Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G46070 Arabidopsis lyrata HOM05D012720 ORTHO05D007257 1.3e-140 503.1 253 100.0
AT2G46640 Arabidopsis thaliana HOM05D012720 ORTHO05D007257 3.2e-115 418.7 288 79.9
CARHR141980 Cardamine hirsuta HOM05D012720 ORTHO05D007257 2.3e-105 386.0 282 74.8
Thhalv10001576m.g Eutrema salsugineum HOM05D012720 ORTHO05D007257 1.6e-95 353.2 288 69.4
Carub.0004s2935 Capsella rubella HOM05D012720 ORTHO05D007257 6.9e-94 347.8 266 73.3
Sp4g28690 Schrenkiella parvula HOM05D012720 ORTHO05D007257 5.0e-92 341.7 295 67.8
BcaC02g12658 Brassica carinata HOM05D012720 ORTHO05D007257 3.9e-89 332.0 295 65.8
BcaB01g03200 Brassica carinata HOM05D012720 ORTHO05D007257 1.6e-87 326.6 292 62.3
BolC4t21784H Brassica oleracea HOM05D012720 ORTHO05D007257 7.2e-83 311.2 288 64.6
A05p01150 Brassica napus HOM05D012720 ORTHO05D007257 1.7e-79 300.1 288 62.8
BraA05t19115Z Brassica rapa HOM05D012720 ORTHO05D007257 1.1e-78 297.4 288 62.2
C04p01310 Brassica napus HOM05D012720 ORTHO05D007257 1.1e-75 287.3 282 62.1
BcaC02g07047 Brassica carinata HOM05D012720 ORTHO05D007257 3.2e-75 285.8 275 62.5
Aa31LG1G28040 Aethionema arabicum HOM05D007199 ORTHO05D007257 2.8e-63 246.1 285 56.5
THA.LOC104802086 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 3.8e-44 182.6 292 46.9
THA.LOC104817388 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 6.0e-37 158.7 297 46.1
Ciclev10024292m.g Citrus clementina HOM05D007199 ORTHO05D007257 1.5e-24 117.5 264 35.2
Cpa.g.sc144.10 Carica papaya HOM05D007199 ORTHO05D007257 1.1e-22 111.3 303 33.0
Gohir.D11G103900 Gossypium hirsutum HOM05D007199 ORTHO05D007257 9.2e-22 108.2 290 33.8
Gorai.007G111200 Gossypium raimondii HOM05D007199 ORTHO05D007257 2.7e-21 106.7 290 33.4
Atru.chr5.734 Acer truncatum HOM05D007199 ORTHO05D007257 2.3e-20 103.6 302 32.1
Gohir.A11G099400 Gossypium hirsutum HOM05D007199 ORTHO05D007257 6.6e-20 102.1 290 31.7
CiPaw.02G043300 Carya illinoinensis HOM05D007199 ORTHO05D007257 1.2e-18 97.8 273 34.8
Duzib138G1694 Durio zibethinus HOM05D007199 ORTHO05D007257 1.2e-18 97.8 284 31.3
Potri.014G102600 Populus trichocarpa HOM05D007199 ORTHO05D007257 4.7e-18 95.9 262 34.4
Gorai.004G150000 Gossypium raimondii HOM05D007199 ORTHO05D007257 6.2e-18 95.5 241 34.9
Gohir.D08G145100 Gossypium hirsutum HOM05D007199 ORTHO05D007257 1.4e-17 94.4 241 34.9
Gohir.A08G124000 Gossypium hirsutum HOM05D007199 ORTHO05D007257 3.1e-17 93.2 242 34.3
Thecc.01G336800 Theobroma cacao HOM05D007199 ORTHO05D007257 4.0e-17 92.8 260 33.5
Medtr8g027100 Medicago truncatula HOM05D007199 ORTHO05D007257 6.8e-17 92.0 282 33.3
Haze_15700 Corylus avellana HOM05D007199 ORTHO05D007257 8.9e-17 91.7 288 34.0
TWI14G0585 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 2.6e-16 90.1 301 31.2
Dinv32625 Davidia involucrata HOM05D007199 ORTHO05D007257 4.4e-16 89.4 288 30.9
