Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G46060 Arabidopsis lyrata HOM05D004242 ORTHO05D004349 1.8e-133 479.9 386 100.0
AT2G46630 Arabidopsis thaliana HOM05D004242 ORTHO05D004349 7.3e-111 404.8 395 85.8
BcaC02g12659 Brassica carinata HOM05D004242 ORTHO05D004349 3.5e-89 332.8 391 70.3
Thhalv10001731m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 8.1e-86 321.6 390 75.6
A04p34530 Brassica napus HOM05D004242 ORTHO05D004349 5.2e-85 318.9 394 72.6
A05p01160 Brassica napus HOM05D004242 ORTHO05D004349 2.0e-84 317.0 412 70.1
BraA05t19116Z Brassica rapa HOM05D004242 ORTHO05D004349 8.4e-83 311.6 412 67.0
C04p72290 Brassica napus HOM05D004242 ORTHO05D004349 3.0e-80 303.1 394 70.1
Sp4g28680 Schrenkiella parvula HOM05D004242 ORTHO05D004349 5.1e-80 302.4 391 74.7
BolC4t28717H Brassica oleracea HOM05D004242 ORTHO05D004349 8.7e-80 301.6 395 69.6
CARHR141970 Cardamine hirsuta HOM05D004242 ORTHO05D004349 9.6e-79 298.1 386 75.1
BolC4t21785H Brassica oleracea HOM05D004242 ORTHO05D004349 4.0e-77 292.7 404 69.6
C04p01320 Brassica napus HOM05D004242 ORTHO05D004349 9.0e-77 291.6 404 69.6
BcaC02g12660 Brassica carinata HOM05D004242 ORTHO05D004349 3.4e-76 289.7 262 75.2
BraA04t18910Z Brassica rapa HOM05D004242 ORTHO05D004349 4.5e-76 289.3 394 72.3
Carub.0004s2934 Capsella rubella HOM05D004242 ORTHO05D004349 5.8e-76 288.9 405 76.0
BcaC02g07046 Brassica carinata HOM05D004242 ORTHO05D004349 4.3e-55 219.5 405 66.9
Aa31LG1G28030 Aethionema arabicum HOM05D004242 ORTHO05D004349 1.5e-36 157.9 262 42.4
THA.LOC104817612 Tarenaya hassleriana HOM05D004242 ORTHO05D004349 2.7e-33 147.1 389 53.0
Thhalv10006210m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 5.3e-21 106.3 224 40.6
Cfa003761 Carpinus fangiana HOM05D004242 ORTHO05D004349 9.1e-21 105.5 213 42.3
Haze_15699 Corylus avellana HOM05D004242 ORTHO05D004349 1.6e-20 104.8 217 44.2
Sp5g01480 Schrenkiella parvula HOM05D004242 ORTHO05D004349 2.7e-20 104.0 221 38.5
FAN03G1939 Fragaria x ananassa HOM05D004242 ORTHO05D004349 4.5e-20 103.2 246 34.6
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 7.7e-20 102.4 146 46.6
FAN22G2040 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.7e-19 101.3 249 32.5
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 5.0e-19 99.8 145 42.8
FAN01G2496 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.9e-18 97.8 245 33.9
FAN17G2081 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.9e-18 97.8 249 33.3
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 2.5e-18 97.4 170 41.8
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 5.5e-18 96.3 239 35.6
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 5.5e-18 96.3 239 35.6
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 7.2e-18 95.9 237 37.1
FAN10G0542 Fragaria x ananassa HOM05D004242 ORTHO05D004349 7.2e-18 95.9 248 34.7
FvH4_7g17260 Fragaria vesca HOM05D004242 ORTHO05D004349 9.4e-18 95.5 238 33.2
FAN06G2582 Fragaria x ananassa HOM05D004242 ORTHO05D004349 9.4e-18 95.5 238 33.2
FAN06G4791 Fragaria x ananassa HOM05D004242 ORTHO05D004349 9.4e-18 95.5 238 33.2
RcHm_v2.0_Chr1g0360631 Rosa chinensis HOM05D004242 ORTHO05D004349 9.4e-18 95.5 237 32.5
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 9.4e-18 95.5 224 33.9
BcaC07g42602 Brassica carinata HOM05D004242 ORTHO05D004349 1.6e-17 94.7 199 37.7
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 1.6e-17 94.7 215 34.9
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 2.1e-17 94.4 240 35.8
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 4.7e-17 93.2 155 40.6
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.0e-16 92.0 228 36.0
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 1.4e-16 91.7 213 35.7
FAN10G1700 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.8e-16 91.3 246 34.1
