Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G45510 Arabidopsis lyrata HOM05D006269 ORTHO05D001487 0.0e+00 1945.2 1051 100.0
AT2G46240 Arabidopsis thaliana HOM05D006269 ORTHO05D001487 0.0e+00 1629.4 1052 85.7
Carub.0004s2894 Capsella rubella HOM05D006269 ORTHO05D001487 0.0e+00 1287.7 1093 69.1
Thhalv10001302m.g Eutrema salsugineum HOM05D006269 ORTHO05D001487 8.2e-266 921.0 1068 54.9
BcaC02g12701 Brassica carinata HOM05D006269 ORTHO05D001487 5.4e-233 812.0 1208 47.8
BraA05t19151Z Brassica rapa HOM05D006269 ORTHO05D001487 3.0e-231 806.2 1250 45.9
C04p01780 Brassica napus HOM05D006269 ORTHO05D001487 5.0e-231 805.4 1229 46.4
A05p01560 Brassica napus HOM05D006269 ORTHO05D001487 9.5e-230 801.2 1235 46.2
BcaC02g12510 Brassica carinata HOM05D006269 ORTHO05D001487 1.2e-227 794.3 1235 45.6
Sp4g28290 Schrenkiella parvula HOM05D006269 ORTHO05D001487 5.8e-203 712.2 751 55.9
Aa31LG1G27630 Aethionema arabicum HOM05D006269 ORTHO05D001487 5.3e-172 609.4 1172 40.8
COL.COLO4_06360 Corchorus olitorius HOM05D006269 ORTHO05D001487 4.3e-73 280.8 1172 28.2
VMungo0331G1091 Vigna mungo HOM05D006269 ORTHO05D001487 4.9e-61 240.7 1165 26.7
Cfa003851 Carpinus fangiana HOM05D006269 ORTHO05D001487 3.0e-58 231.5 1304 24.7
Thecc.01G349600 Theobroma cacao HOM05D006269 ORTHO05D001487 4.3e-57 227.6 1020 28.1
Haze_15599 Corylus avellana HOM05D006269 ORTHO05D001487 5.7e-57 227.3 1295 25.1
Cpa.g.sc184.9 Carica papaya HOM05D006269 ORTHO05D001487 5.3e-55 220.7 1087 27.7
Phvul.010G107400 Phaseolus vulgaris HOM05D006269 ORTHO05D001487 4.5e-54 217.6 1232 25.2
vmacro13212 Vaccinium macrocarpon HOM05D006269 ORTHO05D001487 1.0e-53 216.5 1223 26.6
Potri.002G166300 Populus trichocarpa HOM05D006269 ORTHO05D001487 9.4e-52 209.9 1319 25.5
Sabra02G0145300 Salix brachista HOM05D006269 ORTHO05D001487 9.4e-52 209.9 1054 27.3
QL04p034904 Quercus lobata HOM05D006269 ORTHO05D001487 1.4e-50 206.1 1195 25.7
Sc01g0003100 Simmondsia chinensis HOM05D006269 ORTHO05D001487 1.8e-50 205.7 1199 25.4
Glyma.07G061500 Glycine max HOM05D006269 ORTHO05D001487 3.3e-49 201.4 1262 25.0
Actinidia20177 Actinidia chinensis HOM05D006269 ORTHO05D001487 7.4e-49 200.3 1144 26.7
Medtr8g028265 Medicago truncatula HOM05D006269 ORTHO05D001487 1.4e-47 196.1 950 26.7
Rhsim10G0141000 Rhododendron simsii HOM05D006269 ORTHO05D001487 4.1e-47 194.5 1209 25.7
Glyma.16G030000 Glycine max HOM05D006269 ORTHO05D001487 5.3e-47 194.1 1269 24.9
Peaxi162Scf01254g00022 Petunia axillaris HOM05D006269 ORTHO05D001487 6.9e-47 193.7 958 26.9
AUR62004430 Chenopodium quinoa HOM05D006269 ORTHO05D001487 1.5e-46 192.6 1315 24.6
Prupe.2G181700 Prunus persica HOM05D006269 ORTHO05D001487 2.6e-46 191.8 1245 24.7
AUR62022637 Chenopodium quinoa HOM05D006269 ORTHO05D001487 4.5e-46 191.0 1283 25.4
