Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G47370 Arabidopsis lyrata HOM05D005667 ORTHO05D007299 4.7e-235 817.4 390 100.0
AT2G47790 Arabidopsis thaliana HOM05D005667 ORTHO05D007299 9.6e-220 766.5 393 93.9
Sp4g29720 Schrenkiella parvula HOM05D005667 ORTHO05D007299 1.6e-214 749.2 393 90.6
CARHR143160 Cardamine hirsuta HOM05D005667 ORTHO05D007299 1.3e-208 729.6 393 90.1
Carub.0004s3050 Capsella rubella HOM05D005667 ORTHO05D007299 3.0e-205 718.4 389 86.4
Thhalv10001494m.g Eutrema salsugineum HOM05D005667 ORTHO05D007299 1.3e-203 713.0 390 88.5
Aa31LG1G29130 Aethionema arabicum HOM05D005667 ORTHO05D007299 1.9e-199 699.1 396 85.1
BcaB06g29498 Brassica carinata HOM05D005667 ORTHO05D007299 2.2e-187 659.1 408 78.4
THA.LOC104817511 Tarenaya hassleriana HOM05D005667 ORTHO05D007299 4.2e-183 644.8 396 78.3
C04p72980 Brassica napus HOM05D005667 ORTHO05D007299 5.2e-181 637.9 388 80.2
BolC4t28779H Brassica oleracea HOM05D005667 ORTHO05D007299 5.2e-181 637.9 387 80.6
A04p35070 Brassica napus HOM05D005667 ORTHO05D007299 8.2e-179 630.6 388 80.4
BraA04t18943Z Brassica rapa HOM05D005667 ORTHO05D007299 2.0e-177 625.9 389 79.9
BcaC02g06992 Brassica carinata HOM05D005667 ORTHO05D007299 2.1e-174 615.9 386 78.0
Cfa005935 Carpinus fangiana HOM05D005667 ORTHO05D007299 8.3e-155 550.8 391 68.0
QL12p027280 Quercus lobata HOM05D005667 ORTHO05D007299 5.4e-154 548.1 398 66.8
Atru.chr5.1169 Acer truncatum HOM05D005667 ORTHO05D007299 7.0e-154 547.7 392 68.9
Actinidia32226 Actinidia chinensis HOM05D005667 ORTHO05D007299 1.0e-152 543.9 386 66.6
Dinv33042 Davidia involucrata HOM05D005667 ORTHO05D007299 1.9e-151 539.7 388 66.5
Haze_04910 Corylus avellana HOM05D005667 ORTHO05D007299 5.6e-151 538.1 422 63.0
MD03G1286100 Malus domestica HOM05D005667 ORTHO05D007299 1.2e-150 537.0 386 66.3
Psat3g021960 Pisum sativum HOM05D005667 ORTHO05D007299 1.6e-150 536.6 393 66.4
Medtr7g108870 Medicago truncatula HOM05D005667 ORTHO05D007299 8.0e-150 534.3 384 66.7
Medtr8g058590 Medicago truncatula HOM05D005667 ORTHO05D007299 8.0e-150 534.3 384 66.7
VMungo1383G3519 Vigna mungo HOM05D005667 ORTHO05D007299 2.0e-148 529.6 391 66.2
Phvul.001G206300 Phaseolus vulgaris HOM05D005667 ORTHO05D007299 3.4e-148 528.9 391 66.0
CANSAT25G0856 Cannabis sativa HOM05D005667 ORTHO05D007299 5.8e-148 528.1 385 64.4
Thecc.01G298400 Theobroma cacao HOM05D005667 ORTHO05D007299 5.8e-148 528.1 394 65.5
Duzib138G1280 Durio zibethinus HOM05D005667 ORTHO05D007299 3.7e-147 525.4 389 65.6
MD11G1306000 Malus domestica HOM05D005667 ORTHO05D007299 4.9e-147 525.0 386 64.8