C08p36720 Brassica napus HOM05D004242 ORTHO05D004349 2.3e-16 90.9 217 36.4
BolC8t51254H Brassica oleracea HOM05D004242 ORTHO05D004349 2.3e-16 90.9 217 36.4
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 3.0e-16 90.5 221 33.5
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 4.0e-16 90.1 157 40.8
PGSC0003DMG400007374 Solanum tuberosum HOM05D004242 ORTHO05D004349 5.2e-16 89.7 212 32.1
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 5.2e-16 89.7 252 31.0
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 6.8e-16 89.4 147 40.1
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 8.8e-16 89.0 224 34.8
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 8.8e-16 89.0 239 32.6
A09p53910 Brassica napus HOM05D004242 ORTHO05D004349 1.5e-15 88.2 216 34.7
BraA09t40807Z Brassica rapa HOM05D004242 ORTHO05D004349 1.5e-15 88.2 216 34.7
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 2.6e-15 87.4 217 32.7
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 2.6e-15 87.4 153 41.2
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 5.7e-15 86.3 231 29.9
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 7.5e-15 85.9 199 32.2
FvH4_4g01200 Fragaria vesca HOM05D004242 ORTHO05D004349 9.8e-15 85.5 242 31.8
FAN12G0333 Fragaria x ananassa HOM05D004242 ORTHO05D004349 9.8e-15 85.5 242 31.4
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 9.8e-15 85.5 234 33.8
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 9.8e-15 85.5 206 32.5
Atru.chr5.733 Acer truncatum HOM05D004242 ORTHO05D004349 1.3e-14 85.1 234 43.2
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 1.7e-14 84.7 218 33.9
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 2.2e-14 84.3 237 31.2
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 2.8e-14 84.0 191 33.5
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 2.8e-14 84.0 191 33.5
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 2.8e-14 84.0 147 39.5
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 2.8e-14 84.0 249 36.9
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 6.3e-14 82.8 244 33.2
Gohir.A07G135500 Gossypium hirsutum HOM05D004242 ORTHO05D004349 6.3e-14 82.8 238 32.8
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 6.3e-14 82.8 215 33.0
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 1.4e-13 81.6 230 31.7
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 1.8e-13 81.3 246 33.3
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 2.4e-13 80.9 266 27.1
Gohir.D07G140400 Gossypium hirsutum HOM05D004242 ORTHO05D004349 2.4e-13 80.9 238 32.4
TAR339G0002 Trochodendron aralioides HOM05D004242 ORTHO05D004349 2.4e-13 80.9 223 38.1
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 3.1e-13 80.5 200 34.5
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 3.1e-13 80.5 213 33.3
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 4.1e-13 80.1 236 32.2
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 5.4e-13 79.7 158 37.3
Carub.0005s2862 Capsella rubella HOM05D004242 ORTHO05D004349 5.4e-13 79.7 207 34.8
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 9.1e-13 79.0 197 39.1
Lalb_Chr04g0261391 Lupinus albus HOM05D004242 ORTHO05D004349 9.1e-13 79.0 115 39.1
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 9.1e-13 79.0 152 38.8
Gorai.001G152400 Gossypium raimondii HOM05D004242 ORTHO05D004349 1.2e-12 78.6 236 31.8
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 1.6e-12 78.2 239 33.5
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 2.7e-12 77.4 217 32.7
Prupe.2G193900 Prunus persica HOM05D004242 ORTHO05D004349 2.7e-12 77.4 234 35.5
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 3.5e-12 77.0 143 37.1
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 4.5e-12 76.6 211 31.8
