Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 2048.9 1086 100.0
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1953.3 1100 94.4
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1917.9 1036 93.7
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1875.5 1039 91.6
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1840.1 1042 90.1
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1832.0 1041 89.8
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1823.5 1036 88.9
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1816.6 1036 88.2
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1811.2 1038 88.1
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1806.2 1036 87.8
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1803.1 1048 87.2
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1803.1 1035 87.8
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1744.9 1051 85.5
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1730.7 996 88.8
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1595.9 1033 79.2
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1461.4 1049 70.4
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1454.1 1039 70.4
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1441.8 1050 68.8
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1439.5 1039 69.5
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1439.1 1039 69.5
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1435.2 1039 69.4
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1429.8 1031 69.8
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1426.8 1039 69.1
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1417.5 1044 67.6
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1414.8 1040 68.0
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1406.7 1038 67.0
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1399.8 1040 66.8
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1397.5 1037 67.6
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1397.1 1003 70.2
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1394.0 1044 67.0
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1390.6 990 69.2
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1381.3 1038 66.8
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1380.9 1048 66.1
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1379.4 1039 66.0
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1369.0 1038 66.5
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1367.1 1045 65.7
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1366.3 1039 66.2
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1365.5 1034 67.1
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1360.5 1044 65.5
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1350.1 1056 64.7
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1346.6 1039 64.8
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1339.3 1041 64.3
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1333.9 1030 64.2
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1333.2 1054 64.0
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1331.6 1041 64.9
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1323.9 924 71.1
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1323.5 1076 63.5
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1323.1 1047 64.0
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1320.1 1030 65.0
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1320.1 1046 64.2
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1319.7 1079 63.0
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1313.9 1041 63.4
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1308.5 1039 63.4
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1299.6 1150 58.4
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1299.3 1031 62.9
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1297.3 1046 63.6
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1297.0 1052 62.8
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1296.2 1053 62.8
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1295.4 1033 63.1
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1295.4 1040 63.5
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1291.9 1038 63.4
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1291.2 1035 62.0
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1290.4 1052 62.8
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1290.4 1053 62.9
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1287.7 1046 62.3
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1285.8 1031 62.3
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1284.6 1035 64.6
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1282.3 1053 62.7
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1282.3 1050 62.2
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1281.5 1057 61.1
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1281.2 1034 63.6
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1278.8 1046 62.5
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1277.7 1031 62.7
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1275.0 1047 61.4
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1274.6 1047 62.7
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1270.8 1036 61.5
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1270.8 1037 62.6
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1267.3 1052 62.0
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1262.3 1045 62.1
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1255.4 1027 62.0
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1255.0 1042 61.1
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1251.1 1035 60.5
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1250.0 1038 62.7
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1242.6 993 61.8
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1240.3 1036 61.3
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1236.1 992 61.6
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1236.1 1039 60.6
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1210.3 1039 60.4
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1202.6 1030 59.3
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1202.6 991 61.0
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1200.7 1037 60.3
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1199.5 1007 59.8
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1194.1 922 64.4
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1191.4 832 70.7
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1183.3 999 60.7
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 0.0e+00 1176.8 1018 59.5
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1172.1 1062 58.0
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 0.0e+00 1160.6 1023 57.8
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 1145.2 1041 56.0
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1133.2 1037 56.1
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 0.0e+00 1121.7 827 66.6
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 0.0e+00 1078.5 1030 55.5
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 1.4e-308 1063.1 1045 55.4
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 6.0e-304 1047.7 869 62.1
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 1.6e-293 1013.1 748 66.6
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 2.4e-292 1009.2 956 54.5
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 5.3e-292 1008.1 1028 52.6
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 5.8e-291 1004.6 677 73.3
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 2.9e-282 975.7 1004 50.2
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 6.1e-272 941.4 783 61.3
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 2.0e-267 926.4 1000 48.2
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 3.6e-264 915.6 965 49.2
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 2.5e-249 866.3 1005 46.3
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 1.4e-223 780.8 664 60.5
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 9.5e-209 731.5 469 75.3
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 9.5e-209 731.5 469 75.3
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.7e-197 694.1 574 61.5
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 2.4e-196 690.3 1033 39.1
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 1.7e-144 518.1 320 78.4
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 3.7e-96 357.5 398 50.5
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 4.3e-60 237.7 202 58.9
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 7.6e-57 226.9 580 28.1
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 3.9e-53 214.5 143 69.9
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 1.0e-48 199.9 164 62.8
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 8.8e-45 186.8 172 60.5
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 1.6e-38 166.0 624 24.2
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.6e-38 166.0 204 45.1
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 5.1e-37 161.0 177 51.4
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 4.8e-35 154.5 354 30.8
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 2.6e-33 148.7 181 47.0
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 8.5e-32 143.7 167 48.5
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.8e-26 125.9 121 57.9
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 1.2e-25 123.2 131 49.6
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 3.4e-20 105.1 97 52.6
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 1.3e-19 103.2 248 27.8
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 8.5e-16 90.5 98 44.9
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 1.0e-13 83.6 74 60.8
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 1.2e-12 80.1 302 27.2
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 1.3e-11 76.6 68 57.4
Solyc09g037030.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 5.0e-08 64.7 123 36.6
PGSC0003DMG400005432 Solanum tuberosum HOM05D004682 ORTHO05D003903 1.6e-06 59.7 39 64.1
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 4.7e-06 58.2 50 44.0


User provided reference genes

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