Nn4g25820 Nelumbo nucifera HOM05D005667 ORTHO05D007299 4.9e-147 525.0 388 66.2
TAR365G0445 Trochodendron aralioides HOM05D005667 ORTHO05D007299 4.9e-147 525.0 386 65.0
TAR627G0762 Trochodendron aralioides HOM05D005667 ORTHO05D007299 4.9e-147 525.0 386 64.8
Glyma.03G213700 Glycine max HOM05D005667 ORTHO05D007299 6.4e-147 524.6 394 66.2
Ca_09151_v3 Cicer arietinum L. HOM05D005667 ORTHO05D007299 1.1e-146 523.9 392 64.3
Glyma.19G210500 Glycine max HOM05D005667 ORTHO05D007299 1.9e-146 523.1 394 65.7
FvH4_2g25530 Fragaria vesca HOM05D005667 ORTHO05D007299 4.1e-146 521.9 392 65.1
Lj1g0013419 Lotus japonicus HOM05D005667 ORTHO05D007299 4.1e-146 521.9 396 65.2
TWI23G0451 Tripterygium wilfordii HOM05D005667 ORTHO05D007299 4.1e-146 521.9 393 65.4
COL.COLO4_23365 Corchorus olitorius HOM05D005667 ORTHO05D007299 5.4e-146 521.5 394 65.7
QL12p026655 Quercus lobata HOM05D005667 ORTHO05D007299 9.2e-146 520.8 374 67.4
arahy.Tifrunner.gnm1.ann1.AQSE8X Arachis hypogaea HOM05D005667 ORTHO05D007299 1.2e-145 520.4 395 65.3
arahy.Tifrunner.gnm1.ann1.P0XQ2X Arachis hypogaea HOM05D005667 ORTHO05D007299 1.2e-145 520.4 395 64.8
vmacro14998 Vaccinium macrocarpon HOM05D005667 ORTHO05D007299 1.6e-145 520.0 392 65.1
Hma1.2p1_0209F.1_g088490 Hydrangea macrophylla HOM05D005667 ORTHO05D007299 6.0e-145 518.1 389 65.3
MELO3C017966.2 Cucumis melo HOM05D005667 ORTHO05D007299 1.0e-144 517.3 395 63.5
Ciclev10020175m.g Citrus clementina HOM05D005667 ORTHO05D007299 1.7e-144 516.5 446 59.0
Lalb_Chr04g0259821 Lupinus albus HOM05D005667 ORTHO05D007299 3.9e-144 515.4 391 64.7
TPR.G9636 Trifolium pratense HOM05D005667 ORTHO05D007299 3.9e-144 515.4 389 64.8
TWI59G1070 Tripterygium wilfordii HOM05D005667 ORTHO05D007299 5.6e-143 511.5 397 64.2
CsaV3_4G000700 Cucumis sativus L. HOM05D005667 ORTHO05D007299 7.3e-143 511.1 395 63.0
CiPaw.07G107100 Carya illinoinensis HOM05D005667 ORTHO05D007299 2.8e-142 509.2 390 63.8
Sabra02G0153700 Salix brachista HOM05D005667 ORTHO05D007299 2.8e-142 509.2 422 62.6
Sc05g0004030 Simmondsia chinensis HOM05D005667 ORTHO05D007299 2.8e-142 509.2 394 64.0
Lalb_Chr18g0047071 Lupinus albus HOM05D005667 ORTHO05D007299 1.1e-141 507.3 396 64.1
Potri.002G205600 Populus trichocarpa HOM05D005667 ORTHO05D007299 1.4e-141 506.9 395 65.3
Hund18138 Selenicereus undatus HOM05D005667 ORTHO05D007299 1.4e-141 506.9 392 64.5
Sed0014922 Sechium edule HOM05D005667 ORTHO05D007299 3.1e-141 505.8 388 62.6
DCAR_005798 Daucus carota HOM05D005667 ORTHO05D007299 5.8e-140 501.5 374 64.7