FAN10G2445 Fragaria x ananassa HOM05D007199 ORTHO05D007257 4.4e-16 89.4 298 31.2
FAN10G3440 Fragaria x ananassa HOM05D007199 ORTHO05D007257 4.4e-16 89.4 298 31.2
FvH4_7g17280 Fragaria vesca HOM05D007199 ORTHO05D007257 9.9e-16 88.2 292 30.5
FAN03G0194 Fragaria x ananassa HOM05D007199 ORTHO05D007257 9.9e-16 88.2 298 31.2
Nitab4.5_0002638g0020 Nicotiana tabacum HOM05D007199 ORTHO05D007257 9.9e-16 88.2 246 30.5
Ca_23498_v3 Cicer arietinum L. HOM05D007199 ORTHO05D007257 1.3e-15 87.8 270 31.9
FAN06G3172 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.3e-15 87.8 292 29.8
FAN01G2057 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.7e-15 87.4 298 30.9
Potri.002G175300 Populus trichocarpa HOM05D007199 ORTHO05D007257 2.2e-15 87.0 259 32.0
Lalb_Chr15g0076391 Lupinus albus HOM05D007199 ORTHO05D007257 6.4e-15 85.5 267 31.8
PSO782G1188 Papaver somniferum HOM05D007199 ORTHO05D007257 8.4e-15 85.1 261 33.0
Phvul.010G116850 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 1.1e-14 84.7 260 31.2
Phvul.010G116900 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 1.1e-14 84.7 260 31.2
Psat4g216200 Pisum sativum HOM05D007199 ORTHO05D007257 1.9e-14 84.0 277 29.6
Prupe.2G194000 Prunus persica HOM05D007199 ORTHO05D007257 4.1e-14 82.8 279 32.3
Solyc10g009320.3 Solanum lycopersicum HOM05D007199 ORTHO05D007257 2.1e-13 80.5 255 30.2
TPR.G15900 Trifolium pratense HOM05D007199 ORTHO05D007257 2.1e-13 80.5 272 32.0
RcHm_v2.0_Chr1g0360641 Rosa chinensis HOM05D007199 ORTHO05D007257 2.7e-13 80.1 288 31.2
QL08p046296 Quercus lobata HOM05D007199 ORTHO05D007257 4.6e-13 79.3 273 30.0
VMungo0331G0932 Vigna mungo HOM05D007199 ORTHO05D007257 7.8e-13 78.6 268 31.7
TAR629G0242 Trochodendron aralioides HOM05D007199 ORTHO05D007257 1.3e-12 77.8 268 31.3
Glyma.07G052500 Glycine max HOM05D007199 ORTHO05D007257 2.3e-12 77.0 273 30.8
TWI23G0381 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 2.3e-12 77.0 273 30.0
CsaV3_6G008960 Cucumis sativus L. HOM05D007199 ORTHO05D007257 3.9e-12 76.3 262 30.5
MELO3C022248.2 Cucumis melo HOM05D007199 ORTHO05D007257 5.1e-12 75.9 256 30.5
Manes.05G019000 Manihot esculenta HOM05D007199 ORTHO05D007257 5.1e-12 75.9 282 30.1
MD07G1155200 Malus domestica HOM05D007199 ORTHO05D007257 6.6e-12 75.5 285 30.2
Nn1g00376 Nelumbo nucifera HOM05D007199 ORTHO05D007257 1.1e-11 74.7 277 30.3
Glyma.16G021400 Glycine max HOM05D007199 ORTHO05D007257 1.5e-11 74.3 277 30.0
Lj3g0002992 Lotus japonicus HOM05D007199 ORTHO05D007257 1.9e-11 73.9 299 27.4
Dinv34240 Davidia involucrata HOM05D007199 ORTHO05D007257 4.3e-11 72.8 284 28.9
TAR375G0146 Trochodendron aralioides HOM05D007199 ORTHO05D007257 5.6e-11 72.4 269 31.2
Hma1.2p1_0309F.1_g120450 Hydrangea macrophylla HOM05D007199 ORTHO05D007257 7.3e-11 72.0 316 28.8
Sed0010537 Sechium edule HOM05D007199 ORTHO05D007257 1.2e-10 71.2 267 28.5
Eucgr.E00024 Eucalyptus grandis HOM05D007199 ORTHO05D007257 1.6e-10 70.9 266 31.2
