Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G45290 Arabidopsis lyrata HOM05D013471 ORTHO05D015349 4.4e-226 787.7 428 100.0
A05p00830 Brassica napus HOM05D013471 ORTHO05D015349 2.2e-92 343.6 437 49.4
BcaC02g12825 Brassica carinata HOM05D013471 ORTHO05D015349 8.4e-92 341.7 428 49.8
BraA05t19086Z Brassica rapa HOM05D013471 ORTHO05D015349 3.9e-89 332.8 438 48.9
C04p01000 Brassica napus HOM05D013471 ORTHO05D015349 1.6e-87 327.4 475 46.1
BcaC02g12610 Brassica carinata HOM05D013471 ORTHO05D015349 4.5e-85 319.3 412 55.3
BolC4t21738H Brassica oleracea HOM05D013471 ORTHO05D015349 4.5e-85 319.3 412 55.3
BcaC02g12596 Brassica carinata HOM05D013471 ORTHO05D015349 9.9e-85 318.2 451 46.8
BolC4t21715H Brassica oleracea HOM05D013471 ORTHO05D015349 2.2e-84 317.0 412 49.3
BcaB02g09550 Brassica carinata HOM05D013471 ORTHO05D015349 5.6e-80 302.4 412 48.1
BcaC02g12621 Brassica carinata HOM05D013471 ORTHO05D015349 1.7e-60 237.7 459 39.2
BolC4t21753H Brassica oleracea HOM05D013471 ORTHO05D015349 2.2e-60 237.3 330 45.8
AT3G60980 Arabidopsis thaliana HOM05D002825 ORTHO05D003824 2.4e-30 137.5 410 27.6
AL5G29610 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 4.1e-30 136.7 385 29.4
AL5G44790 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 5.4e-30 136.3 423 25.5
AL5G43690 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 1.6e-29 134.8 431 28.3
Thhalv10023497m.g Eutrema salsugineum HOM05D002825 ORTHO05D003824 5.9e-29 132.9 421 30.2
AL5G43650 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 2.2e-28 131.0 408 27.5
Carub.0007s2495 Capsella rubella HOM05D002825 ORTHO05D003824 6.5e-28 129.4 436 28.4
AL4G44550 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 2.5e-27 127.5 442 26.9
BolC1t04813H Brassica oleracea HOM05D002825 ORTHO05D003824 4.7e-26 123.2 415 31.6
AL5G43830 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 5.2e-25 119.8 411 27.3
BcaC01g05126 Brassica carinata HOM05D002825 ORTHO05D003824 2.6e-24 117.5 414 26.3
Carub.0005s2724 Capsella rubella HOM05D002825 ORTHO05D003824 4.9e-23 113.2 430 30.7
Carub.0201s0001 Capsella rubella HOM05D002825 ORTHO05D003824 4.1e-22 110.2 387 27.4
PGR142G0082 Punica granatum HOM05D002825 ORTHO05D003824 4.1e-22 110.2 410 29.3
AL4G44540 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 5.4e-22 109.8 345 35.4
A03p25220 Brassica napus HOM05D002825 ORTHO05D003824 5.4e-22 109.8 378 28.8
C04p01010 Brassica napus HOM05D002825 ORTHO05D011549 9.1e-22 109.0 457 26.0
BraA03t11722Z Brassica rapa HOM05D002825 ORTHO05D003824 1.6e-21 108.2 378 27.8
CARHR170890 Cardamine hirsuta HOM05D002825 ORTHO05D003824 4.5e-21 106.7 477 30.2
BolC3t15358H Brassica oleracea HOM05D002825 ORTHO05D003824 5.9e-21 106.3 414 27.5
C03p30090 Brassica napus HOM05D002825 ORTHO05D003824 1.0e-20 105.5 414 27.5
RcHm_v2.0_Chr3g0472581 Rosa chinensis HOM05D002825 ORTHO05D003824 2.3e-20 104.4 320 29.7
