Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 2.2e-307 1058.1 540 100.0
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 1.4e-301 1038.9 540 97.4
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 1.5e-295 1018.8 540 95.7
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 6.7e-288 993.4 540 93.0
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 9.1e-285 983.0 541 92.1
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 2.0e-284 981.9 541 92.6
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 3.8e-283 977.6 541 91.9
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 3.8e-283 977.6 541 91.9
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 6.5e-283 976.9 541 91.5
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 1.0e-275 953.0 540 89.8
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.5e-255 885.9 540 81.5
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 9.8e-255 883.2 541 84.8
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 2.8e-249 865.1 544 80.3
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 7.1e-221 770.8 550 71.1
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 1.2e-220 770.0 546 72.5
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 3.5e-220 768.5 546 71.2
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 3.5e-220 768.5 548 71.2
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 3.0e-219 765.4 532 72.6
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 3.9e-219 765.0 532 72.9
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 5.6e-218 761.1 545 71.6
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 1.2e-217 760.0 544 72.1
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 1.2e-217 760.0 533 73.9
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 1.6e-217 759.6 535 71.4
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 2.4e-216 755.7 545 71.6
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 2.4e-216 755.7 532 73.5
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 5.2e-216 754.6 535 70.8
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 6.8e-216 754.2 543 71.6
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 8.9e-216 753.8 541 70.4
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 1.2e-215 753.4 528 71.2
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 2.6e-215 752.3 544 71.3
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 4.4e-215 751.5 545 71.6
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 4.4e-215 751.5 539 71.4
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 5.8e-215 751.1 530 71.9
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 5.8e-215 751.1 545 70.6
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 5.8e-215 751.1 532 72.2
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 1.3e-214 750.0 545 70.6
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 1.7e-214 749.6 530 71.5
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.2e-214 749.2 545 70.8
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 4.9e-214 748.0 533 72.0
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 4.9e-214 748.0 531 71.4
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 8.4e-214 747.3 545 70.6
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 1.1e-213 746.9 533 71.7
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 1.1e-213 746.9 529 70.5
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 1.9e-213 746.1 546 70.3
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 5.4e-213 744.6 553 69.8
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 7.1e-213 744.2 531 72.7
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 1.6e-212 743.0 526 71.9
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 1.7e-211 739.6 546 69.6
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 3.0e-211 738.8 523 72.3
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 3.0e-211 738.8 529 71.3
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 3.9e-211 738.4 528 72.3
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 5.1e-211 738.0 528 71.6
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 5.1e-211 738.0 533 71.1
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 6.6e-211 737.6 532 70.7
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.5e-210 736.5 532 71.4
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 1.5e-210 736.5 545 69.7
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 2.5e-210 735.7 529 72.2
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 2.5e-210 735.7 545 69.9
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 7.3e-210 734.2 546 68.9
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 1.2e-209 733.4 541 68.6
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 1.1e-208 730.3 527 69.6
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 3.1e-208 728.8 528 72.0
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 4.0e-208 728.4 527 69.3
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 9.0e-208 727.2 527 69.4
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 2.0e-207 726.1 531 70.8
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 2.6e-207 725.7 581 67.3
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 2.6e-207 725.7 533 69.6
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 9.9e-207 723.8 532 69.5
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 4.9e-206 721.5 528 68.8
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 8.4e-206 720.7 546 69.4
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 8.4e-206 720.7 532 70.1
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 1.6e-204 716.5 521 69.3
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 2.7e-204 715.7 525 70.3
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 3.5e-204 715.3 527 69.3
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 3.5e-204 715.3 522 69.3
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 1.0e-203 713.8 560 67.0
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 1.1e-202 710.3 589 64.0
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 1.8e-200 703.0 493 74.0
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 5.3e-200 701.4 564 65.6
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 3.4e-199 698.7 523 69.4
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 7.6e-199 697.6 535 67.1
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 7.6e-199 697.6 540 67.2
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 1.7e-198 696.4 542 67.0
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 1.1e-197 693.7 536 64.2
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 1.9e-197 693.0 521 67.9
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 9.3e-197 690.6 559 65.7
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 1.3e-195 686.8 527 68.1
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 8.7e-195 684.1 528 65.7
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.6e-193 679.9 488 71.9
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 3.1e-192 675.6 497 70.6
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 4.2e-189 665.2 476 71.8
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 4.3e-186 655.2 489 69.3
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 2.2e-177 626.3 535 62.1
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 1.2e-172 610.5 553 60.4
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 3.9e-171 605.5 589 57.9
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 9.7e-170 600.9 524 62.4
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 3.2e-165 585.9 439 68.6
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 3.9e-163 578.9 411 70.1
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 2.0e-159 566.6 410 71.2
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 1.5e-117 427.6 547 46.8
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.6e-116 424.1 533 49.2
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 6.8e-115 418.7 527 44.0
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 4.1e-112 409.5 354 63.3
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 1.9e-109 400.6 546 41.9
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 4.3e-109 399.4 533 41.8
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 2.1e-103 380.6 282 69.9
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 4.6e-103 379.4 554 40.6
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 3.9e-102 376.3 539 39.1
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 1.9e-101 374.0 266 72.6
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 3.6e-100 369.8 274 68.2
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 1.4e-99 367.9 297 65.0
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 8.4e-97 358.6 327 59.6
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 5.6e-85 319.3 424 44.1
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 5.6e-85 319.3 190 81.6
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 5.6e-77 292.7 632 32.8
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 6.9e-67 259.2 317 49.2
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 2.5e-64 250.8 227 59.0
SEGI_24798 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 2.0e-53 214.5 162 69.1
EL10Ac3g06395 Beta vulgaris HOM05D005743 ORTHO05D007031 2.8e-52 210.7 152 67.1
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.4e-51 208.4 289 45.3
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 5.9e-50 203.0 702 27.1
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 7.2e-48 196.1 127 74.8
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 4.4e-45 186.8 123 74.8
SEGI_13510 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 2.2e-41 174.5 115 72.2
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 3.3e-37 160.6 131 61.1
Actinidia21044 Actinidia chinensis HOM05D005743 ORTHO05D007031 1.8e-30 138.3 115 56.5
Nitab4.5_0002433g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 3.1e-27 127.5 97 63.9
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 2.7e-26 124.4 184 38.6
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 1.1e-24 119.0 76 77.6
ATR0706G260 Amborella trichopoda HOM05D005743 ORTHO05D007031 2.8e-15 87.8 51 84.3
SEGI_31813 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 3.6e-15 87.4 100 50.0
SEGI_40223 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 1.4e-14 85.5 105 51.4
BcaC02g12599 Brassica carinata HOM05D005743 ORTHO05D007031 8.6e-09 66.2 37 89.2
Medtr7g112660 Medicago truncatula HOM05D005743 ORTHO05D007031 3.3e-08 64.3 52 67.3
PRCOL_00000753 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 5.6e-08 63.5 159 29.6
MCO02G055 Micromonas commoda HOM05D018879 ORTHO05D018932 5.2e-06 57.0 188 29.8
Medtr3g062620 Medicago truncatula HOM05D005743 ORTHO05D007031 6.8e-06 56.6 40 72.5


User provided reference genes

Program Settings