Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G45570 Arabidopsis lyrata HOM05D001114 ORTHO05D000940 2.1e-23 111.3 48 100.0
CARHR246060 Cardamine hirsuta HOM05D001114 ORTHO05D000940 4.0e-19 97.1 49 87.8
A03p65460 Brassica napus HOM05D001114 ORTHO05D000940 3.5e-15 84.0 94 48.9
BraA03t15598Z Brassica rapa HOM05D001114 ORTHO05D000940 3.5e-15 84.0 94 48.9
BcaNung02081 Brassica carinata HOM05D001114 ORTHO05D000940 1.0e-14 82.4 94 47.9
BcaNung05785 Brassica carinata HOM05D001114 ORTHO05D000940 1.0e-14 82.4 94 47.9
BcaNung05786 Brassica carinata HOM05D001114 ORTHO05D000940 1.0e-14 82.4 94 47.9
BcaNung05787 Brassica carinata HOM05D001114 ORTHO05D000940 1.0e-14 82.4 94 47.9
A01p01330 Brassica napus HOM05D001114 ORTHO05D000940 1.0e-14 82.4 94 47.9
C01p01490 Brassica napus HOM05D001114 ORTHO05D000940 1.0e-14 82.4 94 47.9
C07p62560 Brassica napus HOM05D001114 ORTHO05D000940 1.0e-14 82.4 94 47.9
BolC1t00146H Brassica oleracea HOM05D001114 ORTHO05D000940 1.0e-14 82.4 94 47.9
BolC7t46671H Brassica oleracea HOM05D001114 ORTHO05D000940 1.0e-14 82.4 94 47.9
BraA01t00130Z Brassica rapa HOM05D001114 ORTHO05D000940 1.0e-14 82.4 94 47.9
Carub.0007s0259 Capsella rubella HOM05D001114 ORTHO05D000940 1.0e-14 82.4 94 47.9
Sp7g35330 Schrenkiella parvula HOM05D001114 ORTHO05D000940 1.0e-14 82.4 94 47.9
Thhalv10025437m.g Eutrema salsugineum HOM05D001114 ORTHO05D000940 1.3e-14 82.0 93 47.3
Aa31LG6G14580 Aethionema arabicum HOM05D001114 ORTHO05D000940 1.8e-14 81.6 94 46.8
AL7G13090 Arabidopsis lyrata HOM05D001114 ORTHO05D000940 3.9e-14 80.5 94 46.8
AT2G40710 Arabidopsis thaliana HOM05D001114 ORTHO05D000940 3.9e-14 80.5 94 46.8
AT4G37680 Arabidopsis thaliana HOM05D001114 ORTHO05D000940 3.9e-14 80.5 94 46.8
Migut.H00338 Erythranthe guttata HOM05D001114 ORTHO05D000940 7.4e-13 76.3 94 42.6
Cc07_g07200 Coffea canephora HOM05D001114 ORTHO05D000940 2.8e-12 74.3 94 41.5
Cpa.g.sc6.2 Carica papaya HOM05D001114 ORTHO05D000940 3.7e-12 73.9 94 41.5
COL.COLO4_11592 Corchorus olitorius HOM05D001114 ORTHO05D000940 4.8e-12 73.6 94 41.5
Nitab4.5_0003129g0010 Nicotiana tabacum HOM05D001114 ORTHO05D000940 4.8e-12 73.6 94 40.4
MSTRG.2816 Avicennia marina HOM05D001114 ORTHO05D000940 6.2e-12 73.2 94 41.5
Lj4A163T74 Lonicera japonica HOM05D001114 ORTHO05D000940 6.2e-12 73.2 94 41.5
Potri.014G006000 Populus trichocarpa HOM05D001114 ORTHO05D000940 8.1e-12 72.8 93 40.9
