Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G28740 Arabidopsis lyrata HOM05D007635 ORTHO05D009612 2.2e-88 328.9 167 100.0
AL569U10010 Arabidopsis lyrata HOM05D007635 ORTHO05D009612 2.2e-88 328.9 167 100.0
AT2G33180 Arabidopsis thaliana HOM05D007635 ORTHO05D009612 3.5e-78 295.0 167 89.2
Carub.0004s1461 Capsella rubella HOM05D007635 ORTHO05D009612 2.4e-74 282.3 167 86.8
Sp4g15480 Schrenkiella parvula HOM05D007635 ORTHO05D009612 2.2e-72 275.8 167 83.8
Thhalv10017331m.g Eutrema salsugineum HOM05D007635 ORTHO05D009612 1.1e-71 273.5 167 85.0
CARHR127160 Cardamine hirsuta HOM05D007635 ORTHO05D009612 2.7e-70 268.9 167 82.0
BcaB06g28657 Brassica carinata HOM05D007635 ORTHO05D009612 3.9e-69 265.0 167 83.2
BcaC02g07856 Brassica carinata HOM05D007635 ORTHO05D009612 4.8e-67 258.1 167 80.8
BolC4t27744H Brassica oleracea HOM05D007635 ORTHO05D009612 4.8e-67 258.1 167 80.8
BraA04t18051Z Brassica rapa HOM05D007635 ORTHO05D009612 6.2e-67 257.7 167 81.4
C04p62620 Brassica napus HOM05D007635 ORTHO05D009612 8.1e-67 257.3 167 80.8
A04p25480 Brassica napus HOM05D007635 ORTHO05D009612 3.4e-65 251.9 167 79.6
Aa31LG5G4080 Aethionema arabicum HOM05D007635 ORTHO05D009612 1.2e-62 243.4 167 74.3
Gorai.011G162800 Gossypium raimondii HOM05D007635 ORTHO05D009612 1.4e-42 176.8 113 76.1
Duzib268G0659 Durio zibethinus HOM05D007635 ORTHO05D009612 6.9e-42 174.5 110 75.5
Eucgr.K02034 Eucalyptus grandis HOM05D007635 ORTHO05D009612 1.5e-41 173.3 131 67.2
Eucgr.L01778 Eucalyptus grandis HOM05D007635 ORTHO05D009612 1.5e-41 173.3 103 79.6
COL.COLO4_05721 Corchorus olitorius HOM05D001044 ORTHO05D007204 2.0e-41 172.9 119 73.1
Potri.001G053700 Populus trichocarpa HOM05D007635 ORTHO05D009612 2.5e-39 166.0 115 71.3
QL07p037425 Quercus lobata HOM05D007635 ORTHO05D009612 2.5e-39 166.0 116 70.7
PGR142G1826 Punica granatum HOM05D007635 ORTHO05D009612 3.2e-39 165.6 101 78.2
Ciclev10006014m.g Citrus clementina HOM05D007635 ORTHO05D009612 4.2e-39 165.2 167 53.9
GSVIVG01030149001 Vitis vinifera HOM05D007635 ORTHO05D009612 9.3e-39 164.1 114 70.2
TWI09G0209 Tripterygium wilfordii HOM05D007635 ORTHO05D009612 2.1e-38 162.9 172 55.2
Ca_09045_v3 Cicer arietinum L. HOM05D007635 ORTHO05D009612 1.0e-37 160.6 147 57.8
CANSAT64G1146 Cannabis sativa HOM05D007635 ORTHO05D009612 1.8e-37 159.8 109 72.5
Cfa016671 Carpinus fangiana HOM05D003127 ORTHO05D003709 2.3e-37 159.5 129 65.1
Haze_19686 Corylus avellana HOM05D007635 ORTHO05D009612 6.7e-37 157.9 129 65.1
Dinv26633 Davidia involucrata HOM05D007635 ORTHO05D009612 6.7e-37 157.9 113 68.1
Manes.15G049600 Manihot esculenta HOM05D007635 ORTHO05D009612 8.8e-37 157.5 97 77.3
Nitab4.5_0000923g0190 Nicotiana tabacum HOM05D007635 ORTHO05D009612 8.8e-37 157.5 166 54.8
unitig_26.g8994 Utricularia gibba HOM05D007635 ORTHO05D009612 8.8e-37 157.5 96 79.2
Ah.05g169970 Amaranthus hybridus HOM05D007635 ORTHO05D009612 1.1e-36 157.1 116 69.8
