann1.B6KHKZ Arachis hypogaea HOM05D001329 ORTHO05D002618 6.5e-60 234.6 167 69.5
Phvul.005G165000 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 1.1e-59 233.8 192 59.9
arahy.Tifrunner.gnm1.ann1.V5Z0HR Arachis hypogaea HOM05D001329 ORTHO05D004946 4.2e-59 231.9 196 61.2
Medtr2g100640 Medicago truncatula HOM05D001329 ORTHO05D004946 4.2e-59 231.9 195 61.5
SEGI_18109 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 9.4e-59 230.7 191 59.7
Lj3g0004043 Lotus japonicus HOM05D001329 ORTHO05D004946 1.6e-58 229.9 195 60.5
CsaV3_3G023430 Cucumis sativus L. HOM05D001329 ORTHO05D004946 3.0e-57 225.7 193 61.1
Rhsim08G0228700 Rhododendron simsii HOM05D001329 ORTHO05D004946 3.0e-57 225.7 242 53.3
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 6.8e-57 224.6 160 66.9
MELO3C013011.2 Cucumis melo HOM05D001329 ORTHO05D004946 1.2e-56 223.8 193 61.1
SalBow2G1072 Salvia bowleyana HOM05D001329 ORTHO05D004946 3.4e-56 222.2 198 60.6
AUR62031953 Chenopodium quinoa HOM05D001329 ORTHO05D004946 1.7e-55 219.9 232 51.3
CANSAT56G3773 Cannabis sativa HOM05D001329 ORTHO05D004946 1.8e-54 216.5 155 70.3
FAN14G3013 Fragaria x ananassa HOM05D001329 ORTHO05D004946 7.7e-53 211.1 196 60.2
Ah.16g103270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 2.0e-48 196.4 192 52.1
FAN05G0851 Fragaria x ananassa HOM05D001329 ORTHO05D004946 9.8e-48 194.1 192 57.8
SGA_v2.0_scaffold45G16999 Striga asiatica HOM05D001329 ORTHO05D004946 3.7e-47 192.2 173 59.0
Prupe.3G056500 Prunus persica HOM05D001329 ORTHO05D004946 1.2e-45 187.2 137 70.1
Mapoly0008s0091 Marchantia polymorpha HOM05D001329 ORTHO05D004946 1.3e-44 183.7 190 51.1
Ca_01173_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 5.6e-43 178.3 195 51.3
SGA_v2.0_scaffold265G46056 Striga asiatica HOM05D001329 ORTHO05D004946 7.3e-43 177.9 200 51.0
arahy.Tifrunner.gnm1.ann1.VU8J7C Arachis hypogaea HOM05D001329 ORTHO05D004946 4.7e-42 175.3 167 55.1
Pp3c1_36770 Physcomitrium patens HOM05D001329 ORTHO05D004946 9.8e-40 167.5 196 48.0
Lj9C514G19 Lonicera japonica HOM05D001329 ORTHO05D004946 1.7e-39 166.8 193 51.8
Dinv30424 Davidia involucrata HOM05D001329 ORTHO05D004946 1.4e-38 163.7 128 68.0
AUR62022239 Chenopodium quinoa HOM05D001329 ORTHO05D004946 2.4e-38 162.9 188 46.8
SMO146G0024 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 3.5e-37 159.1 193 43.5
Psat5g295200 Pisum sativum HOM05D001329 ORTHO05D004946 5.0e-36 155.2 136 62.5
SMO173G0075 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 5.2e-33 145.2 212 39.2
CBR_g52747 Chara braunii HOM05D001329 ORTHO05D004946 2.4e-30 136.3 172 43.6
Psat5g239480 Pisum sativum HOM05D001329 ORTHO05D004946 3.5e-29 132.5 126 60.3
SMO173G0090 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 6.6e-28 128.3 189 38.6
SMO173G0029 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.5e-27 127.1 192 39.6
SMO173G0086 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.9e-27 126.7 191 39.8
DCAR_007591 Daucus carota HOM05D001329 ORTHO05D004946 8.1e-26 121.3 113 60.2
MCO02G474 Micromonas commoda HOM05D001329 ORTHO05D004946 1.8e-25 120.2 201 34.8
SMO146G0193 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 3.1e-25 119.4 195 37.9
Cre07.g317908 Chlamydomonas reinhardtii HOM05D001329 ORTHO05D004946 1.8e-17 93.6 181 34.3
Haze_15873 Corylus avellana HOM05D001329 ORTHO05D004946 1.8e-17 93.6 96 55.2
SHI11148 Sapria himalayana HOM05D000105 ORTHO05D000023 1.8e-17 93.6 135 40.0
PRCOL_00001245 Prasinoderma coloniale HOM05D001329 ORTHO05D004946 9.9e-16 87.8 203 27.6
Cpa.g.c44864 Carica papaya HOM05D001329 ORTHO05D004946 1.3e-15 87.4 54 70.4
Cpa.g.sc2949.1 Carica papaya HOM05D001329 ORTHO05D004946 4.9e-15 85.5 50 82.0
VMungo1080G0220 Vigna mungo HOM05D001329 ORTHO05D004946 4.9e-15 85.5 87 51.7
PGR102G0501 Punica granatum HOM05D001329 ORTHO05D004946 5.4e-14 82.0 65 61.5
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 1.2e-13 80.9 122 40.2
SHI11147 Sapria himalayana HOM05D000105 ORTHO05D000023 2.7e-13 79.7 87 47.1
Zm00001eb270700 Zea mays HOM05D001329 ORTHO05D004946 7.8e-13 78.2 73 53.4
AUR62022260 Chenopodium quinoa HOM05D001329 ORTHO05D004946 3.0e-12 76.3 118 39.8
SMO173G0016 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 6.6e-12 75.1 77 42.9
Haze_15869 Corylus avellana HOM05D001329 ORTHO05D004946 7.3e-11 71.6 80 52.5
Oeu043914.1 Olea europaea HOM05D001329 ORTHO05D004946 2.8e-10 69.7 54 57.4
RcHm_v2.0_Chr2g0141071 Rosa chinensis HOM05D001329 ORTHO05D004946 8.1e-10 68.2 52 59.6
Glyma.08G248800 Glycine max HOM05D001329 ORTHO05D004946 2.6e-08 63.2 48 62.5


User provided reference genes

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