Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G47550 Arabidopsis lyrata HOM05D006332 ORTHO05D008421 5.7e-253 877.1 439 100.0
AT2G47960 Arabidopsis thaliana HOM05D006332 ORTHO05D008421 2.7e-247 858.2 434 98.4
Carub.0004s3069 Capsella rubella HOM05D006332 ORTHO05D008421 3.3e-237 824.7 436 95.6
Sp4g29880 Schrenkiella parvula HOM05D006332 ORTHO05D008421 1.1e-235 819.7 438 93.6
Thhalv10018568m.g Eutrema salsugineum HOM05D006332 ORTHO05D008421 5.9e-234 813.9 441 93.2
BcaC02g12534 Brassica carinata HOM05D006332 ORTHO05D008421 2.7e-231 805.1 435 92.4
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 1.3e-228 796.2 430 92.3
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 1.3e-228 796.2 430 92.3
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 3.8e-225 784.6 430 90.9
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 3.8e-225 784.6 430 90.9
BcaB02g08727 Brassica carinata HOM05D006332 ORTHO05D008421 9.5e-224 780.0 439 90.0
THA.LOC104817534 Tarenaya hassleriana HOM05D006332 ORTHO05D008421 1.9e-211 739.2 440 85.0
CARHR143350 Cardamine hirsuta HOM05D006332 ORTHO05D008421 1.1e-208 729.9 387 94.6
Aa31LG1G29380 Aethionema arabicum HOM05D006332 ORTHO05D008421 1.5e-208 729.6 441 85.0
Cpa.g.sc27.66 Carica papaya HOM05D006332 ORTHO05D008421 2.6e-181 639.0 437 73.7
Thecc.06G190700 Theobroma cacao HOM05D006332 ORTHO05D008421 1.7e-177 626.3 444 70.9
Dinv07538 Davidia involucrata HOM05D006332 ORTHO05D008421 3.9e-177 625.2 441 71.9
Gohir.D06G130900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.5e-176 623.2 441 70.7
Duzib235G1125 Durio zibethinus HOM05D006332 ORTHO05D008421 1.3e-175 620.2 441 71.0
TAR629G2846 Trochodendron aralioides HOM05D006332 ORTHO05D008421 3.6e-175 618.6 439 70.2
CiPaw.09G057500 Carya illinoinensis HOM05D006332 ORTHO05D008421 1.1e-174 617.1 440 71.1
GSVIVG01002030001 Vitis vinifera HOM05D006332 ORTHO05D008421 3.1e-174 615.5 441 70.7
Gohir.A06G126100 Gossypium hirsutum HOM05D006332 ORTHO05D008421 6.9e-174 614.4 441 69.8
Actinidia01892 Actinidia chinensis HOM05D006332 ORTHO05D008421 5.8e-173 611.3 441 70.5
Prupe.4G044000 Prunus persica HOM05D006332 ORTHO05D008421 5.8e-173 611.3 441 70.1
Lj4g0020818 Lotus japonicus HOM05D006332 ORTHO05D008421 1.7e-172 609.8 429 70.6
Cc02_g13080 Coffea canephora HOM05D006332 ORTHO05D008421 6.4e-172 607.8 438 69.6
PGSC0003DMG400022831 Solanum tuberosum HOM05D006332 ORTHO05D008421 6.4e-172 607.8 448 69.0
COL.COLO4_31500 Corchorus olitorius HOM05D006332 ORTHO05D008421 1.4e-171 606.7 465 68.2
Duzib160G0593 Durio zibethinus HOM05D006332 ORTHO05D008421 1.9e-171 606.3 438 70.3
Phvul.002G227700 Phaseolus vulgaris HOM05D006332 ORTHO05D008421 2.4e-171 605.9 431 70.5
Lj1C1207T6 Lonicera japonica HOM05D006332 ORTHO05D008421 5.4e-171 604.7 435 69.4
Solyc10g008990.4 Solanum lycopersicum HOM05D006332 ORTHO05D008421 7.1e-171 604.4 445 68.5