RcHm_v2.0_Chr3g0475481 Rosa chinensis HOM05D007635 ORTHO05D009612 1.5e-36 156.8 93 78.5
Prupe.7G097800 Prunus persica HOM05D007635 ORTHO05D009612 2.5e-36 156.0 93 79.6
AUR62038521 Chenopodium quinoa HOM05D007635 ORTHO05D009612 3.3e-36 155.6 96 77.1
Nn1g07615 Nelumbo nucifera HOM05D007635 ORTHO05D009612 3.3e-36 155.6 150 58.7
Sopen10g003580 Solanum pennellii HOM05D007635 ORTHO05D009612 4.3e-36 155.2 117 68.4
CiPaw.09G019400 Carya illinoinensis HOM05D007635 ORTHO05D009612 5.7e-36 154.8 127 63.0
Solyc10g007670.4 Solanum lycopersicum HOM05D007635 ORTHO05D009612 5.7e-36 154.8 96 77.1
PGSC0003DMG400021288 Solanum tuberosum HOM05D007635 ORTHO05D009612 5.7e-36 154.8 96 77.1
AUR62027757 Chenopodium quinoa HOM05D007635 ORTHO05D009612 7.4e-36 154.5 116 66.4
Peaxi162Scf00035g02213 Petunia axillaris HOM05D007635 ORTHO05D009612 7.4e-36 154.5 121 66.1
CAN.G904.10 Capsicum annuum HOM05D007635 ORTHO05D009612 9.7e-36 154.1 133 61.7
arahy.Tifrunner.gnm1.ann1.X3I9NV Arachis hypogaea HOM05D007635 ORTHO05D009612 1.3e-35 153.7 94 77.7
Os09g0481800 Oryza sativa ssp. japonica HOM05D007635 ORTHO05D009612 1.3e-35 153.7 92 80.4
Zm00001eb101710 Zea mays HOM05D007635 ORTHO05D009612 1.3e-35 153.7 92 80.4
Lalb_Chr20g0111441 Lupinus albus HOM05D007635 ORTHO05D009612 1.7e-35 153.3 94 76.6
Glyma.19G198300 Glycine max HOM05D007635 ORTHO05D009612 2.2e-35 152.9 94 77.7
ClCG10G018500 Citrullus lanatus HOM05D003127 ORTHO05D003709 2.8e-35 152.5 115 67.8
CsaV3_3G037770 Cucumis sativus L. HOM05D007635 ORTHO05D009612 2.8e-35 152.5 93 77.4
FAN02G0889 Fragaria x ananassa HOM05D007635 ORTHO05D009612 2.8e-35 152.5 124 64.5
TAR374G1245 Trochodendron aralioides HOM05D007635 ORTHO05D009612 2.8e-35 152.5 96 75.0
CSS0021722 Camellia sinensis var. sinensis HOM05D007635 ORTHO05D009612 3.7e-35 152.1 96 76.0
CSS0041027 Camellia sinensis var. sinensis HOM05D007635 ORTHO05D009612 3.7e-35 152.1 96 76.0
FvH4_6g20030 Fragaria vesca HOM05D007635 ORTHO05D009612 3.7e-35 152.1 124 63.7
FAN05G0948 Fragaria x ananassa HOM05D007635 ORTHO05D009612 3.7e-35 152.1 93 77.4
FAN14G1263 Fragaria x ananassa HOM05D007635 ORTHO05D009612 3.7e-35 152.1 124 63.7
Phvul.001G194300 Phaseolus vulgaris HOM05D007635 ORTHO05D009612 3.7e-35 152.1 119 63.9
Cc05_g09950 Coffea canephora HOM05D007635 ORTHO05D009612 6.3e-35 151.4 118 67.8
PSO541G5044 Papaver somniferum HOM05D007635 ORTHO05D009612 6.3e-35 151.4 93 75.3
PSO675G5663 Papaver somniferum HOM05D007635 ORTHO05D009612 6.3e-35 151.4 93 75.3
VMungo1383G2560 Vigna mungo HOM05D007635 ORTHO05D009612 6.3e-35 151.4 94 75.5
FAN09G2965 Fragaria x ananassa HOM05D007635 ORTHO05D009612 8.2e-35 151.0 93 76.3
ATR0751G143 Amborella trichopoda HOM05D007635 ORTHO05D009612 1.1e-34 150.6 95 73.7
Glyma.03G200700 Glycine max HOM05D007635 ORTHO05D009612 1.1e-34 150.6 147 56.5
Lj1g0026019 Lotus japonicus HOM05D007635 ORTHO05D009612 1.1e-34 150.6 94 76.6
Medtr7g105840 Medicago truncatula HOM05D007635 ORTHO05D009612 1.8e-34 149.8 118 63.6