FvH4_7g15690 Fragaria vesca HOM05D006269 ORTHO05D001487 4.5e-46 191.0 1197 25.3
Gorai.004G153900 Gossypium raimondii HOM05D006269 ORTHO05D001487 7.7e-46 190.3 939 24.3
SalBow5G2113 Salvia bowleyana HOM05D006269 ORTHO05D001487 1.0e-45 189.9 1086 25.4
CAN.G78.145 Capsicum annuum HOM05D006269 ORTHO05D001487 3.8e-45 188.0 1013 26.1
Manes.01G250800 Manihot esculenta HOM05D006269 ORTHO05D001487 1.1e-44 186.4 1293 24.3
EL10Ac1g00334 Beta vulgaris HOM05D006269 ORTHO05D001487 2.5e-44 185.3 975 27.2
Gohir.D08G148200 Gossypium hirsutum HOM05D006269 ORTHO05D001487 2.5e-44 185.3 939 24.3
arahy.Tifrunner.gnm1.ann1.II6FYR Arachis hypogaea HOM05D006269 ORTHO05D001487 1.6e-43 182.6 824 27.5
Eucgr.D02334 Eucalyptus grandis HOM05D006269 ORTHO05D001487 2.7e-43 181.8 733 28.1
Aqoxy1G02938 Aquilegia oxysepala HOM05D006269 ORTHO05D001487 1.0e-42 179.9 848 26.3
Gohir.A08G126800 Gossypium hirsutum HOM05D006269 ORTHO05D001487 1.0e-42 179.9 1158 23.7
PGSC0003DMG400000079 Solanum tuberosum HOM05D006269 ORTHO05D001487 1.0e-42 179.9 920 26.1
Nitab4.5_0013021g0030 Nicotiana tabacum HOM05D006269 ORTHO05D001487 1.8e-42 179.1 983 25.4
Ciclev10018596m.g Citrus clementina HOM05D006269 ORTHO05D001487 3.0e-42 178.3 1241 24.7
Cc02_g38780 Coffea canephora HOM05D006269 ORTHO05D001487 5.1e-42 177.6 960 27.4
FAN06G3724 Fragaria x ananassa HOM05D006269 ORTHO05D001487 8.8e-42 176.8 1227 24.8
arahy.Tifrunner.gnm1.ann1.YSVF0U Arachis hypogaea HOM05D006269 ORTHO05D001487 2.0e-41 175.6 820 26.8
Hund27233 Selenicereus undatus HOM05D006269 ORTHO05D001487 2.6e-41 175.3 1262 24.6
Ah.05g180020 Amaranthus hybridus HOM05D006269 ORTHO05D001487 3.3e-41 174.9 1256 25.2
FAN06G2203 Fragaria x ananassa HOM05D006269 ORTHO05D001487 3.3e-41 174.9 1227 24.5
FAN10G2074 Fragaria x ananassa HOM05D006269 ORTHO05D001487 9.7e-41 173.3 1239 25.4
FAN10G3724 Fragaria x ananassa HOM05D006269 ORTHO05D001487 8.2e-40 170.2 1241 25.1
RcHm_v2.0_Chr1g0358421 Rosa chinensis HOM05D006269 ORTHO05D001487 1.8e-39 169.1 1068 24.8
Psat4g157480 Pisum sativum HOM05D006269 ORTHO05D001487 3.4e-38 164.9 1116 23.9
SGA_v2.0_scaffold11G05704 Striga asiatica HOM05D006269 ORTHO05D001487 1.7e-37 162.5 853 25.3
TPR.G21288 Trifolium pratense HOM05D006269 ORTHO05D001487 1.7e-37 162.5 1209 24.5
TAR374G0506 Trochodendron aralioides HOM05D006269 ORTHO05D001487 1.7e-37 162.5 1190 24.0
Migut.N01576 Erythranthe guttata HOM05D006269 ORTHO05D001487 1.1e-36 159.8 1078 24.9
Lj3g0001651 Lotus japonicus HOM05D006269 ORTHO05D001487 3.2e-36 158.3 1234 23.3
Lalb_Chr10g0096511 Lupinus albus HOM05D006269 ORTHO05D001487 3.2e-36 158.3 1225 24.5
FAN03G1935 Fragaria x ananassa HOM05D006269 ORTHO05D001487 7.2e-36 157.1 1228 24.3
CANSAT56G0891 Cannabis sativa HOM05D006269 ORTHO05D001487 3.6e-35 154.8 1142 24.3