THA.LOC104807634 Tarenaya hassleriana HOM05D001114 ORTHO05D000940 8.1e-12 72.8 94 40.4
CDE06G2762 Ceratophyllum demersum HOM05D001114 ORTHO05D000940 1.1e-11 72.4 93 40.9
DCAR_021464 Daucus carota HOM05D001114 ORTHO05D000940 1.1e-11 72.4 94 41.5
Hma1.2p1_0852F.1_g228650 Hydrangea macrophylla HOM05D001114 ORTHO05D000940 1.1e-11 72.4 94 41.5
MBI16_g18974_MAGBIO Magnolia biondii HOM05D001114 ORTHO05D000940 1.1e-11 72.4 94 41.5
Oeu014255.2 Olea europaea HOM05D001114 ORTHO05D000940 1.1e-11 72.4 94 40.4
Potri.007G005800 Populus trichocarpa HOM05D001114 ORTHO05D000940 1.1e-11 72.4 94 41.5
QL06p039421 Quercus lobata HOM05D001114 ORTHO05D000940 1.1e-11 72.4 93 39.8
Duzib187G1244 Durio zibethinus HOM05D001114 ORTHO05D000940 1.4e-11 72.0 94 41.5
Manes.12G115900 Manihot esculenta HOM05D001114 ORTHO05D000940 1.4e-11 72.0 94 40.4
Eucgr.I00694 Eucalyptus grandis HOM05D001114 ORTHO05D000940 1.8e-11 71.6 94 39.4
Peaxi162Scf00548g00226 Petunia axillaris HOM05D001114 ORTHO05D000940 1.8e-11 71.6 94 39.4
Solyc02g092230.3 Solanum lycopersicum HOM05D001114 ORTHO05D000940 1.8e-11 71.6 94 39.4
Sopen02g036800 Solanum pennellii HOM05D001114 ORTHO05D000940 1.8e-11 71.6 94 39.4
Thecc.01G074100 Theobroma cacao HOM05D001114 ORTHO05D000940 1.8e-11 71.6 94 40.4
CANSAT01G0260 Cannabis sativa HOM05D001114 ORTHO05D000940 2.4e-11 71.2 94 39.4
Oeu011984.1 Olea europaea HOM05D001114 ORTHO05D000940 2.4e-11 71.2 94 40.4
PGSC0003DMG400021438 Solanum tuberosum HOM05D001114 ORTHO05D000940 2.4e-11 71.2 94 39.4
Actinidia11976 Actinidia chinensis HOM05D001114 ORTHO05D000940 3.1e-11 70.9 94 40.4
ECA246G4652 Erigeron canadensis HOM05D001114 ORTHO05D000940 4.0e-11 70.5 93 38.7
Manes.13G110400 Manihot esculenta HOM05D001114 ORTHO05D000940 4.0e-11 70.5 94 40.4
EL10Ac1g02366 Beta vulgaris HOM05D001114 ORTHO05D000940 5.3e-11 70.1 94 40.4
Duzib147G0936 Durio zibethinus HOM05D001114 ORTHO05D000940 5.3e-11 70.1 94 40.4
Nitab4.5_0001417g0020 Nicotiana tabacum HOM05D001114 ORTHO05D000940 5.3e-11 70.1 94 38.3
Os03g0232900 Oryza sativa ssp. japonica HOM05D001114 ORTHO05D000940 5.3e-11 70.1 94 38.3
Peaxi162Scf00118g01712 Petunia axillaris HOM05D001114 ORTHO05D000940 5.3e-11 70.1 94 38.3
Sabra14G0005700 Salix brachista HOM05D001114 ORTHO05D000940 5.3e-11 70.1 93 39.8
MSTRG.23664 Avicennia marina HOM05D001114 ORTHO05D000940 6.9e-11 69.7 94 39.4
PSO017G6169 Papaver somniferum HOM05D001114 ORTHO05D000940 6.9e-11 69.7 93 40.9
