Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G20110 Arabidopsis lyrata HOM05D003720 ORTHO05D005312 2.1e-28 128.3 62 100.0
AL552U10010 Arabidopsis lyrata HOM05D003720 ORTHO05D019489 2.1e-28 128.3 62 100.0
AT2G26890 Arabidopsis thaliana HOM05D003720 ORTHO05D005312 2.0e-26 121.7 63 96.8
Carub.0004s0739 Capsella rubella HOM05D003720 ORTHO05D005312 2.9e-25 117.9 64 90.6
Thhalv10001876m.g Eutrema salsugineum HOM05D003720 ORTHO05D005312 8.3e-25 116.3 63 88.9
Aa31LG5G8890 Aethionema arabicum HOM05D003720 ORTHO05D005312 6.6e-22 106.7 62 79.0
THA.LOC104809021 Tarenaya hassleriana HOM05D003720 ORTHO05D005312 7.3e-21 103.2 60 81.7
BcaC02g10846 Brassica carinata HOM05D003720 ORTHO05D005312 6.2e-20 100.1 60 81.7
C04p24570 Brassica napus HOM05D003720 ORTHO05D005312 6.2e-20 100.1 60 81.7
BolC4t23961H Brassica oleracea HOM05D003720 ORTHO05D005312 6.2e-20 100.1 60 81.7
BcaB02g10050 Brassica carinata HOM05D003720 ORTHO05D005312 2.3e-19 98.2 66 74.2
A07p17900 Brassica napus HOM05D003720 ORTHO05D005312 5.2e-19 97.1 62 74.2
BraA07t29508Z Brassica rapa HOM05D003720 ORTHO05D005312 5.2e-19 97.1 62 74.2
FAN26G1450 Fragaria x ananassa HOM05D003720 ORTHO05D005312 1.5e-18 95.5 58 75.9
FAN28G0537 Fragaria x ananassa HOM05D003720 ORTHO05D005312 2.6e-18 94.7 58 75.9
FvH4_1g04290 Fragaria vesca HOM05D003720 ORTHO05D005312 3.4e-18 94.4 58 75.9
FAN19G2601 Fragaria x ananassa HOM05D003720 ORTHO05D005312 3.4e-18 94.4 58 75.9
FAN23G2146 Fragaria x ananassa HOM05D003720 ORTHO05D005312 3.4e-18 94.4 58 75.9
QL02p086231 Quercus lobata HOM05D003720 ORTHO05D005312 4.4e-18 94.0 62 74.2
ClCG06G010450 Citrullus lanatus HOM05D003720 ORTHO05D005312 5.8e-18 93.6 61 73.8
Haze_25676 Corylus avellana HOM05D003720 ORTHO05D005312 5.8e-18 93.6 52 82.7
MELO3C025310.2 Cucumis melo HOM05D003720 ORTHO05D005312 5.8e-18 93.6 61 73.8
TWI63G0927 Tripterygium wilfordii HOM05D003720 ORTHO05D005312 5.8e-18 93.6 53 81.1
Zm00001eb024320 Zea mays HOM05D003720 ORTHO05D019489 5.8e-18 93.6 61 65.6
RcHm_v2.0_Chr2g0089861 Rosa chinensis HOM05D003720 ORTHO05D005312 9.8e-18 92.8 52 82.7
TPR.G26776 Trifolium pratense HOM05D003720 ORTHO05D005312 9.8e-18 92.8 52 80.8
HPP92_014852 Vanilla planifolia HOM05D003720 ORTHO05D005312 9.8e-18 92.8 55 80.0
CANSAT56G4488 Cannabis sativa HOM05D003720 ORTHO05D005312 1.3e-17 92.4 62 69.4
Cpa.g.sc23.151 Carica papaya HOM05D003720 ORTHO05D019489 1.3e-17 92.4 62 72.6
CsaV3_1G030910 Cucumis sativus L. HOM05D003720 ORTHO05D005312 1.3e-17 92.4 60 73.3
Potri.018G072600 Populus trichocarpa HOM05D003720 ORTHO05D005312 1.3e-17 92.4 52 82.7
Prupe.7G234400 Prunus persica HOM05D003720 ORTHO05D005312 1.3e-17 92.4 62 71.0
Lalb_Chr12g0197621 Lupinus albus HOM05D003720 ORTHO05D005312 1.7e-17 92.0 47 89.4
arahy.Tifrunner.gnm1.ann1.F3YJTF Arachis hypogaea HOM05D003720 ORTHO05D005312 2.2e-17 91.7 69 68.1
Manes.03G068200 Manihot esculenta HOM05D003720 ORTHO05D005312 2.2e-17 91.7 62 71.0
Sabra18G0064000 Salix brachista HOM05D003720 ORTHO05D005312 2.2e-17 91.7 52 80.8
arahy.Tifrunner.gnm1.ann1.S8F21X Arachis hypogaea HOM05D003720 ORTHO05D005312 2.9e-17 91.3 69 66.7