Nitab4.5_0002469g0040 Nicotiana tabacum HOM05D005667 ORTHO05D007299 9.8e-140 500.7 391 61.9
Sopen09g029820 Solanum pennellii HOM05D005667 ORTHO05D007299 3.7e-139 498.8 390 62.1
Solyc09g075000.3 Solanum lycopersicum HOM05D005667 ORTHO05D007299 1.4e-138 496.9 390 61.5
FAN20G0834 Fragaria x ananassa HOM05D005667 ORTHO05D007299 4.1e-138 495.4 393 62.3
HanXRQChr04g0118041 Helianthus annuus HOM05D005667 ORTHO05D007299 4.1e-138 495.4 392 63.0
Eucgr.K03468 Eucalyptus grandis HOM05D005667 ORTHO05D007299 5.4e-138 495.0 375 64.5
Ah.08g213150 Amaranthus hybridus HOM05D005667 ORTHO05D007299 1.6e-137 493.4 399 63.4
CSS0019258 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 3.5e-137 492.3 389 62.7
PGSC0003DMG400011397 Solanum tuberosum HOM05D005667 ORTHO05D007299 4.6e-137 491.9 390 61.3
Manes.01G217700 Manihot esculenta HOM05D005667 ORTHO05D007299 2.3e-136 489.6 394 63.5
Prupe.8G259400 Prunus persica HOM05D005667 ORTHO05D007299 3.9e-136 488.8 344 67.7
MSTRG.21625 Avicennia marina HOM05D005667 ORTHO05D007299 1.1e-135 487.3 392 62.8
Lsat_1_v5_gn_8_53441 Lactuca sativa HOM05D005667 ORTHO05D007299 2.1e-134 483.0 402 61.7
SGA_v2.0_scaffold2G01401 Striga asiatica HOM05D005667 ORTHO05D007299 6.2e-134 481.5 392 61.5
Aqoxy2G02973 Aquilegia oxysepala HOM05D005667 ORTHO05D007299 2.3e-133 479.6 401 61.1
BcaB06g29495 Brassica carinata HOM05D005667 ORTHO05D007299 2.3e-133 479.6 274 82.5
GSVIVG01027987001 Vitis vinifera HOM05D005667 ORTHO05D007299 3.1e-133 479.2 342 67.0
Potri.014G130600 Populus trichocarpa HOM05D005667 ORTHO05D007299 4.4e-132 475.3 392 62.0
Cc01_g20730 Coffea canephora HOM05D005667 ORTHO05D007299 1.1e-130 470.7 443 56.2
Nitab4.5_0005515g0060 Nicotiana tabacum HOM05D005667 ORTHO05D007299 1.1e-130 470.7 391 60.4
Gohir.D12G135100 Gossypium hirsutum HOM05D005667 ORTHO05D007299 1.6e-129 466.8 395 59.7
Lj1C26T7 Lonicera japonica HOM05D005667 ORTHO05D007299 1.7e-128 463.4 313 69.3
Migut.D00204 Erythranthe guttata HOM05D005667 ORTHO05D007299 2.3e-128 463.0 394 59.4
CDE08G0318 Ceratophyllum demersum HOM05D005667 ORTHO05D007299 5.1e-128 461.8 382 57.3
AUR62033112 Chenopodium quinoa HOM05D005667 ORTHO05D007299 2.5e-127 459.5 392 58.9
PGR044G1684 Punica granatum HOM05D005667 ORTHO05D007299 7.3e-127 458.0 396 58.3
Gohir.A12G131200 Gossypium hirsutum HOM05D005667 ORTHO05D007299 9.6e-127 457.6 395 58.7
PSO210G4429 Papaver somniferum HOM05D005667 ORTHO05D007299 9.6e-127 457.6 379 59.9
Gorai.008G146100 Gossypium raimondii HOM05D005667 ORTHO05D007299 1.4e-125 453.8 393 58.8