PSO170G6020 Papaver somniferum HOM05D001114 ORTHO05D000940 6.9e-11 69.7 93 40.9
Atru.chr3.1030 Acer truncatum HOM05D001114 ORTHO05D000940 9.0e-11 69.3 94 39.4
CiPaw.01G003300 Carya illinoinensis HOM05D001114 ORTHO05D000940 9.0e-11 69.3 94 39.4
Haze_15270 Corylus avellana HOM05D001114 ORTHO05D000940 9.0e-11 69.3 94 39.4
DCAR_021463 Daucus carota HOM05D001114 ORTHO05D000940 9.0e-11 69.3 94 40.4
Sc03g0002440 Simmondsia chinensis HOM05D001114 ORTHO05D000940 9.0e-11 69.3 94 38.3
Zm00001eb009430 Zea mays HOM05D001114 ORTHO05D000940 9.0e-11 69.3 94 38.3
Rhsim08G0092900 Rhododendron simsii HOM05D001114 ORTHO05D000940 1.2e-10 68.9 94 37.2
Solyc03g043930.4 Solanum lycopersicum HOM05D001114 ORTHO05D000940 1.2e-10 68.9 94 38.3
Sopen03g007750 Solanum pennellii HOM05D000004 ORTHO05D000940 1.2e-10 68.9 94 38.3
GSVIVG01009324001 Vitis vinifera HOM05D001114 ORTHO05D000940 1.2e-10 68.9 94 41.5
CAN.G1075.47 Capsicum annuum HOM05D001114 ORTHO05D000940 1.5e-10 68.6 94 39.4
Gohir.A11G048700 Gossypium hirsutum HOM05D001114 ORTHO05D000940 1.5e-10 68.6 94 39.4
Gohir.D11G052300 Gossypium hirsutum HOM05D001114 ORTHO05D000940 1.5e-10 68.6 94 39.4
Gorai.007G056700 Gossypium raimondii HOM05D001114 ORTHO05D000940 1.5e-10 68.6 94 39.4
Lalb_Chr05g0213761 Lupinus albus HOM05D001114 ORTHO05D000940 1.5e-10 68.6 94 37.2
PGSC0003DMG400009091 Solanum tuberosum HOM05D001114 ORTHO05D000940 1.5e-10 68.6 94 37.2
TAR381G0510 Trochodendron aralioides HOM05D001114 ORTHO05D000940 1.5e-10 68.6 94 40.4
unitig_52.g17606 Utricularia gibba HOM05D001114 ORTHO05D000940 1.5e-10 68.6 94 39.4
AL7G11550 Arabidopsis lyrata HOM05D001114 ORTHO05D000940 2.0e-10 68.2 95 43.2
Duzib264G0544 Durio zibethinus HOM05D001114 ORTHO05D000940 2.0e-10 68.2 94 40.4
FvH4_1g17920 Fragaria vesca HOM05D001114 ORTHO05D000940 2.0e-10 68.2 94 40.4
FAN19G2658 Fragaria x ananassa HOM05D001114 ORTHO05D000940 2.0e-10 68.2 94 40.4
FAN23G2663 Fragaria x ananassa HOM05D001114 ORTHO05D000940 2.0e-10 68.2 94 40.4
FAN28G1432 Fragaria x ananassa HOM05D001114 ORTHO05D000940 2.0e-10 68.2 94 40.4
Gorai.007G224700 Gossypium raimondii HOM05D001114 ORTHO05D000940 2.0e-10 68.2 94 40.4
Oeu032427.1 Olea europaea HOM05D001114 ORTHO05D000940 2.0e-10 68.2 94 36.2
Actinidia32843 Actinidia chinensis HOM05D001114 ORTHO05D000940 2.6e-10 67.8 94 36.2
MELO3C007646.2 Cucumis melo HOM05D001114 ORTHO05D000940 2.6e-10 67.8 94 38.3
Lalb_Chr16g0378931 Lupinus albus HOM05D001114 ORTHO05D000940 2.6e-10 67.8 94 37.2