GSVIVG01027402001 Vitis vinifera HOM05D007199 ORTHO05D007257 1.6e-10 70.9 273 29.7
CiPaw.01G079500 Carya illinoinensis HOM05D007199 ORTHO05D007257 2.1e-10 70.5 294 29.3
Duzib133G0933 Durio zibethinus HOM05D007199 ORTHO05D007257 2.1e-10 70.5 295 28.5
MD00G1035800 Malus domestica HOM05D007199 ORTHO05D007257 2.1e-10 70.5 284 31.0
Sopen10g005110 Solanum pennellii HOM05D007199 ORTHO05D007257 3.6e-10 69.7 257 30.0
ATR0620G133 Amborella trichopoda HOM05D007199 ORTHO05D007257 4.7e-10 69.3 239 30.5
Lalb_Chr10g0100741 Lupinus albus HOM05D007199 ORTHO05D007257 6.2e-10 68.9 278 29.1
PGSC0003DMG400005529 Solanum tuberosum HOM05D007199 ORTHO05D007257 1.4e-09 67.8 256 29.7
HanXRQChr04g0120361 Helianthus annuus HOM05D007199 ORTHO05D007257 1.8e-09 67.4 261 29.1
Actinidia28100 Actinidia chinensis HOM05D007199 ORTHO05D007257 2.4e-09 67.0 246 31.3
Gohir.A12G114200 Gossypium hirsutum HOM05D007199 ORTHO05D007257 2.4e-09 67.0 264 30.3
Manes.01G254801 Manihot esculenta HOM05D007199 ORTHO05D007257 2.4e-09 67.0 285 27.7
ECA236G3069 Erigeron canadensis HOM05D007199 ORTHO05D007257 5.2e-09 65.9 279 27.2
Nitab4.5_0014168g0010 Nicotiana tabacum HOM05D007199 ORTHO05D007257 5.2e-09 65.9 253 30.4
Sabra14G0075600 Salix brachista HOM05D007199 ORTHO05D007257 9.0e-09 65.1 85 45.9
Aqoxy5G04262 Aquilegia oxysepala HOM05D007199 ORTHO05D007257 2.0e-08 63.9 253 31.2
AUR62008640 Chenopodium quinoa HOM05D021513 ORTHO05D007257 2.0e-08 63.9 234 29.5
CSS0043385 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 2.6e-08 63.5 247 28.7
CANSAT56G1498 Cannabis sativa HOM05D007199 ORTHO05D007257 4.4e-08 62.8 241 31.5
Peaxi162Scf00087g00199 Petunia axillaris HOM05D007199 ORTHO05D007257 7.6e-08 62.0 255 29.8
CDE11G0583 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 9.9e-08 61.6 273 27.5
Rhsim01G0176600 Rhododendron simsii HOM05D007199 ORTHO05D007257 1.7e-07 60.8 257 29.6
DCAR_002988 Daucus carota HOM05D007199 ORTHO05D007257 2.9e-07 60.1 260 29.2
Ah.15g093270 Amaranthus hybridus HOM05D021513 ORTHO05D007257 3.8e-07 59.7 195 29.2
Sopen01g040020 Solanum pennellii HOM05D007199 ORTHO05D007257 4.9e-07 59.3 249 26.1
EL10Ac7g17504 Beta vulgaris HOM05D021513 ORTHO05D007257 6.4e-07 58.9 213 29.6
AUR62033124 Chenopodium quinoa HOM05D021513 ORTHO05D007257 6.4e-07 58.9 230 26.5
Solyc01g096260.4 Solanum lycopersicum HOM05D007199 ORTHO05D007257 1.1e-06 58.2 251 25.9
arahy.Tifrunner.gnm1.ann1.GEK5Z0 Arachis hypogaea HOM05D007199 ORTHO05D007257 1.4e-06 57.8 217 27.6
arahy.Tifrunner.gnm1.ann1.WJU08E Arachis hypogaea HOM05D007199 ORTHO05D007257 1.4e-06 57.8 220 28.6
arahy.Tifrunner.gnm1.ann1.A7IBVM Arachis hypogaea HOM05D007199 ORTHO05D007257 5.4e-06 55.8 307 23.5
Lj9C602T4 Lonicera japonica HOM05D007199 ORTHO05D007257 7.1e-06 55.5 173 30.6


User provided reference genes

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