Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 0.0e+00 1172.9 736 100.0
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 4.0e-291 1004.6 737 85.5
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 1.8e-275 952.6 737 84.4
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 8.6e-270 933.7 737 82.8
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 2.4e-248 862.4 740 79.2
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 3.0e-230 802.4 735 70.2
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 1.1e-229 800.4 738 73.8
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 7.9e-223 777.7 735 69.0
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 2.9e-217 759.2 736 69.0
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 4.9e-217 758.4 736 69.0
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 1.9e-216 756.5 736 68.9
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 4.2e-216 755.4 736 68.5
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 1.6e-215 753.4 736 68.3
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 6.0e-215 751.5 733 70.1
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 1.2e-210 737.3 735 69.5
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 1.2e-207 727.2 736 67.4
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 7.4e-205 718.0 732 66.8
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 2.5e-200 703.0 745 65.4
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 6.1e-199 698.4 747 65.2
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 2.8e-196 689.5 756 64.9
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 4.5e-194 682.2 736 64.7
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 3.3e-189 666.0 743 57.9
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 3.5e-186 656.0 661 66.6
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 1.0e-182 644.4 788 54.3
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 9.7e-181 637.9 789 54.6
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 3.7e-180 636.0 463 88.3
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 1.8e-179 633.6 790 52.8
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 1.2e-178 630.9 800 52.2
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 6.5e-177 625.2 747 59.8
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 2.8e-172 609.8 797 51.3
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 6.3e-172 608.6 792 54.8
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 4.0e-166 589.3 803 51.4
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 3.7e-164 582.8 794 50.0
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 3.1e-163 579.7 803 49.4
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 4.1e-163 579.3 784 49.0
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 1.6e-162 577.4 784 49.1
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.3e-161 574.3 772 53.0
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.7e-161 573.9 781 53.1
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 2.9e-161 573.2 782 57.2
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 3.8e-161 572.8 793 49.4
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 6.6e-161 572.0 809 48.7
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 6.6e-161 572.0 782 58.3
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 1.1e-160 571.2 790 52.9
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 1.1e-160 571.2 802 49.0
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 2.8e-159 566.6 788 48.0
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 3.6e-159 566.2 788 50.0
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 2.6e-157 560.1 760 52.9
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 3.4e-157 559.7 741 55.1
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 3.7e-156 556.2 837 47.3
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 1.8e-155 553.9 795 48.9
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 1.3e-153 547.7 813 47.7
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 3.0e-153 546.6 789 48.5
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 3.9e-153 546.2 783 50.2
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 1.9e-152 543.9 805 48.0
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 2.5e-152 543.5 785 49.2
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 4.7e-151 539.3 815 46.3
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 3.1e-150 536.6 786 49.0
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 3.4e-149 533.1 782 50.3
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 3.4e-149 533.1 785 48.9
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 7.5e-149 531.9 781 48.0
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 9.8e-149 531.6 814 45.8
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 2.2e-148 530.4 792 46.7
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 2.2e-148 530.4 726 51.7
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 3.7e-148 529.6 782 50.4
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 3.7e-148 529.6 789 46.0
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 6.4e-148 528.9 782 49.2
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.9e-147 527.3 782 50.4
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 2.4e-147 526.9 785 45.9
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 3.5e-146 523.1 775 50.2
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 4.6e-146 522.7 789 46.8
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 4.6e-146 522.7 775 49.5
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 3.9e-145 519.6 711 56.1
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 1.1e-144 518.1 841 45.1
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 2.5e-144 516.9 790 46.5
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 3.3e-144 516.5 798 49.0
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 3.3e-144 516.5 789 47.3
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 4.3e-144 516.2 698 55.0
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 5.6e-144 515.8 794 48.6
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 5.6e-144 515.8 789 48.9
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 4.7e-143 512.7 799 46.6
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.1e-142 511.5 806 49.0
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 3.1e-142 510.0 775 49.5
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 1.2e-141 508.1 818 44.6
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 1.2e-141 508.1 783 50.1
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 1.1e-139 501.5 798 46.1
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 1.4e-139 501.1 803 46.3