CAN.G153.4 Capsicum annuum HOM05D001114 ORTHO05D000940 3.4e-10 67.4 94 37.2
CDE04G2644 Ceratophyllum demersum HOM05D001114 ORTHO05D000940 3.4e-10 67.4 93 38.7
Gohir.A11G213900 Gossypium hirsutum HOM05D001114 ORTHO05D000940 3.4e-10 67.4 94 40.4
Ca_15898_v3 Cicer arietinum L. HOM05D001114 ORTHO05D000940 4.5e-10 67.0 94 37.2
RcHm_v2.0_Chr2g0108351 Rosa chinensis HOM05D001114 ORTHO05D000940 4.5e-10 67.0 94 39.4
VMungo1215G3072 Vigna mungo HOM05D001114 ORTHO05D000940 4.5e-10 67.0 94 37.2
AUR62022467 Chenopodium quinoa HOM05D001114 ORTHO05D000940 5.8e-10 66.6 94 38.3
Glyma.01G194900 Glycine max HOM05D001114 ORTHO05D000940 5.8e-10 66.6 94 37.2
Glyma.11G046900 Glycine max HOM05D001114 ORTHO05D000940 5.8e-10 66.6 94 37.2
Lj2g0017513 Lotus japonicus HOM05D001114 ORTHO05D000940 5.8e-10 66.6 94 36.2
Medtr3g103240 Medicago truncatula HOM05D001114 ORTHO05D000940 5.8e-10 66.6 94 37.2
Nn5g30624 Nelumbo nucifera HOM05D001114 ORTHO05D000940 5.8e-10 66.6 94 39.4
Prupe.6G219200 Prunus persica HOM05D001114 ORTHO05D000940 5.8e-10 66.6 94 37.2
Aqoxy6G02565 Aquilegia oxysepala HOM05D001114 ORTHO05D000940 7.6e-10 66.2 94 38.3
arahy.Tifrunner.gnm1.ann1.ALJH5D Arachis hypogaea HOM05D001114 ORTHO05D000940 7.6e-10 66.2 94 36.2
arahy.Tifrunner.gnm1.ann1.SP0UUF Arachis hypogaea HOM05D001114 ORTHO05D000940 7.6e-10 66.2 94 36.2
arahy.Tifrunner.gnm1.ann1.X02P63 Arachis hypogaea HOM05D001114 ORTHO05D000940 7.6e-10 66.2 94 36.2
Ciclev10001488m.g Citrus clementina HOM05D001114 ORTHO05D000940 7.6e-10 66.2 94 37.2
Ciclev10025731m.g Citrus clementina HOM05D001114 ORTHO05D000940 7.6e-10 66.2 94 39.4
MD15G1298700 Malus domestica HOM05D001114 ORTHO05D000940 7.6e-10 66.2 94 38.3
TWI39G1053 Tripterygium wilfordii HOM05D001114 ORTHO05D000940 7.6e-10 66.2 94 37.2
Phvul.002G010000 Phaseolus vulgaris HOM05D001114 ORTHO05D000940 1.0e-09 65.9 94 36.2
ATR0739G029 Amborella trichopoda HOM05D001114 ORTHO05D000940 1.3e-09 65.5 93 36.6
Gohir.D03G029700 Gossypium hirsutum HOM05D001114 ORTHO05D000940 1.3e-09 65.5 94 38.3
Gorai.003G031300 Gossypium raimondii HOM05D001114 ORTHO05D000940 1.3e-09 65.5 94 38.3
Psat5g037920 Pisum sativum HOM05D000323 ORTHO05D000940 1.3e-09 65.5 94 35.1
GSVIVG01006023001 Vitis vinifera HOM05D001114 ORTHO05D000940 1.3e-09 65.5 94 38.3
CSS0018808 Camellia sinensis var. sinensis HOM05D001114 ORTHO05D000940 1.7e-09 65.1 94 37.2
CSS0049399 Camellia sinensis var. sinensis HOM05D001114 ORTHO05D000940 1.7e-09 65.1 94 37.2