Ca_18532_v3 Cicer arietinum L. HOM05D006332 ORTHO05D008421 1.2e-170 603.6 433 70.0
Haze_06500 Corylus avellana HOM05D006332 ORTHO05D008421 1.2e-170 603.6 447 68.5
Glyma.13G181100 Glycine max HOM05D006332 ORTHO05D008421 2.1e-170 602.8 436 69.7
FAN16G1437 Fragaria x ananassa HOM05D006332 ORTHO05D008421 3.5e-170 602.1 436 69.7
Gorai.010G152800 Gossypium raimondii HOM05D006332 ORTHO05D008421 7.9e-170 600.9 428 70.6
TPR.G12057 Trifolium pratense HOM05D006332 ORTHO05D008421 3.0e-169 599.0 432 70.6
PGR004G2698 Punica granatum HOM05D006332 ORTHO05D008421 5.1e-169 598.2 442 67.9
RcHm_v2.0_Chr5g0008031 Rosa chinensis HOM05D006332 ORTHO05D008421 6.7e-169 597.8 436 69.0
Psat7g112800 Pisum sativum HOM05D006332 ORTHO05D008421 1.5e-168 596.7 440 69.5
FvH4_3g04870 Fragaria vesca HOM05D006332 ORTHO05D008421 1.9e-168 596.3 438 68.5
Medtr4g088960 Medicago truncatula HOM05D006332 ORTHO05D008421 1.9e-168 596.3 429 69.7
Manes.16G025600 Manihot esculenta HOM05D006332 ORTHO05D008421 5.6e-168 594.7 442 69.2
Eucgr.D00641 Eucalyptus grandis HOM05D006332 ORTHO05D008421 7.4e-168 594.3 440 68.0
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 7.4e-168 594.3 432 68.8
MD10G1296600 Malus domestica HOM05D006332 ORTHO05D008421 7.4e-168 594.3 445 67.6
TWI38G1702 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 9.6e-168 594.0 443 69.1
VMungo0251G1219 Vigna mungo HOM05D006332 ORTHO05D008421 9.6e-168 594.0 428 69.6
QL05p039635 Quercus lobata HOM05D006332 ORTHO05D008421 2.8e-167 592.4 446 68.2
Lalb_Chr16g0383661 Lupinus albus HOM05D006332 ORTHO05D008421 1.1e-166 590.5 433 67.7
MELO3C002589.2 Cucumis melo HOM05D006332 ORTHO05D008421 1.4e-166 590.1 440 67.3
arahy.Tifrunner.gnm1.ann1.5TP18E Arachis hypogaea HOM05D006332 ORTHO05D008421 1.8e-166 589.7 432 67.4
Potri.004G040500 Populus trichocarpa HOM05D006332 ORTHO05D008421 2.4e-166 589.3 442 68.6
arahy.Tifrunner.gnm1.ann1.I941VF Arachis hypogaea HOM05D006332 ORTHO05D008421 3.1e-166 589.0 428 68.2
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 4.0e-166 588.6 438 68.3
Hma1.2p1_0881F.1_g231970 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 6.9e-166 587.8 438 69.4
Glyma.07G195200 Glycine max HOM05D006332 ORTHO05D008421 2.6e-165 585.9 433 68.8
CANSAT35G2021 Cannabis sativa HOM05D006332 ORTHO05D008421 3.4e-165 585.5 437 68.0
ClCG03G005920 Citrullus lanatus HOM05D006332 ORTHO05D008421 5.8e-165 584.7 437 67.0
CsaV3_1G012160 Cucumis sativus L. HOM05D006332 ORTHO05D008421 7.6e-165 584.3 440 66.6
MSTRG.13186 Avicennia marina HOM05D006332 ORTHO05D008421 1.7e-164 583.2 440 69.5
CSS0022240 Camellia sinensis var. sinensis HOM05D006332 ORTHO05D008421 1.7e-164 583.2 439 69.0
Sed0003237 Sechium edule HOM05D006332 ORTHO05D008421 1.7e-164 583.2 439 66.7
MD05G1316100 Malus domestica HOM05D006332 ORTHO05D008421 2.2e-164 582.8 445 65.6
