Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G45070 Arabidopsis lyrata HOM05D007870 ORTHO05D010015 1.8e-24 115.5 80 100.0
BcaC02g07064 Brassica carinata HOM05D007870 ORTHO05D010015 1.5e-23 112.5 80 97.5
C04p71900 Brassica napus HOM05D007870 ORTHO05D010015 1.5e-23 112.5 80 97.5
BolC4t28688H Brassica oleracea HOM05D007870 ORTHO05D010015 1.5e-23 112.5 80 80.0
Carub.0004s2856 Capsella rubella HOM05D007870 ORTHO05D010015 3.4e-23 111.3 80 80.0
BraA04t18871Z Brassica rapa HOM05D007870 ORTHO05D010015 4.5e-23 110.9 80 93.8
A04p34100 Brassica napus HOM05D007870 ORTHO05D010015 1.0e-22 109.8 80 96.2
BcaB02g09002 Brassica carinata HOM05D007870 ORTHO05D010015 1.3e-22 109.4 80 78.8
A05p05830 Brassica napus HOM05D007870 ORTHO05D010015 1.3e-22 109.4 80 95.0
BolC4t22300H Brassica oleracea HOM05D007870 ORTHO05D010015 6.5e-22 107.1 80 82.5
Thhalv10001707m.g Eutrema salsugineum HOM05D007870 ORTHO05D010015 1.9e-21 105.5 80 76.2
Sp4g27930 Schrenkiella parvula HOM05D007870 ORTHO05D010015 1.9e-21 105.5 80 95.0
BraA05t19548Z Brassica rapa HOM05D007870 ORTHO05D010015 1.6e-20 102.4 80 92.5
Aa31LG10G15580 Aethionema arabicum HOM05D007870 ORTHO05D010015 3.6e-20 101.3 78 73.1
C04p06780 Brassica napus HOM05D007870 ORTHO05D010015 4.7e-20 100.9 80 92.5
BcaC02g12172 Brassica carinata HOM05D007870 ORTHO05D010015 2.0e-15 85.5 80 83.8
Os02g0824400 Oryza sativa ssp. japonica HOM05D007870 ORTHO05D010015 2.5e-13 78.6 80 58.8
arahy.Tifrunner.gnm1.ann1.LLY2P5 Arachis hypogaea HOM05D007870 ORTHO05D010015 3.2e-13 78.2 80 60.0
arahy.Tifrunner.gnm1.ann1.52J70V Arachis hypogaea HOM05D007870 ORTHO05D010015 9.4e-13 76.6 80 58.8
PGSC0003DMG400000161 Solanum tuberosum HOM05D007870 ORTHO05D010015 1.2e-12 76.3 81 56.8
Phvul.010G097100 Phaseolus vulgaris HOM05D007870 ORTHO05D010015 1.6e-12 75.9 80 60.0
Sopen01g038280 Solanum pennellii HOM05D007870 ORTHO05D010015 1.6e-12 75.9 82 56.1
unitig_8.g3804 Utricularia gibba HOM05D007870 ORTHO05D010015 2.3e-11 72.0 83 54.2
DCAR_025186 Daucus carota HOM05D007870 ORTHO05D010015 1.1e-10 69.7 83 53.0
CARHR141130 Cardamine hirsuta HOM05D007870 ORTHO05D010015 2.6e-10 68.6 80 73.8
QL08p049047 Quercus lobata HOM05D007870 ORTHO05D010015 4.4e-10 67.8 80 53.8
RcHm_v2.0_Chr1g0354641 Rosa chinensis HOM05D007870 ORTHO05D010015 1.7e-09 65.9 80 53.8
HPP92_014735 Vanilla planifolia HOM05D007870 ORTHO05D010015 3.7e-09 64.7 82 50.0
Zm00001eb190830 Zea mays HOM05D007870 ORTHO05D010015 6.3e-09 63.9 81 54.3
MELO3C006117.2 Cucumis melo HOM05D007870 ORTHO05D010015 1.1e-08 63.2 83 60.2
AT2G45860 Arabidopsis thaliana HOM05D007870 ORTHO05D010015 1.4e-08 62.8 80 71.2
Cc02_g37830 Coffea canephora HOM05D007870 ORTHO05D010015 1.4e-08 62.8 81 56.8
Peaxi162Scf00056g00013 Petunia axillaris HOM05D007870 ORTHO05D010015 1.8e-08 62.4 82 68.3
FvH4_7g13990 Fragaria vesca HOM05D007870 ORTHO05D010015 2.4e-08 62.0 80 51.2
Thecc.01G360900 Theobroma cacao HOM05D007870 ORTHO05D010015 2.4e-08 62.0 83 57.8
Oeu056365.2 Olea europaea HOM05D007870 ORTHO05D010015 4.1e-08 61.2 111 41.4
Psat4g155360 Pisum sativum HOM05D007870 ORTHO05D010015 5.3e-08 60.8 82 57.3
Duzib138G1310 Durio zibethinus HOM05D007870 ORTHO05D010015 1.2e-07 59.7 83 63.9
Lj3g0023390 Lotus japonicus HOM05D007870 ORTHO05D010015 1.2e-07 59.7 79 64.6
Manes.05G036400 Manihot esculenta HOM05D007870 ORTHO05D010015 1.2e-07 59.7 82 64.6
Lalb_Chr10g0097081 Lupinus albus HOM05D007870 ORTHO05D010015 3.5e-07 58.2 99 45.5
Dinv43804 Davidia involucrata HOM05D007870 ORTHO05D010015 5.9e-07 57.4 80 48.8
FAN06G1295 Fragaria x ananassa HOM05D007870 ORTHO05D010015 5.9e-07 57.4 80 48.8
FAN03G1806 Fragaria x ananassa HOM05D007870 ORTHO05D010015 1.3e-06 56.2 80 51.2
SGA_v2.0_scaffold4G02333 Striga asiatica HOM05D007870 ORTHO05D010015 1.3e-06 56.2 83 63.9
ATR0680G221 Amborella trichopoda HOM05D007870 ORTHO05D010015 1.7e-06 55.8 84 60.7
CDE09G0625 Ceratophyllum demersum HOM05D007870 ORTHO05D010015 2.2e-06 55.5 88 46.6
FAN01G0023 Fragaria x ananassa HOM05D007870 ORTHO05D010015 2.2e-06 55.5 80 52.5
FAN06G2504 Fragaria x ananassa HOM05D007870 ORTHO05D010015 2.2e-06 55.5 80 52.5
TWI23G0891 Tripterygium wilfordii HOM05D007870 ORTHO05D010015 2.2e-06 55.5 82 51.2
Nn6g33472 Nelumbo nucifera HOM05D007870 ORTHO05D010015 3.8e-06 54.7 82 52.4
Glyma.07G072200 Glycine max HOM05D007870 ORTHO05D010015 5.0e-06 54.3 82 54.9
PGR031G0106 Punica granatum HOM05D007870 ORTHO05D010015 5.0e-06 54.3 82 63.4
CDE11G0999 Ceratophyllum demersum HOM05D007870 ORTHO05D010015 8.5e-06 53.5 83 44.6
Lalb_Chr04g0256851 Lupinus albus HOM05D007870 ORTHO05D010015 8.5e-06 53.5 83 60.2


User provided reference genes

Program Settings