AUR62041659 Chenopodium quinoa HOM05D001114 ORTHO05D000940 1.7e-09 65.1 94 37.2
ClCG01G017680 Citrullus lanatus HOM05D001114 ORTHO05D000940 1.7e-09 65.1 94 38.3
Lsat_1_v5_gn_3_86641 Lactuca sativa HOM05D001114 ORTHO05D000940 1.7e-09 65.1 94 36.2
Psat2g171840 Pisum sativum HOM05D001114 ORTHO05D000940 1.7e-09 65.1 94 36.2
MD02G1187800 Malus domestica HOM05D001114 ORTHO05D000940 2.2e-09 64.7 94 37.2
Ca_24679_v3 Cicer arietinum L. HOM05D001114 ORTHO05D000940 2.9e-09 64.3 94 35.1
Cc06_g10690 Coffea canephora HOM05D001114 ORTHO05D000940 2.9e-09 64.3 94 37.2
Manes.05G182500 Manihot esculenta HOM05D001114 ORTHO05D000940 2.9e-09 64.3 94 38.3
arahy.Tifrunner.gnm1.ann1.L6NNIX Arachis hypogaea HOM05D001114 ORTHO05D000940 3.8e-09 63.9 94 35.1
Gohir.A02G150700 Gossypium hirsutum HOM05D001114 ORTHO05D000940 3.8e-09 63.9 94 37.2
Lj7A109T43 Lonicera japonica HOM05D001114 ORTHO05D000940 3.8e-09 63.9 94 37.2
Medtr5g015270 Medicago truncatula HOM05D001114 ORTHO05D000940 3.8e-09 63.9 94 35.1
Phvul.009G072600 Phaseolus vulgaris HOM05D001114 ORTHO05D000940 3.8e-09 63.9 94 37.2
Sed0013868 Sechium edule HOM05D001114 ORTHO05D000940 3.8e-09 63.9 94 38.3
FAN26G2805 Fragaria x ananassa HOM05D001114 ORTHO05D000940 4.9e-09 63.5 94 38.3
PGR004G0920 Punica granatum HOM05D001114 ORTHO05D000940 4.9e-09 63.5 94 35.1
Hund16408 Selenicereus undatus HOM05D001114 ORTHO05D000940 4.9e-09 63.5 94 36.2
TPR.G9334 Trifolium pratense HOM05D001114 ORTHO05D000940 4.9e-09 63.5 94 35.1
arahy.Tifrunner.gnm1.ann1.0EU6RV Arachis hypogaea HOM05D001114 ORTHO05D000940 6.5e-09 63.2 94 38.3
arahy.Tifrunner.gnm1.ann1.YK8V62 Arachis hypogaea HOM05D001114 ORTHO05D000940 6.5e-09 63.2 94 38.3
Glyma.04G046500 Glycine max HOM05D001114 ORTHO05D000940 6.5e-09 63.2 94 37.2
Glyma.06G047200 Glycine max HOM05D001114 ORTHO05D000940 6.5e-09 63.2 94 37.2
CsaV3_6G044210 Cucumis sativus L. HOM05D001114 ORTHO05D000940 1.1e-08 62.4 91 37.4
Lj4A72T41 Lonicera japonica HOM05D001114 ORTHO05D000940 1.1e-08 62.4 94 37.2
Rhsim10G0126800 Rhododendron simsii HOM05D001114 ORTHO05D000940 1.1e-08 62.4 94 36.2
vmacro18021 Vaccinium macrocarpon HOM05D001114 ORTHO05D000940 1.1e-08 62.4 94 35.1
Ah.05g167040 Amaranthus hybridus HOM05D001114 ORTHO05D000940 1.4e-08 62.0 94 38.3
CSS0030475 Camellia sinensis var. sinensis HOM05D001114 ORTHO05D000940 1.4e-08 62.0 94 36.2