Oeu053924.1 Olea europaea HOM05D006332 ORTHO05D008421 8.4e-164 580.9 434 68.4
Gohir.A10G024200 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.9e-163 579.7 442 66.5
TWI63G1670 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 3.5e-162 575.5 461 65.7
Gorai.011G026200 Gossypium raimondii HOM05D006332 ORTHO05D008421 1.3e-161 573.5 438 66.4
Gohir.D10G024900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 3.0e-161 572.4 438 67.4
Migut.H01511 Erythranthe guttata HOM05D006332 ORTHO05D008421 1.1e-160 570.5 434 67.1
HanXRQChr04g0124141 Helianthus annuus HOM05D006332 ORTHO05D008421 1.1e-160 570.5 439 65.4
Nitab4.5_0003942g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 3.3e-160 568.9 449 66.8
PSO063G3883 Papaver somniferum HOM05D006332 ORTHO05D008421 7.4e-160 567.8 442 64.3
Peaxi162Scf00530g00823 Petunia axillaris HOM05D006332 ORTHO05D008421 7.4e-160 567.8 444 66.4
Aqoxy1G02544 Aquilegia oxysepala HOM05D006332 ORTHO05D008421 2.1e-159 566.2 437 63.8
ATR0680G340 Amborella trichopoda HOM05D006332 ORTHO05D008421 1.4e-158 563.5 438 65.5
PSO782G1256 Papaver somniferum HOM05D006332 ORTHO05D008421 4.0e-158 562.0 442 63.8
CDE08G0172 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 6.9e-158 561.2 438 65.1
Nn6g34413 Nelumbo nucifera HOM05D006332 ORTHO05D008421 2.2e-156 556.2 443 61.9
EL10Ac8g20347 Beta vulgaris HOM05D006332 ORTHO05D008421 3.2e-155 552.4 426 66.4
HPP92_001753 Vanilla planifolia HOM05D006332 ORTHO05D008421 4.6e-154 548.5 444 63.3
ECA236G3091 Erigeron canadensis HOM05D006332 ORTHO05D008421 1.3e-153 547.0 438 63.9
ECA248G3961 Erigeron canadensis HOM05D006332 ORTHO05D008421 1.3e-153 547.0 437 62.5
HanXRQChr01g0003951 Helianthus annuus HOM05D006332 ORTHO05D008421 3.9e-153 545.4 430 62.6
AUR62016979 Chenopodium quinoa HOM05D006332 ORTHO05D008421 9.7e-152 540.8 435 64.8
Zm00001eb044550 Zea mays HOM05D006332 ORTHO05D008421 6.3e-151 538.1 439 63.3
Sabra04G0025000 Salix brachista HOM05D006332 ORTHO05D008421 8.2e-151 537.7 499 60.1
Ciclev10015324m.g Citrus clementina HOM05D006332 ORTHO05D008421 9.0e-150 534.3 446 63.0
AUR62014792 Chenopodium quinoa HOM05D006332 ORTHO05D008421 6.1e-146 521.5 448 62.5
Hma1.2p1_0126F.1_g059220 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 1.1e-144 517.3 450 61.1
Nn1g04020 Nelumbo nucifera HOM05D006332 ORTHO05D008421 1.1e-142 510.8 368 69.6
Lsat_1_v5_gn_7_19001 Lactuca sativa HOM05D006332 ORTHO05D008421 8.5e-140 501.1 433 61.2
MBI17_g03748_MAGBIO Magnolia biondii HOM05D006332 ORTHO05D008421 1.6e-138 496.9 437 60.4
SGA_v2.0_scaffold49G18281 Striga asiatica HOM05D006332 ORTHO05D008421 7.9e-138 494.6 460 58.7
Cfa000416 Carpinus fangiana HOM05D006332 ORTHO05D008421 1.1e-131 474.2 340 69.1
DCAR_004087 Daucus carota HOM05D006332 ORTHO05D008421 9.4e-131 471.1 348 68.1