C06p27760 Brassica napus HOM05D002825 ORTHO05D003824 2.9e-20 104.0 354 29.4
BolC6t37944H Brassica oleracea HOM05D002825 ORTHO05D003824 2.9e-20 104.0 353 29.5
Lalb_Chr18g0061131 Lupinus albus HOM05D002825 ORTHO05D003824 3.8e-20 103.6 400 28.2
BcaC08g45154 Brassica carinata HOM05D002825 ORTHO05D003824 5.0e-20 103.2 353 29.5
CARHR265210 Cardamine hirsuta HOM05D002825 ORTHO05D011549 5.0e-20 103.2 397 32.5
AL5G42790 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 8.6e-20 102.4 364 30.8
BcaC02g12622 Brassica carinata HOM05D002825 ORTHO05D011549 2.5e-19 100.9 391 25.8
CARHR140100 Cardamine hirsuta HOM05D002825 ORTHO05D003824 7.2e-19 99.4 384 31.2
Thhalv10023949m.g Eutrema salsugineum HOM05D002825 ORTHO05D003824 1.2e-18 98.6 390 26.7
FAN18G3010 Fragaria x ananassa HOM05D002825 ORTHO05D003824 1.2e-18 98.6 410 27.6
AL3G34220 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 1.6e-18 98.2 368 25.8
C09p31390 Brassica napus HOM05D002825 ORTHO05D003824 2.1e-18 97.8 357 28.3
FAN04G1220 Fragaria x ananassa HOM05D002825 ORTHO05D003824 2.1e-18 97.8 410 27.6
Lsat_1_v5_gn_7_77221 Lactuca sativa HOM05D002825 ORTHO05D003824 2.1e-18 97.8 406 27.8
BolC4t21754H Brassica oleracea HOM05D002825 ORTHO05D011549 3.6e-18 97.1 453 24.7
BcaC05g24908 Brassica carinata HOM05D002825 ORTHO05D003824 8.0e-18 95.9 389 30.3
A05p00840 Brassica napus HOM05D002825 ORTHO05D011549 8.0e-18 95.9 455 24.4
BcaC01g05127 Brassica carinata HOM05D002825 ORTHO05D003824 1.0e-17 95.5 340 28.5
BraA05t19087Z Brassica rapa HOM05D002825 ORTHO05D011549 1.4e-17 95.1 455 24.6
C01p48580 Brassica napus HOM05D002825 ORTHO05D003824 1.8e-17 94.7 337 24.3
Carub.0004s2842 Capsella rubella HOM05D002825 ORTHO05D011549 2.3e-17 94.4 394 27.7
AT5G28340 Arabidopsis thaliana HOM05D002825 ORTHO05D011549 3.0e-17 94.0 327 26.9
AT5G28380 Arabidopsis thaliana HOM05D002825 ORTHO05D011549 3.0e-17 94.0 327 26.9
FAN08G2274 Fragaria x ananassa HOM05D002825 ORTHO05D003824 4.0e-17 93.6 404 26.5
Thhalv10006738m.g Eutrema salsugineum HOM05D002825 ORTHO05D003824 5.2e-17 93.2 383 35.8
BcaC01g05136 Brassica carinata HOM05D002825 ORTHO05D003824 8.9e-17 92.4 355 27.3
FvH4_5g27880 Fragaria vesca HOM05D002825 ORTHO05D003824 3.4e-16 90.5 410 29.0
BcaB01g03268 Brassica carinata HOM05D002825 ORTHO05D003824 7.5e-16 89.4 373 26.5
BcaC02g12824 Brassica carinata HOM05D002825 ORTHO05D011549 9.8e-16 89.0 380 24.7
BolC4t21716H Brassica oleracea HOM05D002825 ORTHO05D011549 1.7e-15 88.2 368 26.6
Carub.0005s2723 Capsella rubella HOM05D002825 ORTHO05D023647 1.7e-15 88.2 496 24.8
AL3G34230 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 2.9e-15 87.4 337 25.2
BcaB02g09551 Brassica carinata HOM05D002825 ORTHO05D011549 2.9e-15 87.4 376 25.3
C07p48550 Brassica napus HOM05D002825 ORTHO05D003824 3.7e-15 87.0 334 24.0
ECA236G4782 Erigeron canadensis HOM05D002825 ORTHO05D003824 3.7e-15 87.0 407 27.3
