Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 0.0e+00 1633.6 809 100.0
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 0.0e+00 1527.7 809 93.9
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 0.0e+00 1504.2 809 91.7
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 0.0e+00 1499.6 810 91.6
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 0.0e+00 1474.1 810 89.5
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 0.0e+00 1459.9 810 89.0
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 0.0e+00 1410.6 814 85.9
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 0.0e+00 1410.6 814 85.9
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 0.0e+00 1397.1 813 85.5
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 0.0e+00 1393.6 813 85.2
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 0.0e+00 1390.9 815 85.3
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 0.0e+00 1372.1 813 84.9
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 0.0e+00 1360.9 839 82.2
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 0.0e+00 1336.6 838 80.7
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 0.0e+00 1257.3 815 76.3
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 3.2e-286 988.4 827 61.1
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 1.9e-278 962.6 803 59.5
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 2.4e-273 945.7 819 59.7
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 5.3e-273 944.5 819 58.1
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 7.2e-270 934.1 820 58.7
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 5.2e-268 927.9 826 57.3
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 5.2e-268 927.9 830 59.3
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 9.8e-267 923.7 804 58.2
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 1.3e-266 923.3 771 60.6
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 1.8e-265 919.5 812 57.5
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 4.1e-265 918.3 793 59.1
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 6.5e-263 911.0 793 57.8
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 1.4e-260 903.3 827 55.1
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 8.8e-260 900.6 782 56.6
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 1.2e-259 900.2 823 56.5
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 1.5e-259 899.8 827 54.3
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 1.3e-258 896.7 817 55.4
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 9.2e-257 890.6 823 55.0
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 7.8e-256 887.5 817 55.0
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 2.3e-255 885.9 832 56.0
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 2.9e-255 885.6 823 54.8
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 5.0e-255 884.8 803 56.5
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 1.5e-254 883.2 827 54.1
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 4.3e-254 881.7 740 60.8
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 7.3e-254 880.9 797 54.5
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 9.5e-254 880.6 818 54.8
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 3.6e-253 878.6 827 54.5
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 1.4e-252 876.7 827 53.8
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 1.8e-252 876.3 805 54.9
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 5.2e-252 874.8 826 53.1
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 8.9e-252 874.0 838 54.7
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 1.2e-251 873.6 826 55.0
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 2.6e-251 872.5 775 56.5
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 1.7e-250 869.8 828 53.3
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 3.7e-250 868.6 814 56.4
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 3.2e-249 865.5 830 53.9
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 5.4e-249 864.8 863 52.3
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 9.2e-249 864.0 829 54.0
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 1.2e-248 863.6 834 53.6
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 1.2e-248 863.6 807 54.4
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 1.3e-247 860.1 778 57.2
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 6.6e-247 857.8 798 53.8
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 1.9e-246 856.3 833 54.3
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 1.2e-245 853.6 777 55.0
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 4.0e-244 848.6 798 53.6
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 2.0e-243 846.3 792 54.4
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 3.4e-243 845.5 769 55.7
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 4.4e-243 845.1 809 54.0
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 7.5e-243 844.3 784 54.7
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 9.8e-243 844.0 838 53.1
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.3e-242 843.6 811 54.3
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 4.9e-242 841.6 801 53.3
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 1.9e-241 839.7 830 53.1
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.2e-240 837.0 780 54.5
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 4.6e-240 835.1 796 54.9
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 7.8e-240 834.3 777 55.7
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 1.0e-239 833.9 784 54.0
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 1.0e-239 833.9 844 52.0
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 5.0e-239 831.6 854 51.9
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 9.5e-238 827.4 776 53.2
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 2.8e-237 825.9 816 52.9
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 5.2e-236 821.6 826 52.8
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 6.8e-236 821.2 806 53.0
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 9.9e-235 817.4 801 52.2
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 2.2e-234 816.2 804 52.6
