Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 1.3e-213 746.1 386 100.0
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 8.7e-181 637.1 379 86.0
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 1.3e-176 623.2 386 82.6
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 4.3e-172 608.2 381 84.0
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 1.1e-167 593.6 386 81.6
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 1.9e-167 592.8 406 77.8
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 1.6e-166 589.7 383 80.7
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 2.1e-166 589.3 387 81.7
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 3.6e-166 588.6 386 81.1
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 2.3e-165 585.9 387 81.4
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 1.6e-163 579.7 342 90.4
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 3.8e-160 568.5 388 78.6
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 5.9e-153 544.7 393 73.8
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 1.7e-131 473.4 377 66.8
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 6.0e-113 411.8 407 55.5
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 1.1e-111 407.5 402 57.5
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.2e-110 404.1 402 57.7
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 1.2e-110 404.1 402 57.7
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 3.1e-109 399.4 386 58.3
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 1.2e-108 397.5 402 56.2
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 1.3e-107 394.0 401 55.9
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 9.2e-106 387.9 402 56.7
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 6.0e-105 385.2 413 54.7
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 1.7e-104 383.6 406 53.9
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 2.3e-104 383.3 412 54.6
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 3.0e-104 382.9 407 53.8
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 5.0e-104 382.1 399 53.9
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 1.1e-103 380.9 413 54.7
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 1.5e-103 380.6 410 53.9
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 7.3e-103 378.3 410 52.4
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 2.1e-102 376.7 412 53.6
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 3.1e-101 372.9 408 52.9
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 1.2e-100 370.9 413 52.8
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 2.0e-100 370.2 400 51.5
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 4.4e-100 369.0 404 52.7
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 9.9e-100 367.9 404 52.7
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 9.9e-100 367.9 402 54.2
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 1.7e-99 367.1 401 52.6
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 4.9e-99 365.5 408 52.7
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.4e-98 364.0 402 53.5
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 1.9e-98 363.6 399 54.1
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 2.4e-98 363.2 413 51.6
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 3.2e-98 362.8 404 51.7
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 3.2e-98 362.8 411 51.3
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 5.4e-98 362.1 403 52.1
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 2.1e-97 360.1 396 52.5
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 2.1e-97 360.1 406 52.0
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 3.5e-97 359.4 409 52.6
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 4.6e-97 359.0 408 51.2
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 6.0e-97 358.6 392 51.8
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 1.0e-96 357.8 400 51.8
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 2.3e-96 356.7 401 51.6
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 2.3e-96 356.7 406 50.5
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 8.6e-96 354.8 408 51.5
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 1.5e-95 354.0 401 52.1
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 5.6e-95 352.1 403 51.6
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 2.1e-94 350.1 403 50.9
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 2.8e-94 349.7 419 51.1
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 1.4e-93 347.4 450 47.3
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 2.4e-93 346.7 404 52.0
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 4.0e-93 345.9 395 50.9
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 4.0e-93 345.9 399 51.6
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 6.8e-93 345.1 409 49.4
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 6.8e-93 345.1 419 48.4
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 8.9e-93 344.7 402 50.2
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 1.2e-92 344.4 437 49.0
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 1.5e-92 344.0 405 48.9
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 2.0e-92 343.6 399 50.9
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 3.4e-92 342.8 407 50.1
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 3.4e-92 342.8 397 49.9
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 7.6e-92 341.7 396 50.8
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 4.9e-91 339.0 404 50.5
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 6.4e-91 338.6 402 49.5
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 1.6e-89 334.0 350 56.0
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 1.6e-89 334.0 377 50.9
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 3.5e-89 332.8 323 57.6
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.5e-89 332.8 428 47.4
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 6.0e-89 332.0 443 45.6
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 6.0e-89 332.0 371 55.0
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.0e-88 329.7 443 45.4
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 3.9e-88 329.3 371 53.4
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 5.1e-88 328.9 393 49.1
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 5.1e-88 328.9 405 49.6
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 8.7e-88 328.2 422 49.1
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 8.7e-88 328.2 435 46.4
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.1e-87 327.8 386 50.3
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 1.5e-87 327.4 413 48.7
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 1.9e-87 327.0 397 48.4
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 2.5e-87 326.6 394 49.2
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 2.1e-86 323.6 369 50.1
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 1.1e-85 321.2 378 50.0
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 5.2e-85 318.9 416 47.1
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 1.2e-84 317.8 357 52.4
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 3.4e-84 316.2 396 47.2
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 4.4e-84 315.8 445 44.9
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 7.6e-84 315.1 386 50.0
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 2.2e-83 313.5 393 48.9
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 2.7e-81 306.6 351 53.0
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 2.3e-80 303.5 411 47.0
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 1.3e-78 297.7 493 39.6
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 2.1e-78 297.0 402 46.3
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 2.1e-78 297.0 405 43.5
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 9.3e-74 281.6 498 39.0
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 1.3e-72 277.7 437 42.1
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 5.8e-68 262.3 413 44.3
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 2.5e-63 246.9 385 42.6
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 7.4e-63 245.4 376 46.0
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 6.9e-61 238.8 317 47.0
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 3.0e-56 223.4 288 48.3
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 6.3e-54 215.7 292 45.9
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 5.3e-53 212.6 321 41.4
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 2.0e-52 210.7 243 51.0
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 2.6e-52 210.3 357 43.7
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 1.3e-51 208.0 229 54.6
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 1.3e-46 191.4 317 42.9
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 1.7e-46 191.0 325 36.6
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 1.0e-43 181.8 230 48.7
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 8.8e-40 168.7 334 36.2
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 2.3e-32 144.1 420 31.4
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 5.9e-28 129.4 146 49.3
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 5.9e-28 129.4 146 49.3
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 7.7e-28 129.0 163 50.9
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 6.5e-27 125.9 325 31.4
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 1.5e-26 124.8 130 52.3
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 1.3e-22 111.7 141 46.8
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 4.1e-21 106.7 115 48.7
Sp4g28240 Schrenkiella parvula HOM05D005133 ORTHO05D006685 2.9e-19 100.5 52 84.6
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 3.8e-19 100.1 287 27.9
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 4.2e-18 96.7 47 87.2
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 9.4e-18 95.5 98 62.2
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.6e-17 94.7 166 42.2
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 7.5e-15 85.9 140 41.4
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.4e-13 81.6 65 70.8
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 1.5e-10 71.6 65 60.0
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 7.2e-10 69.3 94 41.5
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 1.0e-08 65.5 118 39.8


User provided reference genes

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