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 3.2e-139 500.0 712 48.5
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 3.2e-139 500.0 783 44.3
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 7.1e-139 498.8 783 44.3
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 9.2e-139 498.4 849 47.0
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 1.2e-138 498.0 785 46.9
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 1.2e-138 498.0 773 52.4
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 2.1e-138 497.3 795 49.3
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 3.9e-137 493.0 711 48.2
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 8.6e-137 491.9 788 48.1
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 1.1e-136 491.5 752 50.1
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 2.5e-136 490.3 790 50.9
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 7.3e-136 488.8 703 53.6
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 1.6e-135 487.6 941 40.3
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 2.0e-133 480.7 761 46.3
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 3.4e-133 479.9 784 51.3
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 1.7e-132 477.6 788 42.5
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 7.1e-131 472.2 781 43.4
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 2.1e-130 470.7 772 43.5
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 1.0e-129 468.4 792 47.3
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 1.9e-128 464.2 787 52.9
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 1.9e-128 464.2 715 50.6
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 3.3e-128 463.4 784 45.7
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 3.6e-127 459.9 615 54.0
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 2.6e-125 453.8 753 43.3
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 4.4e-125 453.0 827 43.8
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 5.8e-125 452.6 797 43.9
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 2.9e-124 450.3 737 46.9
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 4.9e-124 449.5 788 47.6
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 6.4e-124 449.1 693 45.9
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 1.1e-118 431.8 780 41.4
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 2.4e-118 430.6 614 50.0
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 1.5e-117 427.9 521 52.0
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 2.6e-117 427.2 627 45.8
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 7.6e-117 425.6 614 49.5
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 4.9e-116 422.9 806 45.0
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 1.6e-114 417.9 700 48.6
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 3.9e-113 413.3 819 40.8
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 5.3e-110 402.9 719 46.6
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 9.9e-109 398.7 733 45.8
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 3.0e-105 387.1 507 49.9
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 3.3e-104 383.6 763 43.9
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 1.8e-102 377.9 757 38.3
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 2.4e-102 377.5 783 39.6
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 3.5e-98 363.6 794 38.8
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 4.5e-93 346.7 754 38.1
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 3.2e-91 340.5 850 38.5
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 5.1e-89 333.2 362 56.4
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 1.4e-86 325.1 747 39.2
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 1.8e-78 298.1 337 54.3
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 1.5e-77 295.0 321 56.1
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 1.2e-74 285.4 253 67.6
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 1.6e-74 285.0 597 39.7
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 5.9e-69 266.5 742 32.3
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 8.5e-60 236.1 264 51.9
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 8.8e-57 226.1 271 49.1
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 7.0e-54 216.5 378 43.4
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 7.0e-54 216.5 299 50.5
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 1.4e-49 202.2 353 40.2
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 1.1e-43 182.6 220 47.3
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 1.1e-38 166.0 192 57.8
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 7.0e-38 163.3 409 36.4
BcaC08g45137 Brassica carinata HOM05D003721 ORTHO05D004303 1.7e-36 158.7 302 41.1
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 1.0e-28 132.9 172 54.1
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 3.0e-28 131.3 183 50.8
Cpa.g.sc11.56 Carica papaya HOM05D003721 ORTHO05D004303 5.0e-28 130.6 108 66.7
Carub.0005s2826 Capsella rubella HOM05D003721 ORTHO05D004303 1.2e-26 125.9 229 41.9
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.1e-25 122.9 402 31.1
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 1.5e-24 119.0 127 51.2
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 5.8e-24 117.1 130 54.6
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 1.9e-22 112.1 90 67.8
BcaC07g40658 Brassica carinata HOM05D003721 ORTHO05D004303 5.1e-20 104.0 296 35.8
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 3.6e-18 97.8 105 49.5
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 3.4e-16 91.3 140 47.9
Actinidia37723 Actinidia chinensis HOM05D003721 ORTHO05D004303 9.9e-16 89.7 177 40.1
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 2.9e-15 88.2 243 30.9
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 1.1e-14 86.3 117 45.3
Actinidia10079 Actinidia chinensis HOM05D003721 ORTHO05D004303 2.1e-13 82.0 87 56.3
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.7e-12 79.0 64 64.1
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 6.6e-12 77.0 205 33.7
SEGI_39264 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 5.6e-11 73.9 384 26.6
AL5G44110 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 1.6e-10 72.4 79 57.0
Actinidia21288 Actinidia chinensis HOM05D003721 ORTHO05D004303 6.2e-10 70.5 117 43.6
BcaC07g40654 Brassica carinata HOM05D003721 ORTHO05D004303 2.4e-09 68.6 421 37.5
Rhsim05G0209700 Rhododendron simsii HOM05D003721 ORTHO05D004303 5.8e-08 63.9 76 50.0
CBR_g40298 Chara braunii HOM05D003721 ORTHO05D004303 9.9e-08 63.2 152 34.2


User provided reference genes

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