Hma1.2p1_0881F.1_g231960 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 3.6e-130 469.2 345 70.1
Lsat_1_v5_gn_1_127821 Lactuca sativa HOM05D006332 ORTHO05D008421 1.1e-128 464.2 437 55.1
Mapoly0122s0006 Marchantia polymorpha HOM05D006332 ORTHO05D008421 4.8e-127 458.8 437 51.3
AagrBONN_evm.TU.Sc2ySwM_344.1820 Anthoceros agrestis HOM05D006332 ORTHO05D008421 1.2e-125 454.1 436 52.8
Pp3c1_28670 Physcomitrium patens HOM05D006332 ORTHO05D008421 2.9e-124 449.5 431 52.0
Nitab4.5_0009738g0010 Nicotiana tabacum HOM05D006332 ORTHO05D008421 4.2e-123 445.7 360 65.3
Duzib192G0908 Durio zibethinus HOM05D006332 ORTHO05D008421 5.5e-123 445.3 356 67.1
Hund21245 Selenicereus undatus HOM05D006332 ORTHO05D008421 1.6e-122 443.7 436 56.0
unitig_8.g3355 Utricularia gibba HOM05D006332 ORTHO05D008421 6.1e-122 441.8 444 55.4
SMO364G0571 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 8.5e-116 421.4 433 50.1
CAN.G413.15 Capsicum annuum HOM05D006332 ORTHO05D008421 4.7e-114 415.6 330 63.9
Atru.chr10.1934 Acer truncatum HOM05D006332 ORTHO05D008421 2.8e-111 406.4 291 71.1
Sc24g0000810 Simmondsia chinensis HOM05D006332 ORTHO05D008421 3.1e-110 402.9 606 40.9
CBR_g24248 Chara braunii HOM05D006332 ORTHO05D008421 1.1e-91 341.3 448 42.6
SMO364G0067 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 3.0e-84 316.6 314 51.0
Gohir.A10G024325 Gossypium hirsutum HOM05D006332 ORTHO05D008421 5.2e-81 305.8 209 74.2
SHI01800 Sapria himalayana HOM05D006332 ORTHO05D008421 3.2e-78 296.6 247 63.2
Nitab4.5_0009738g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 1.5e-67 261.2 242 56.2
Sopen10g004770 Solanum pennellii HOM05D006332 ORTHO05D008421 9.0e-65 251.9 215 57.7
Gohir.A10G024350 Gossypium hirsutum HOM05D006332 ORTHO05D008421 5.1e-44 183.0 154 59.7
PRCOL_00003805 Prasinoderma coloniale HOM05D006332 ORTHO05D008421 3.3e-43 180.3 420 32.6
SHI01798 Sapria himalayana HOM05D000002 ORTHO05D000001 1.1e-33 148.7 201 45.8
Atru.chr10.1933 Acer truncatum HOM05D006332 ORTHO05D008421 1.4e-30 138.3 116 54.3
Ciclev10009862m.g Citrus clementina HOM05D006332 ORTHO05D008421 4.5e-24 116.7 104 58.7
PSO017G7020 Papaver somniferum HOM05D006332 ORTHO05D000676 2.7e-21 107.5 111 44.1
PSO170G5489 Papaver somniferum HOM05D006332 ORTHO05D008421 1.5e-19 101.7 96 49.0
Nitab4.5_0009738g0030 Nicotiana tabacum HOM05D006332 ORTHO05D008421 1.1e-17 95.5 91 59.3
TPR.G24681 Trifolium pratense HOM05D006332 ORTHO05D001923 7.0e-17 92.8 59 71.2
CDE02G4141 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 4.8e-10 70.1 123 35.0
Os10g0498800 Oryza sativa ssp. japonica HOM05D006332 ORTHO05D008421 4.8e-10 70.1 60 53.3
Cpa.g.sc777.3 Carica papaya HOM05D006332 ORTHO05D034078 2.5e-06 57.8 34 79.4
Haze_21185 Corylus avellana HOM05D000405 ORTHO05D000712 7.2e-06 56.2 25 92.0


User provided reference genes

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