Cpa.g.sc113.4 Carica papaya HOM05D002825 ORTHO05D003824 4.9e-15 86.7 404 34.9
BcaC02g12609 Brassica carinata HOM05D002825 ORTHO05D011549 1.8e-14 84.7 377 24.9
BcaC06g33535 Brassica carinata HOM05D002825 ORTHO05D003824 1.8e-14 84.7 334 24.3
BolC4t21737H Brassica oleracea HOM05D002825 ORTHO05D011549 1.8e-14 84.7 377 24.9
Carub.0004s2841 Capsella rubella HOM05D002825 ORTHO05D003824 3.2e-14 84.0 400 26.0
A05p25940 Brassica napus HOM05D002825 ORTHO05D011549 4.1e-14 83.6 354 25.4
A06p06900 Brassica napus HOM05D002825 ORTHO05D003824 4.1e-14 83.6 420 32.9
BraA06t23906Z Brassica rapa HOM05D002825 ORTHO05D003824 4.1e-14 83.6 420 32.9
Potri.004G227800 Populus trichocarpa HOM05D002825 ORTHO05D003824 4.1e-14 83.6 398 26.6
AL7G38410 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 5.4e-14 83.2 354 30.5
BcaC02g12597 Brassica carinata HOM05D002825 ORTHO05D011549 5.4e-14 83.2 377 24.9
VMungo0540G0272 Vigna mungo HOM05D002825 ORTHO05D003824 5.4e-14 83.2 402 25.6
CARHR170900 Cardamine hirsuta HOM05D002825 ORTHO05D023647 2.7e-13 80.9 336 27.4
Ca_17359_v3 Cicer arietinum L. HOM05D002825 ORTHO05D003824 2.7e-13 80.9 456 32.0
AL5G42780 Arabidopsis lyrata HOM05D002825 ORTHO05D023647 5.9e-13 79.7 281 29.5
AL5G43820 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 1.0e-12 79.0 396 30.1
THA.LOC104823675 Tarenaya hassleriana HOM05D002825 ORTHO05D003824 1.3e-12 78.6 123 41.5
BolC7t45363H Brassica oleracea HOM05D002825 ORTHO05D003824 1.7e-12 78.2 410 22.4
AL1G60310 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 2.3e-12 77.8 228 27.2
Sp1g08860 Schrenkiella parvula HOM05D002825 ORTHO05D003824 2.3e-12 77.8 118 43.2
Aa31LG1G4670 Aethionema arabicum HOM05D002825 ORTHO05D003824 2.9e-12 77.4 117 42.7
Sabra01G0172800 Salix brachista HOM05D002825 ORTHO05D003824 5.0e-12 76.6 415 31.3
THA.LOC104823676 Tarenaya hassleriana HOM05D002825 ORTHO05D003824 6.6e-12 76.3 120 40.8
A08p34080 Brassica napus HOM05D002825 ORTHO05D003824 1.1e-11 75.5 120 40.8
EL10Ac6g14013 Beta vulgaris HOM05D002825 ORTHO05D003824 1.5e-11 75.1 399 24.3
Medtr8g102650 Medicago truncatula HOM05D002825 ORTHO05D003824 1.5e-11 75.1 357 26.3
AL5G44690 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 1.9e-11 74.7 383 32.9
Gohir.D04G010500 Gossypium hirsutum HOM05D002825 ORTHO05D003824 1.9e-11 74.7 114 41.2
Gorai.012G012400 Gossypium raimondii HOM05D002825 ORTHO05D003824 1.9e-11 74.7 114 41.2
BraA08t35321Z Brassica rapa HOM05D002825 ORTHO05D003824 2.5e-11 74.3 120 40.8
Carub.0001s0966 Capsella rubella HOM05D002825 ORTHO05D003824 3.3e-11 73.9 115 40.9
BolC5t29589H Brassica oleracea HOM05D002825 ORTHO05D003824 4.3e-11 73.6 420 31.9
TWI63G1692 Tripterygium wilfordii HOM05D002825 ORTHO05D003824 4.3e-11 73.6 401 31.9
BcaC07g38540 Brassica carinata HOM05D002825 ORTHO05D003824 5.6e-11 73.2 120 38.3
C05p08380 Brassica napus HOM05D002825 ORTHO05D003824 5.6e-11 73.2 445 31.7