CiPaw.08G050700 Carya illinoinensis HOM05D001114 ORTHO05D000940 2.5e-08 61.2 94 35.1
Lj1g0021795 Lotus japonicus HOM05D001114 ORTHO05D000940 2.5e-08 61.2 94 36.2
Cfa013763 Carpinus fangiana HOM05D001114 ORTHO05D000940 3.2e-08 60.8 94 36.2
Atru.chr13.846 Acer truncatum HOM05D001114 ORTHO05D000940 4.2e-08 60.5 94 35.1
Dinv44945 Davidia involucrata HOM05D001114 ORTHO05D000940 4.2e-08 60.5 94 35.1
MD04G1053000 Malus domestica HOM05D001114 ORTHO05D000940 4.2e-08 60.5 94 34.0
MD06G1047400 Malus domestica HOM05D001114 ORTHO05D000940 4.2e-08 60.5 94 34.0
RcHm_v2.0_Chr7g0205491 Rosa chinensis HOM05D001114 ORTHO05D000940 4.2e-08 60.5 94 34.0
Sabra07G0004100 Salix brachista HOM05D001114 ORTHO05D000940 4.2e-08 60.5 94 37.2
Ah.03g140590 Amaranthus hybridus HOM05D001114 ORTHO05D000940 5.5e-08 60.1 94 33.0
Prupe.5G057500 Prunus persica HOM05D001114 ORTHO05D000940 5.5e-08 60.1 94 34.0
Haze_22420 Corylus avellana HOM05D001114 ORTHO05D000940 9.3e-08 59.3 94 35.1
AT4G38320 Arabidopsis thaliana HOM05D001114 ORTHO05D000940 1.2e-07 58.9 27 92.6
SGA_v2.0_scaffold15G07469 Striga asiatica HOM05D001114 ORTHO05D000940 1.2e-07 58.9 88 36.4
AUR62004021 Chenopodium quinoa HOM05D001114 ORTHO05D000940 1.6e-07 58.5 94 34.0
AUR62007529 Chenopodium quinoa HOM05D001114 ORTHO05D000940 1.6e-07 58.5 94 34.0
Nitab4.5_0000142g0240 Nicotiana tabacum HOM05D001114 ORTHO05D000940 2.7e-07 57.8 27 85.2
HPP92_003662 Vanilla planifolia HOM05D001114 ORTHO05D000940 2.7e-07 57.8 94 36.2
FAN13G0654 Fragaria x ananassa HOM05D001114 ORTHO05D000940 3.5e-07 57.4 94 33.0
VMungo1309G0934 Vigna mungo HOM05D001114 ORTHO05D000940 3.5e-07 57.4 89 36.0
FAN08G2233 Fragaria x ananassa HOM05D001114 ORTHO05D000940 4.6e-07 57.0 94 33.0
CSS0018597 Camellia sinensis var. sinensis HOM05D001114 ORTHO05D000940 1.3e-06 55.5 91 34.1
EL10Ac6g15609 Beta vulgaris HOM05D001114 ORTHO05D000940 1.8e-06 55.1 94 30.9
FvH4_5g20320 Fragaria vesca HOM05D001114 ORTHO05D000940 1.8e-06 55.1 94 31.9
Actinidia10208 Actinidia chinensis HOM05D001114 ORTHO05D000940 2.3e-06 54.7 94 30.9
Dinv26944 Davidia involucrata HOM05D000714 ORTHO05D000940 2.3e-06 54.7 27 81.5
Nitab4.5_0007023g0030 Nicotiana tabacum HOM05D001114 ORTHO05D000940 3.0e-06 54.3 27 77.8
MD04G1052800 Malus domestica HOM05D001114 ORTHO05D000940 6.7e-06 53.1 94 31.9
Zm00001eb007880 Zea mays HOM05D001114 ORTHO05D000940 8.7e-06 52.8 94 31.9


User provided reference genes

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