Ca_23548_v3 Cicer arietinum L. HOM05D006269 ORTHO05D001487 4.7e-35 154.5 1045 22.8
PGR031G2857 Punica granatum HOM05D006269 ORTHO05D001487 6.7e-34 150.6 1209 24.3
Oeu008674.2 Olea europaea HOM05D006269 ORTHO05D001487 1.1e-33 149.8 484 30.2
Sed0002830 Sechium edule HOM05D006269 ORTHO05D001487 2.0e-33 149.1 1293 23.4
Solyc01g095320.4 Solanum lycopersicum HOM05D006269 ORTHO05D001487 2.8e-32 145.2 1037 24.0
MELO3C021171.2 Cucumis melo HOM05D006269 ORTHO05D001487 3.5e-30 138.3 1251 23.0
DCAR_008644 Daucus carota HOM05D001461 ORTHO05D001487 3.5e-30 138.3 891 24.5
ClCG06G003310 Citrullus lanatus HOM05D006269 ORTHO05D001487 7.7e-30 137.1 1290 23.2
MD01G1073600 Malus domestica HOM05D006269 ORTHO05D001487 7.7e-30 137.1 990 24.7
GSVIVG01027028001 Vitis vinifera HOM05D006269 ORTHO05D001487 1.3e-29 136.3 800 25.1
Actinidia10090 Actinidia chinensis HOM05D006269 ORTHO05D001487 1.9e-28 132.5 486 29.4
Phvul.010G106600 Phaseolus vulgaris HOM05D006269 ORTHO05D001487 3.2e-28 131.7 513 27.1
CsaV3_6G000970 Cucumis sativus L. HOM05D006269 ORTHO05D001487 2.1e-27 129.0 1064 23.1
Sopen01g039110 Solanum pennellii HOM05D006269 ORTHO05D001487 3.0e-26 125.2 1016 22.9
Lsat_1_v5_gn_3_138421 Lactuca sativa HOM05D006269 ORTHO05D001487 4.4e-25 121.3 874 25.2
Zm00001eb237960 Zea mays HOM05D006269 ORTHO05D001487 1.3e-24 119.8 1022 24.0
HPP92_008793 Vanilla planifolia HOM05D006269 ORTHO05D001487 6.3e-24 117.5 954 23.5
Zm00001eb364900 Zea mays HOM05D006269 ORTHO05D001487 1.6e-19 102.8 202 39.1
Zm00001eb380100 Zea mays HOM05D006269 ORTHO05D001487 3.6e-19 101.7 202 38.6
HanXRQChr06g0166911 Helianthus annuus HOM05D006269 ORTHO05D001487 4.7e-19 101.3 478 26.8
MBI06_g04302_MAGBIO Magnolia biondii HOM05D006269 ORTHO05D001487 2.3e-18 99.0 602 27.4
SEGI_27071 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 3.0e-18 98.6 664 23.9
ECA240G2267 Erigeron canadensis HOM05D001977 ORTHO05D002246 3.4e-17 95.1 604 25.2
Nitab4.5_0000305g0340 Nicotiana tabacum HOM05D006269 ORTHO05D001487 3.4e-17 95.1 454 24.9
Zm00001eb403850 Zea mays HOM05D006269 ORTHO05D001487 7.5e-17 94.0 254 32.3
SEGI_35486 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 2.8e-16 92.0 566 24.4
Zm00001eb095310 Zea mays HOM05D006269 ORTHO05D001487 3.7e-16 91.7 294 32.0
Oeu004921.1 Olea europaea HOM05D006269 ORTHO05D001487 4.1e-15 88.2 164 37.2
AagrBONN_evm.TU.Sc2ySwM_368.336 Anthoceros agrestis HOM05D006269 ORTHO05D001487 5.0e-13 81.3 152 32.9
MBI06_g04303_MAGBIO Magnolia biondii HOM05D006269 ORTHO05D001487 1.6e-11 76.3 247 29.6
Mapoly0035s0113 Marchantia polymorpha HOM05D006269 ORTHO05D001487 1.6e-11 76.3 298 29.2
Mapoly0097s0036 Marchantia polymorpha HOM05D006269 ORTHO05D001487 3.0e-10 72.0 201 28.4
MD13G1123300 Malus domestica HOM05D002685 ORTHO05D001487 2.6e-09 68.9 144 31.2