C08p13530 Brassica napus HOM05D002825 ORTHO05D003824 5.6e-11 73.2 120 38.3
BolC8t48989H Brassica oleracea HOM05D002825 ORTHO05D003824 5.6e-11 73.2 120 38.3
CANSAT80G1108 Cannabis sativa HOM05D002825 ORTHO05D003824 5.6e-11 73.2 113 40.7
Nitab4.5_0001057g0030 Nicotiana tabacum HOM05D002825 ORTHO05D003824 5.6e-11 73.2 373 32.2
Gohir.A05G405100 Gossypium hirsutum HOM05D002825 ORTHO05D003824 7.3e-11 72.8 114 41.2
Nitab4.5_0001129g0060 Nicotiana tabacum HOM05D002825 ORTHO05D003824 7.3e-11 72.8 362 32.0
AL1G21000 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 9.5e-11 72.4 115 39.1
Eucgr.I02789 Eucalyptus grandis HOM05D002825 ORTHO05D003824 9.5e-11 72.4 115 40.9
Thecc.10G188300 Theobroma cacao HOM05D002825 ORTHO05D003824 2.1e-10 71.2 114 41.2
CARHR010370 Cardamine hirsuta HOM05D002825 ORTHO05D003824 2.8e-10 70.9 120 40.0
Duzib128G0132 Durio zibethinus HOM05D002825 ORTHO05D003824 2.8e-10 70.9 114 39.5
Glyma.16G001000 Glycine max HOM05D002825 ORTHO05D003824 2.8e-10 70.9 410 32.4
AT1G10270 Arabidopsis thaliana HOM05D002825 ORTHO05D003824 3.6e-10 70.5 120 39.2
BcaNung04658 Brassica carinata HOM05D002825 ORTHO05D003824 3.6e-10 70.5 268 24.6
CiPaw.05G002300 Carya illinoinensis HOM05D002825 ORTHO05D003824 3.6e-10 70.5 403 24.1
COL.COLO4_19503 Corchorus olitorius HOM05D002825 ORTHO05D003824 3.6e-10 70.5 114 39.5
Lj6g0026509 Lotus japonicus HOM05D002825 ORTHO05D003824 3.6e-10 70.5 114 38.6
BcaC07g41827 Brassica carinata HOM05D002825 ORTHO05D003824 4.7e-10 70.1 117 39.3
A09p65140 Brassica napus HOM05D002825 ORTHO05D003824 4.7e-10 70.1 120 40.0
C08p49080 Brassica napus HOM05D002825 ORTHO05D003824 4.7e-10 70.1 117 39.3
BraA09t41857Z Brassica rapa HOM05D002825 ORTHO05D003824 4.7e-10 70.1 120 40.0
RcHm_v2.0_Chr7g0220071 Rosa chinensis HOM05D002825 ORTHO05D003824 4.7e-10 70.1 353 26.3
GSVIVG01023159001 Vitis vinifera HOM05D002825 ORTHO05D003824 4.7e-10 70.1 378 34.1
CAN.G855.39 Capsicum annuum HOM05D002825 ORTHO05D003824 6.2e-10 69.7 366 26.2
Ah.11g046920 Amaranthus hybridus HOM05D002825 ORTHO05D003824 8.0e-10 69.3 166 48.8
Solyc01g103160.3 Solanum lycopersicum HOM05D002825 ORTHO05D003824 8.0e-10 69.3 366 31.4
Sopen01g045570 Solanum pennellii HOM05D002825 ORTHO05D003824 1.0e-09 68.9 366 31.1
BcaB08g37339 Brassica carinata HOM05D002825 ORTHO05D003824 1.4e-09 68.6 401 31.9
AL5G43680 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 1.8e-09 68.2 398 31.2
AL5G44780 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 1.8e-09 68.2 358 32.4
BolC9t55997H Brassica oleracea HOM05D002825 ORTHO05D003824 1.8e-09 68.2 161 30.4
ClCG10G007350 Citrullus lanatus HOM05D002825 ORTHO05D003824 1.8e-09 68.2 114 36.0
Hund15406 Selenicereus undatus HOM05D002825 ORTHO05D003824 1.8e-09 68.2 362 26.8
PGSC0003DMG400024905 Solanum tuberosum HOM05D002825 ORTHO05D003824 1.8e-09 68.2 366 31.1
Carub.0005s2842 Capsella rubella HOM05D002825 ORTHO05D011549 3.1e-09 67.4 393 25.4