PSO170G6061 Papaver somniferum HOM05D005667 ORTHO05D007299 3.1e-125 452.6 391 58.3
SalBow3G0511 Salvia bowleyana HOM05D005667 ORTHO05D007299 4.0e-125 452.2 373 61.1
AUR62008656 Chenopodium quinoa HOM05D005667 ORTHO05D007299 1.5e-124 450.3 392 58.7
Sabra14G0097200 Salix brachista HOM05D005667 ORTHO05D007299 2.0e-124 449.9 394 59.4
ATR0796G332 Amborella trichopoda HOM05D005667 ORTHO05D007299 7.6e-124 448.0 388 56.4
ClCG10G010830 Citrullus lanatus HOM05D005667 ORTHO05D007299 1.6e-121 440.3 395 57.7
Peaxi162Scf00001g00492 Petunia axillaris HOM05D005667 ORTHO05D007299 2.1e-121 439.9 344 61.0
EL10Ac7g17451 Beta vulgaris HOM05D005667 ORTHO05D007299 1.0e-120 437.6 388 58.5
HPP92_027132 Vanilla planifolia HOM05D005667 ORTHO05D007299 2.5e-119 433.0 374 57.8
Hma1.2p1_0209F.1_g088500 Hydrangea macrophylla HOM05D005667 ORTHO05D007299 9.6e-119 431.0 429 53.1
SHI15190 Sapria himalayana HOM05D005667 ORTHO05D007299 2.4e-117 426.4 372 58.1
Rhsim01G0284200 Rhododendron simsii HOM05D005667 ORTHO05D007299 9.0e-117 424.5 402 54.7
CSS0024566 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 3.2e-114 416.0 394 56.6
Actinidia24829 Actinidia chinensis HOM05D005667 ORTHO05D007299 1.2e-113 414.1 388 55.4
unitig_0.g1174 Utricularia gibba HOM05D005667 ORTHO05D007299 1.6e-113 413.7 422 52.1
CSS0050073 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 2.1e-113 413.3 394 56.3
Sc05g0001380 Simmondsia chinensis HOM05D005667 ORTHO05D007299 1.3e-110 404.1 302 63.9
ECA236G1571 Erigeron canadensis HOM05D005667 ORTHO05D007299 2.4e-109 399.8 343 59.2
SEGI_23788 Sequoiadendron giganteum HOM05D005667 ORTHO05D007299 1.2e-108 397.5 389 53.2
Cpa.g.sc9.222 Carica papaya HOM05D005667 ORTHO05D007299 8.7e-104 381.3 292 65.4
Dinv19706 Davidia involucrata HOM05D005667 ORTHO05D007299 5.8e-100 368.6 268 66.4
Medtr8g058557 Medicago truncatula HOM05D005667 ORTHO05D007299 2.8e-94 349.7 235 70.2
Pp3c2_26100 Physcomitrium patens HOM05D005667 ORTHO05D007299 1.1e-85 321.2 380 46.3
Pp3c11_14960 Physcomitrium patens HOM05D005667 ORTHO05D007299 1.0e-83 314.7 378 45.0
SMO329G0065 Selaginella moellendorffii HOM05D005667 ORTHO05D007299 3.0e-80 303.1 347 45.8
Mapoly0153s0027 Marchantia polymorpha HOM05D005667 ORTHO05D007299 1.5e-79 300.8 377 43.2
HPP92_021590 Vanilla planifolia HOM05D005667 ORTHO05D007299 3.4e-76 289.7 231 58.9
Pp3c11_15090 Physcomitrium patens HOM05D005667 ORTHO05D007299 8.2e-70 268.5 298 46.3
RcHm_v2.0_Chr6g0293741 Rosa chinensis HOM05D005667 ORTHO05D007299 8.0e-65 251.9 198 61.1
Zm00001eb157470 Zea mays HOM05D005667 ORTHO05D007299 8.8e-64 248.4 207 55.6