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 7.7e-12 75.9 134 35.8
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 1.0e-11 75.5 191 37.7
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 1.3e-11 75.1 231 31.2
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 2.9e-11 73.9 143 44.1
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 5.0e-11 73.2 243 28.4
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 6.6e-11 72.8 225 29.3
DCAR_002987 Daucus carota HOM05D004242 ORTHO05D004349 1.1e-10 72.0 228 31.6
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 1.5e-10 71.6 155 35.5
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 2.5e-10 70.9 229 33.2
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 3.3e-10 70.5 210 30.5
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 4.2e-10 70.1 210 30.5
ClCG05G000590 Citrullus lanatus HOM05D004242 ORTHO05D004349 7.2e-10 69.3 120 37.5
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 7.2e-10 69.3 215 31.2
CiPaw.02G042800 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.2e-09 68.6 207 29.5
Aqoxy2G02545 Aquilegia oxysepala HOM05D004242 ORTHO05D004349 1.6e-09 68.2 112 58.9
Dinv32623 Davidia involucrata HOM05D004242 ORTHO05D004349 1.6e-09 68.2 120 35.8
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 1.6e-09 68.2 201 31.8
CiPaw.02G043000 Carya illinoinensis HOM05D004242 ORTHO05D004349 2.1e-09 67.8 122 34.4
Sed0022787 Sechium edule HOM05D004242 ORTHO05D004349 3.6e-09 67.0 200 31.5
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 4.7e-09 66.6 200 31.5
CSS0040523 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 8.0e-09 65.9 202 30.7
unitig_8.g4995 Utricularia gibba HOM05D004242 ORTHO05D004349 1.0e-08 65.5 217 28.6
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.8e-08 64.7 110 37.3
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 1.8e-08 64.7 132 31.8
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 4.0e-08 63.5 202 34.2
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 4.0e-08 63.5 388 24.5
ECA236G3302 Erigeron canadensis HOM05D004242 ORTHO05D004349 4.0e-08 63.5 154 45.5
arahy.Tifrunner.gnm1.ann1.6W400J Arachis hypogaea HOM05D004242 ORTHO05D004349 6.8e-08 62.8 141 31.9
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 8.9e-08 62.4 212 29.2
ClCG05G000600 Citrullus lanatus HOM05D004242 ORTHO05D004349 1.2e-07 62.0 117 33.3
GSVIVG01027399001 Vitis vinifera HOM05D004242 ORTHO05D004349 1.2e-07 62.0 211 29.9
CsaV3_6G008950 Cucumis sativus L. HOM05D004242 ORTHO05D004349 1.5e-07 61.6 237 29.5
CDE02G1230 Ceratophyllum demersum HOM05D004242 ORTHO05D004349 2.6e-07 60.8 123 35.8
Sc01g0002380 Simmondsia chinensis HOM05D004242 ORTHO05D004349 2.6e-07 60.8 148 29.7
Phvul.010G116800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 3.4e-07 60.5 123 35.0
arahy.Tifrunner.gnm1.ann1.YBIH8U Arachis hypogaea HOM05D004242 ORTHO05D004349 5.7e-07 59.7 156 30.8
CsaV3_3G007800 Cucumis sativus L. HOM05D004242 ORTHO05D004349 7.5e-07 59.3 214 31.8
Sed0006480 Sechium edule HOM05D004242 ORTHO05D004349 7.5e-07 59.3 215 33.0
Sed0013414 Sechium edule HOM05D004242 ORTHO05D004349 7.5e-07 59.3 125 31.2
ATR0796G195 Amborella trichopoda HOM05D004242 ORTHO05D004349 1.3e-06 58.5 113 34.5
ClCG05G000580 Citrullus lanatus HOM05D004242 ORTHO05D004349 1.7e-06 58.2 201 26.4
MELO3C005996.2 Cucumis melo HOM05D004242 ORTHO05D004349 2.2e-06 57.8 210 30.0
Dinv34239 Davidia involucrata HOM05D004242 ORTHO05D004349 2.8e-06 57.4 110 36.4
Nn4g22396 Nelumbo nucifera HOM05D004242 ORTHO05D004349 4.9e-06 56.6 209 27.3
VMungo0331G0257 Vigna mungo HOM05D004242 ORTHO05D004349 8.3e-06 55.8 200 31.5


User provided reference genes

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