DCAR_028737 Daucus carota HOM05D003720 ORTHO05D005312 2.9e-17 91.3 60 71.7
Lj4g0009521 Lotus japonicus HOM05D003720 ORTHO05D005312 2.9e-17 91.3 64 70.3
Sc08g0004790 Simmondsia chinensis HOM05D003720 ORTHO05D005312 2.9e-17 91.3 61 67.2
GSVIVG01015441001 Vitis vinifera HOM05D003720 ORTHO05D005312 2.9e-17 91.3 62 72.6
Sed0024242 Sechium edule HOM05D003720 ORTHO05D005312 3.7e-17 90.9 46 84.8
unitig_22.g6632 Utricularia gibba HOM05D003720 ORTHO05D005312 3.7e-17 90.9 70 61.4
Lalb_Chr13g0302281 Lupinus albus HOM05D003720 ORTHO05D005312 4.9e-17 90.5 47 87.2
AUR62027382 Chenopodium quinoa HOM05D003720 ORTHO05D005312 6.4e-17 90.1 53 75.5
AUR62031297 Chenopodium quinoa HOM05D003720 ORTHO05D005312 6.4e-17 90.1 53 75.5
Cc06_g09260 Coffea canephora HOM05D003720 ORTHO05D005312 6.4e-17 90.1 50 84.0
SHI03186 Sapria himalayana HOM05D003720 ORTHO05D005312 6.4e-17 90.1 50 82.0
VMungo1215G1596 Vigna mungo HOM05D003720 ORTHO05D005312 6.4e-17 90.1 60 66.7
Ca_02544_v3 Cicer arietinum L. HOM05D003720 ORTHO05D005312 8.3e-17 89.7 60 73.3
HanXRQChr10g0317421 Helianthus annuus HOM05D003720 ORTHO05D005312 8.3e-17 89.7 48 85.4
MD02G1042600 Malus domestica HOM05D003720 ORTHO05D005312 8.3e-17 89.7 58 70.7
MD15G1181200 Malus domestica HOM05D003720 ORTHO05D005312 8.3e-17 89.7 65 67.7
MSTRG.6069 Avicennia marina HOM05D003720 ORTHO05D005312 1.1e-16 89.4 46 84.8
Cfa003295 Carpinus fangiana HOM05D003720 ORTHO05D005312 1.1e-16 89.4 52 80.8
Ciclev10007224m.g Citrus clementina HOM05D003720 ORTHO05D005312 1.1e-16 89.4 62 69.4
Migut.J01184 Erythranthe guttata HOM05D003720 ORTHO05D005312 1.1e-16 89.4 46 84.8
Glyma.17G120500 Glycine max HOM05D003720 ORTHO05D005312 1.1e-16 89.4 64 65.6
Medtr4g112045 Medicago truncatula HOM05D003720 ORTHO05D005312 1.1e-16 89.4 60 68.3
Phvul.003G176300 Phaseolus vulgaris HOM05D003720 ORTHO05D005312 1.1e-16 89.4 60 66.7
Psat4g042800 Pisum sativum HOM05D003720 ORTHO05D005312 1.1e-16 89.4 60 73.3
PGR102G1985 Punica granatum HOM05D003720 ORTHO05D005312 1.1e-16 89.4 53 73.6
SGA_v2.0_scaffold45G17079 Striga asiatica HOM05D003720 ORTHO05D005312 1.1e-16 89.4 66 72.7
Duzib168G1140 Durio zibethinus HOM05D003720 ORTHO05D005312 1.4e-16 89.0 52 75.0
Glyma.05G012400 Glycine max HOM05D003720 ORTHO05D005312 1.4e-16 89.0 54 75.9
Mapoly0043s0138 Marchantia polymorpha HOM05D003720 ORTHO05D005312 1.4e-16 89.0 46 87.0
Oeu002223.1 Olea europaea HOM05D003720 ORTHO05D005312 1.4e-16 89.0 76 61.8
Atru.chr7.1286 Acer truncatum HOM05D003720 ORTHO05D005312 1.9e-16 88.6 45 86.7
CiPaw.03G235900 Carya illinoinensis HOM05D003720 ORTHO05D005312 1.9e-16 88.6 47 83.0
Lsat_1_v5_gn_5_99761 Lactuca sativa HOM05D003720 ORTHO05D005312 1.9e-16 88.6 48 83.3
EL10Ac8g19346 Beta vulgaris HOM05D003720 ORTHO05D005312 2.4e-16 88.2 53 77.4
COL.COLO4_34940 Corchorus olitorius HOM05D003720 ORTHO05D005312 2.4e-16 88.2 46 82.6
ECA234G2971 Erigeron canadensis HOM05D003720 ORTHO05D005312 2.4e-16 88.2 50 80.0
Gohir.A06G060266 Gossypium hirsutum HOM05D003720 ORTHO05D019489 2.4e-16 88.2 46 82.6