Glyma.18G186200 Glycine max HOM05D006269 ORTHO05D001487 7.5e-09 67.4 597 25.1
HanXRQChr14g0451041 Helianthus annuus HOM05D002685 ORTHO05D001487 7.5e-09 67.4 143 30.8
SEGI_19997 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 7.5e-09 67.4 310 25.2
SEGI_30715 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 7.5e-09 67.4 152 30.9
HanXRQChr14g0451421 Helianthus annuus HOM05D002685 ORTHO05D001487 9.8e-09 67.0 181 29.8
Pp3c26_10790 Physcomitrium patens HOM05D006269 ORTHO05D001487 9.8e-09 67.0 154 29.9
SMO172G0062 Selaginella moellendorffii HOM05D006269 ORTHO05D001487 1.7e-08 66.2 136 30.9
SEGI_15116 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 1.7e-08 66.2 130 32.3
Pp3c19_17670 Physcomitrium patens HOM05D006269 ORTHO05D001487 2.2e-08 65.9 228 26.3
SEGI_05188 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 2.2e-08 65.9 122 32.0
Duzib052G0088 Durio zibethinus HOM05D002685 ORTHO05D001487 3.7e-08 65.1 201 28.4
SEGI_38563 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 4.9e-08 64.7 297 26.9
Pp3c19_7760 Physcomitrium patens HOM05D006269 ORTHO05D001487 6.3e-08 64.3 111 33.3
Pp3c7_10910 Physcomitrium patens HOM05D002157 ORTHO05D002197 8.3e-08 63.9 116 32.8
Aa31LG7G9970 Aethionema arabicum HOM05D002685 ORTHO05D001487 1.1e-07 63.5 131 29.8
Gohir.A03G150201 Gossypium hirsutum HOM05D002685 ORTHO05D001487 1.1e-07 63.5 102 35.3
Mapoly0045s0108 Marchantia polymorpha HOM05D006269 ORTHO05D001487 1.4e-07 63.2 107 32.7
Nitab4.5_0004556g0030 Nicotiana tabacum HOM05D002685 ORTHO05D001487 1.4e-07 63.2 112 33.0
Zm00001eb382930 Zea mays HOM05D006269 ORTHO05D001487 1.4e-07 63.2 175 33.7
QL03p051288 Quercus lobata HOM05D002685 ORTHO05D001487 1.8e-07 62.8 103 35.9
Carub.0001s1174 Capsella rubella HOM05D002685 ORTHO05D001487 2.4e-07 62.4 117 35.9
AagrBONN_evm.TU.Sc2ySwM_228.5492 Anthoceros agrestis HOM05D006269 ORTHO05D001487 3.1e-07 62.0 279 25.4
THA.LOC104825581 Tarenaya hassleriana HOM05D002685 ORTHO05D001487 3.1e-07 62.0 225 26.2
Gorai.005G194700 Gossypium raimondii HOM05D002685 ORTHO05D001487 4.1e-07 61.6 182 29.1
MD16G1124100 Malus domestica HOM05D002685 ORTHO05D001487 4.1e-07 61.6 156 28.2
TAR629G1863 Trochodendron aralioides HOM05D002685 ORTHO05D001487 4.1e-07 61.6 105 33.3
COL.COLO4_24722 Corchorus olitorius HOM05D002685 ORTHO05D001487 5.4e-07 61.2 150 28.7
Nitab4.5_0000305g0330 Nicotiana tabacum HOM05D006269 ORTHO05D001487 5.4e-07 61.2 56 55.4
Sed0004040 Sechium edule HOM05D002685 ORTHO05D001487 5.4e-07 61.2 121 30.6
Aqoxy3G01654 Aquilegia oxysepala HOM05D002685 ORTHO05D001487 7.0e-07 60.8 156 30.1
ClCG07G015360 Citrullus lanatus HOM05D002685 ORTHO05D001487 7.0e-07 60.8 311 24.1
SEGI_37331 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 7.0e-07 60.8 245 26.5