AagrBONN_evm.TU.Sc2ySwM_344.2785 Anthoceros agrestis HOM05D005667 ORTHO05D007299 7.2e-58 228.8 236 46.2
Oeu011452.2 Olea europaea HOM05D005667 ORTHO05D007299 9.4e-58 228.4 174 67.2
Nn3g21456 Nelumbo nucifera HOM05D005667 ORTHO05D007299 9.1e-53 211.8 317 41.0
Os12g0294100 Oryza sativa ssp. japonica HOM05D005667 ORTHO05D007299 4.2e-50 203.0 214 50.0
BcaC02g06993 Brassica carinata HOM05D005667 ORTHO05D007299 2.8e-46 190.3 125 77.6
Cre03.g178050 Chlamydomonas reinhardtii HOM05D005667 ORTHO05D007299 4.9e-46 189.5 350 36.3
Actinidia21054 Actinidia chinensis HOM05D005667 ORTHO05D007299 6.6e-43 179.1 153 57.5
PRCOL_00003266 Prasinoderma coloniale HOM05D005667 ORTHO05D007299 1.4e-37 161.4 363 33.3
RcHm_v2.0_Chr6g0293751 Rosa chinensis HOM05D005667 ORTHO05D007299 1.4e-37 161.4 139 64.0
MCO09G319 Micromonas commoda HOM05D005667 ORTHO05D007299 1.2e-36 158.3 341 34.0
Migut.D00125 Erythranthe guttata HOM05D005667 ORTHO05D007299 1.5e-26 124.8 179 40.8
CBR_g34279 Chara braunii HOM05D005667 ORTHO05D007299 4.7e-25 119.8 161 41.6
Migut.G00109 Erythranthe guttata HOM05D005667 ORTHO05D007299 2.5e-18 97.4 166 35.5
CBR_g31107 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-11 74.7 138 35.5
CBR_g31109 Chara braunii HOM05D000019 ORTHO05D000048 6.6e-11 72.8 69 44.9
Actinidia13473 Actinidia chinensis HOM05D005667 ORTHO05D000474 2.6e-07 60.8 68 47.1
CSS0009653 Camellia sinensis var. sinensis HOM05D004669 ORTHO05D005767 2.9e-06 57.4 215 23.7
C08p17210 Brassica napus HOM05D004669 ORTHO05D005767 3.8e-06 57.0 215 24.2
BolC8t49350H Brassica oleracea HOM05D004669 ORTHO05D005767 3.8e-06 57.0 215 24.2
SalBow2G0244 Salvia bowleyana HOM05D004669 ORTHO05D005767 3.8e-06 57.0 219 23.7
arahy.Tifrunner.gnm1.ann1.DS860L Arachis hypogaea HOM05D004669 ORTHO05D005767 6.4e-06 56.2 220 23.2
arahy.Tifrunner.gnm1.ann1.L4R828 Arachis hypogaea HOM05D004669 ORTHO05D005767 6.4e-06 56.2 220 23.2
A06p11500 Brassica napus HOM05D000746 ORTHO05D005767 6.4e-06 56.2 215 23.7
C05p13620 Brassica napus HOM05D004669 ORTHO05D005767 6.4e-06 56.2 215 23.7
BolC5t30098H Brassica oleracea HOM05D004669 ORTHO05D005767 6.4e-06 56.2 215 23.7
BraA06t24327Z Brassica rapa HOM05D000746 ORTHO05D005767 6.4e-06 56.2 215 23.7
BcaB03g13059 Brassica carinata HOM05D004669 ORTHO05D005767 8.4e-06 55.8 215 23.7
A08p31560 Brassica napus HOM05D004669 ORTHO05D005767 8.4e-06 55.8 215 23.7
BraA08t35078Z Brassica rapa HOM05D004669 ORTHO05D005767 8.4e-06 55.8 215 23.7


User provided reference genes

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