Gohir.D06G058501 Gossypium hirsutum HOM05D003720 ORTHO05D005312 2.4e-16 88.2 46 82.6
Gorai.010G068600 Gossypium raimondii HOM05D003720 ORTHO05D005312 2.4e-16 88.2 46 82.6
PSO170G5328 Papaver somniferum HOM05D003720 ORTHO05D005312 2.4e-16 88.2 75 64.0
PSO357G0216 Papaver somniferum HOM05D003720 ORTHO05D005312 2.4e-16 88.2 75 64.0
Thecc.09G115700 Theobroma cacao HOM05D003720 ORTHO05D005312 2.4e-16 88.2 46 82.6
CDE07G1715 Ceratophyllum demersum HOM05D003720 ORTHO05D005312 3.2e-16 87.8 57 73.7
SalBow6G2056 Salvia bowleyana HOM05D003720 ORTHO05D005312 3.2e-16 87.8 53 75.5
Hund12707 Selenicereus undatus HOM05D003720 ORTHO05D005312 3.2e-16 87.8 46 84.8
Actinidia07451 Actinidia chinensis HOM05D003720 ORTHO05D005312 4.1e-16 87.4 48 83.3
Dinv36598 Davidia involucrata HOM05D003720 ORTHO05D005312 4.1e-16 87.4 48 81.2
Dinv41570 Davidia involucrata HOM05D003720 ORTHO05D005312 4.1e-16 87.4 53 77.4
Gorai.009G022700 Gossypium raimondii HOM05D003720 ORTHO05D005312 4.1e-16 87.4 46 82.6
ATR0561G176 Amborella trichopoda HOM05D003720 ORTHO05D005312 5.4e-16 87.0 74 62.2
CAN.G368.4 Capsicum annuum HOM05D003720 ORTHO05D005312 7.0e-16 86.7 53 73.6
vmacro06189 Vaccinium macrocarpon HOM05D003720 ORTHO05D005312 7.0e-16 86.7 53 75.5
Nn8g39280 Nelumbo nucifera HOM05D003720 ORTHO05D005312 9.2e-16 86.3 53 75.5
TAR383G0813 Trochodendron aralioides HOM05D003720 ORTHO05D005312 9.2e-16 86.3 53 75.5
CSS0011692 Camellia sinensis var. sinensis HOM05D003720 ORTHO05D005312 1.2e-15 85.9 48 79.2
Gohir.A05G021000 Gossypium hirsutum HOM05D003720 ORTHO05D005312 1.2e-15 85.9 46 80.4
Manes.16G064500 Manihot esculenta HOM05D003720 ORTHO05D005312 1.2e-15 85.9 58 72.4
PGSC0003DMG400013949 Solanum tuberosum HOM05D003720 ORTHO05D005312 1.2e-15 85.9 53 73.6
Hma1.2p1_0245F.1_g101380 Hydrangea macrophylla HOM05D003720 ORTHO05D019489 2.0e-15 85.1 48 77.1
SMO358G0126 Selaginella moellendorffii HOM05D003720 ORTHO05D005312 2.0e-15 85.1 48 77.1
Sopen08g011820 Solanum pennellii HOM05D003720 ORTHO05D005312 2.0e-15 85.1 48 79.2
Aqoxy7G01852 Aquilegia oxysepala HOM05D003720 ORTHO05D005312 2.7e-15 84.7 46 82.6
Zm00001eb390320 Zea mays HOM05D003720 ORTHO05D005312 3.5e-15 84.3 46 78.3
Rhsim03G0245400 Rhododendron simsii HOM05D003720 ORTHO05D005312 6.0e-15 83.6 48 79.2
Peaxi162Scf00256g00815 Petunia axillaris HOM05D003720 ORTHO05D005312 1.0e-14 82.8 61 68.9
AagrBONN_evm.TU.Sc2ySwM_368.1081 Anthoceros agrestis HOM05D003720 ORTHO05D005312 3.0e-14 81.3 46 78.3
Pp3c4_24650 Physcomitrium patens HOM05D003720 ORTHO05D005312 4.3e-13 77.4 47 70.2
Pp3c13_3460 Physcomitrium patens HOM05D003720 ORTHO05D005312 9.5e-13 76.3 51 64.7
CBR_g4479 Chara braunii HOM05D003720 ORTHO05D005312 1.6e-12 75.5 46 65.2
Eucgr.C04138 Eucalyptus grandis HOM05D003720 ORTHO05D005312 1.4e-11 72.4 37 83.8
Actinidia27747 Actinidia chinensis HOM05D003720 ORTHO05D019489 9.2e-08 59.7 29 89.7
Cre12.g486209 Chlamydomonas reinhardtii HOM05D003720 ORTHO05D005312 6.0e-07 57.0 48 47.9


User provided reference genes

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