Carub.0006s2575 Capsella rubella HOM05D002825 ORTHO05D011549 3.1e-09 67.4 234 26.5
Atru.chr13.1188 Acer truncatum HOM05D002825 ORTHO05D003824 4.0e-09 67.0 114 36.8
Phvul.006G221100 Phaseolus vulgaris HOM05D002825 ORTHO05D003824 6.8e-09 66.2 113 37.2
Sed0018539 Sechium edule HOM05D002825 ORTHO05D003824 6.8e-09 66.2 114 36.0
Nn8g41098 Nelumbo nucifera HOM05D002825 ORTHO05D003824 8.9e-09 65.9 105 36.2
BcaC08g45156 Brassica carinata HOM05D002825 ORTHO05D021407 1.5e-08 65.1 351 23.4
Ciclev10000271m.g Citrus clementina HOM05D002825 ORTHO05D003824 3.4e-08 63.9 114 35.1
MELO3C021840.2 Cucumis melo HOM05D002825 ORTHO05D003824 4.4e-08 63.5 392 30.6
Atru.chr6.351 Acer truncatum HOM05D002825 ORTHO05D003824 9.8e-08 62.4 114 34.2
Atru.chr6.402 Acer truncatum HOM05D002825 ORTHO05D003824 9.8e-08 62.4 114 34.2
Dinv29670 Davidia involucrata HOM05D002825 ORTHO05D003824 9.8e-08 62.4 339 28.6
Glyma.12G164700 Glycine max HOM05D002825 ORTHO05D003824 9.8e-08 62.4 114 35.1
BcaC09g48563 Brassica carinata HOM05D002825 ORTHO05D003824 1.3e-07 62.0 124 30.6
MD15G1441500 Malus domestica HOM05D002825 ORTHO05D003824 1.3e-07 62.0 99 45.5
BcaNung04659 Brassica carinata HOM05D002825 ORTHO05D003824 1.7e-07 61.6 95 40.0
MD08G1246600 Malus domestica HOM05D002825 ORTHO05D003824 1.7e-07 61.6 99 45.5
Manes.07G028200 Manihot esculenta HOM05D002825 ORTHO05D003824 1.7e-07 61.6 114 36.0
Potri.003G002950 Populus trichocarpa HOM05D002825 ORTHO05D003824 1.7e-07 61.6 114 36.0
Carub.0201s0002 Capsella rubella HOM05D002825 ORTHO05D011549 2.2e-07 61.2 368 26.4
CsaV3_2G036260 Cucumis sativus L. HOM05D002825 ORTHO05D003824 2.2e-07 61.2 392 30.4
Oeu000151.1 Olea europaea HOM05D002825 ORTHO05D003824 2.9e-07 60.8 167 31.7
QL02p102471 Quercus lobata HOM05D002825 ORTHO05D003824 2.9e-07 60.8 100 44.0
QL02p103093 Quercus lobata HOM05D002825 ORTHO05D003824 2.9e-07 60.8 100 44.0
AT3G60960 Arabidopsis thaliana HOM05D002825 ORTHO05D011549 3.7e-07 60.5 355 31.5
DCAR_022278 Daucus carota HOM05D002825 ORTHO05D003824 6.4e-07 59.7 364 23.6
CSS0030972 Camellia sinensis var. sinensis HOM05D002825 ORTHO05D003824 8.3e-07 59.3 109 35.8
Hma1.2p1_0052F.1_g029920 Hydrangea macrophylla HOM05D002825 ORTHO05D003824 8.3e-07 59.3 109 36.7
Lj9A281T41 Lonicera japonica HOM05D002825 ORTHO05D003824 1.1e-06 58.9 109 33.9
BcaC02g09004 Brassica carinata HOM05D002825 ORTHO05D011549 2.4e-06 57.8 166 27.7
Psat7g131880 Pisum sativum HOM05D002825 ORTHO05D003824 4.1e-06 57.0 97 42.3
Cfa004457 Carpinus fangiana HOM05D002825 ORTHO05D003824 5.4e-06 56.6 92 44.6
Haze_10006 Corylus avellana HOM05D002825 ORTHO05D003824 7.0e-06 56.2 92 44.6
Aqoxy6G00055 Aquilegia oxysepala HOM05D002825 ORTHO05D003824 9.2e-06 55.8 392 30.6
Prupe.1G583600 Prunus persica HOM05D002825 ORTHO05D003824 9.2e-06 55.8 99 42.4


User provided reference genes

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