MSTRG.12845 Avicennia marina HOM05D007635 ORTHO05D009612 3.1e-34 149.1 114 65.8
Psat3g030120 Pisum sativum HOM05D003127 ORTHO05D003709 6.9e-34 147.9 93 76.3
Actinidia12337 Actinidia chinensis HOM05D007635 ORTHO05D009612 1.5e-33 146.7 163 51.5
Sc26g0000090 Simmondsia chinensis HOM05D007635 ORTHO05D009612 1.5e-33 146.7 96 74.0
TPR.G23321 Trifolium pratense HOM05D007635 ORTHO05D009612 2.6e-33 146.0 98 73.5
Lsat_1_v5_gn_7_99401 Lactuca sativa HOM05D007635 ORTHO05D009612 5.9e-33 144.8 92 72.8
Rhsim06G0182000 Rhododendron simsii HOM05D007635 ORTHO05D009612 2.2e-32 142.9 164 51.2
Rhsim06G0183000 Rhododendron simsii HOM05D007635 ORTHO05D009612 2.2e-32 142.9 164 51.2
CBR_g50773 Chara braunii HOM05D007635 ORTHO05D009612 3.8e-32 142.1 151 51.0
MBI15_g36010_MAGBIO Magnolia biondii HOM05D007635 ORTHO05D009612 8.5e-32 141.0 124 58.9
MBI15_g47427_MAGBIO Magnolia biondii HOM05D007635 ORTHO05D009612 8.5e-32 141.0 124 59.7
SGA_v2.0_scaffold130G34228 Striga asiatica HOM05D007635 ORTHO05D009612 8.5e-32 141.0 105 71.4
ECA236G3620 Erigeron canadensis HOM05D007635 ORTHO05D009612 1.1e-31 140.6 93 72.0
SEGI_23489 Sequoiadendron giganteum HOM05D007635 ORTHO05D009612 1.4e-31 140.2 115 60.0
Pp3c11_15670 Physcomitrium patens HOM05D007635 ORTHO05D009612 3.2e-31 139.0 100 66.0
AagrBONN_evm.TU.Sc2ySwM_362.2476 Anthoceros agrestis HOM05D007635 ORTHO05D009612 2.7e-30 136.0 93 69.9
vmacro12032 Vaccinium macrocarpon HOM05D007635 ORTHO05D009612 8.8e-29 131.0 132 55.3
EL10Ac1g01217 Beta vulgaris HOM05D007635 ORTHO05D009612 2.6e-28 129.4 79 78.5
Atru.BG.99.p Acer truncatum HOM05D007635 ORTHO05D009612 4.4e-28 128.6 71 83.1
MD12G1037400 Malus domestica HOM05D007635 ORTHO05D009612 2.0e-25 119.8 72 75.0
Nitab4.5_0002209g0110 Nicotiana tabacum HOM05D007635 ORTHO05D009612 3.4e-25 119.0 96 64.6
Cpa.g.sc59.77 Carica papaya HOM05D007635 ORTHO05D009612 1.7e-24 116.7 85 63.5
Aqoxy2G03911 Aquilegia oxysepala HOM05D007635 ORTHO05D009612 2.5e-23 112.8 113 51.3
Sed0019283 Sechium edule HOM05D003127 ORTHO05D003709 5.5e-23 111.7 76 71.1
FAN05G1739 Fragaria x ananassa HOM05D007635 ORTHO05D009612 1.2e-22 110.5 62 80.6
Migut.H02083 Erythranthe guttata HOM05D007635 ORTHO05D009612 4.7e-22 108.6 134 45.5
HanXRQChr11g0329581 Helianthus annuus HOM05D007635 ORTHO05D009612 4.7e-22 108.6 64 76.6
MELO3C009519.2 Cucumis melo HOM05D003127 ORTHO05D003709 6.1e-22 108.2 63 79.4
Pp3c11_15610 Physcomitrium patens HOM05D007635 ORTHO05D009612 2.8e-19 99.4 70 65.7
HPP92_017857 Vanilla planifolia HOM05D007635 ORTHO05D009612 1.4e-18 97.1 63 68.3
Gohir.A10G120700 Gossypium hirsutum HOM05D007635 ORTHO05D009612 1.3e-11 73.9 52 67.3
Gohir.D10G145600 Gossypium hirsutum HOM05D007635 ORTHO05D009612 6.3e-11 71.6 52 65.4
Thecc.04G214500 Theobroma cacao HOM05D007635 ORTHO05D009612 2.4e-10 69.7 53 62.3


User provided reference genes

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