COL.COLO4_35705 Corchorus olitorius HOM05D002685 ORTHO05D001487 9.2e-07 60.5 194 27.3
AL1G23310 Arabidopsis lyrata HOM05D002685 ORTHO05D001487 1.2e-06 60.1 124 32.3
Gohir.A03G150100 Gossypium hirsutum HOM05D002685 ORTHO05D001487 1.2e-06 60.1 182 28.6
Peaxi162Scf00128g00166 Petunia axillaris HOM05D002685 ORTHO05D001487 1.2e-06 60.1 118 28.0
Peaxi162Scf00442g00043 Petunia axillaris HOM05D002685 ORTHO05D001487 1.2e-06 60.1 107 32.7
Cpa.g.sc75.118 Carica papaya HOM05D002685 ORTHO05D001487 1.6e-06 59.7 105 31.4
Pp3c21_6840 Physcomitrium patens HOM05D006269 ORTHO05D001487 1.6e-06 59.7 107 32.7
AT1G12060 Arabidopsis thaliana HOM05D002685 ORTHO05D001487 2.0e-06 59.3 118 34.7
CAN.G65.93 Capsicum annuum HOM05D002685 ORTHO05D001487 2.0e-06 59.3 97 35.1
CARHR012420 Cardamine hirsuta HOM05D002685 ORTHO05D001487 2.0e-06 59.3 125 33.6
Cc07_g04040 Coffea canephora HOM05D005710 ORTHO05D004657 2.0e-06 59.3 125 31.2
COL.COLO4_03731 Corchorus olitorius HOM05D005710 ORTHO05D004657 2.0e-06 59.3 118 31.4
ECA234G0665 Erigeron canadensis HOM05D002685 ORTHO05D001487 2.0e-06 59.3 153 27.5
Thhalv10008770m.g Eutrema salsugineum HOM05D002685 ORTHO05D001487 2.0e-06 59.3 116 33.6
Lsat_1_v5_gn_4_2061 Lactuca sativa HOM05D002685 ORTHO05D001487 2.0e-06 59.3 104 31.7
Oeu001318.1 Olea europaea HOM05D002685 ORTHO05D001487 2.0e-06 59.3 143 28.7
Actinidia08046 Actinidia chinensis HOM05D002685 ORTHO05D001487 2.7e-06 58.9 161 26.1
Sopen04g006850 Solanum pennellii HOM05D002685 ORTHO05D001487 2.7e-06 58.9 105 32.4
Atru.chr11.2379 Acer truncatum HOM05D002685 ORTHO05D001487 3.5e-06 58.5 118 32.2
PGSC0003DMG400010462 Solanum tuberosum HOM05D002685 ORTHO05D001487 3.5e-06 58.5 97 32.0
PGSC0003DMG400041029 Solanum tuberosum HOM05D002685 ORTHO05D001487 3.5e-06 58.5 126 31.7
C08p15160 Brassica napus HOM05D002685 ORTHO05D001487 4.5e-06 58.2 118 32.2
BolC8t49146H Brassica oleracea HOM05D002685 ORTHO05D001487 4.5e-06 58.2 118 32.2
TWI34G1348 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 4.5e-06 58.2 123 30.9
Lj1C600T10 Lonicera japonica HOM05D002685 ORTHO05D001487 5.9e-06 57.8 165 30.3
PGSC0003DMG400023607 Solanum tuberosum HOM05D002685 ORTHO05D001487 5.9e-06 57.8 105 31.4
Thecc.02G200000 Theobroma cacao HOM05D002685 ORTHO05D001487 5.9e-06 57.8 288 25.7
Aa31LG1G2670 Aethionema arabicum HOM05D002685 ORTHO05D001487 7.8e-06 57.4 128 28.9
MELO3C017749.2 Cucumis melo HOM05D002685 ORTHO05D001487 7.8e-06 57.4 335 25.4
Lj1g0010375 Lotus japonicus HOM05D002685 ORTHO05D001487 7.8e-06 57.4 158 27.8
PSO478G3563 Papaver somniferum HOM05D002685 ORTHO05D001487 7.8e-06 57.4 109 32.1
TAR624G0212 Trochodendron aralioides HOM05D002685 ORTHO05D001487 7.8e-06 57.4 113 31.9


User provided reference genes

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