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 8.3e-234 814.3 762 53.3
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 1.1e-233 813.9 793 52.2
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 1.2e-232 810.4 772 54.3
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 7.8e-232 807.7 817 52.4
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 5.1e-231 805.1 748 54.8
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 5.1e-231 805.1 820 52.9
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 8.6e-231 804.3 795 52.5
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 1.6e-229 800.0 802 52.1
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 2.8e-229 799.3 853 49.4
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 4.7e-229 798.5 683 58.4
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 1.2e-227 793.9 777 51.7
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 4.4e-227 792.0 811 52.0
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 9.9e-227 790.8 831 51.5
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 2.9e-226 789.3 801 52.1
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 1.1e-225 787.3 773 52.3
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 1.1e-225 787.3 798 51.5
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 1.1e-225 787.3 833 48.0
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 2.3e-223 779.6 788 52.3
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 6.2e-221 771.5 731 52.4
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 5.2e-220 768.5 777 52.3
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 9.9e-219 764.2 716 55.6
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 7.1e-217 758.1 814 50.1
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 2.3e-215 753.1 728 52.6
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.4e-212 743.8 687 54.3
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 9.3e-209 731.1 836 48.3
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 3.3e-198 696.0 773 49.4
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 2.1e-197 693.3 821 45.3
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 4.8e-197 692.2 656 51.5
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 8.4e-194 681.4 675 51.4
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 1.6e-192 677.2 824 43.8
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 6.7e-191 671.8 878 42.7
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 2.9e-186 656.4 834 44.2
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 5.5e-185 652.1 951 41.1
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 5.5e-185 652.1 811 44.1
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.4e-180 637.5 616 52.4
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 4.7e-176 622.5 792 43.4
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 6.1e-176 622.1 521 58.5
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 9.1e-172 608.2 714 48.7
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 2.6e-171 606.7 792 42.6
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 2.1e-168 597.0 840 42.7
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 4.1e-164 582.8 577 51.3
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 1.3e-162 577.8 717 44.4
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 2.5e-161 573.5 685 45.7
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.3e-138 498.0 727 41.1
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 2.9e-133 480.3 529 47.4
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 8.3e-133 478.8 391 62.4
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 5.6e-129 466.1 348 66.7
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 1.4e-127 461.5 342 65.2
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 2.1e-120 437.6 443 50.3
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 2.3e-119 434.1 717 36.8
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 4.0e-103 380.2 430 46.0
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 1.6e-99 368.2 318 57.9
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 1.5e-97 361.7 781 30.2
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 9.9e-94 349.0 628 36.0
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 9.3e-92 342.4 864 29.1
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 2.4e-87 327.8 372 45.2
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 7.6e-78 296.2 397 42.1
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 7.1e-76 289.7 461 37.5
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 3.1e-71 274.2 354 40.7
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 3.0e-66 257.7 289 45.7
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 1.8e-63 248.4 254 49.2
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 7.4e-57 226.5 385 33.8
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 5.9e-54 216.9 200 55.5
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 1.4e-47 195.7 181 59.1
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.1e-44 186.0 177 57.1
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 1.4e-26 125.9 143 45.5
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 4.0e-26 124.4 117 44.4
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 2.4e-23 115.2 110 53.6
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.0e-18 99.8 123 39.8
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 3.4e-17 94.7 87 60.9
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 3.3e-12 78.2 112 38.4
arahy.Tifrunner.gnm1.ann1.YV6W0W Arachis hypogaea HOM05D000064 ORTHO05D001480 6.8e-10 70.5 52 57.7
arahy.Tifrunner.gnm1.ann1.I8C0YZ Arachis hypogaea HOM05D000064 ORTHO05D001480 2.6e-09 68.6 48 58.3
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 7.5e-09 67.0 79 43.0
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 1.7e-08 65.9 31 90.3
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 6.4e-08 63.9 66 42.4
Thecc.03G282200 Theobroma cacao HOM05D004502 ORTHO05D005579 1.6e-06 59.3 200 27.5
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 2.1e-06 58.9 56 46.4


User provided reference genes

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