Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 0.0e+00 1557.3 909 100.0
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 0.0e+00 1438.7 910 93.5
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 0.0e+00 1262.3 909 84.0
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 0.0e+00 1256.5 915 83.5
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 0.0e+00 1239.2 911 82.3
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 0.0e+00 1154.8 913 77.4
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 0.0e+00 1134.8 908 75.6
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 0.0e+00 1096.3 913 74.6
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 0.0e+00 1091.3 899 76.5
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 0.0e+00 1090.5 899 76.5
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 0.0e+00 1088.2 903 75.1
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 1.2e-310 1069.7 889 75.5
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 1.3e-296 1023.1 918 71.0
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 6.6e-203 711.8 933 49.9
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 3.6e-201 706.1 883 49.6
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 3.7e-198 696.0 923 48.0
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 4.7e-193 679.1 924 51.4
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 2.9e-190 669.8 922 49.1
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 4.1e-189 666.0 892 48.4
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 3.9e-187 659.4 938 46.1
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 1.1e-186 657.9 896 49.8
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.1e-185 653.7 920 49.9
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 6.2e-185 652.1 848 51.8
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 2.3e-184 650.2 887 51.0
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 5.2e-184 649.0 928 47.7
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 6.8e-184 648.7 919 46.2
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 3.7e-182 642.9 896 50.8
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 3.7e-182 642.9 896 50.8
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 1.4e-181 641.0 935 45.7
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 4.1e-181 639.4 892 49.1
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 9.2e-181 638.3 890 46.9
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 3.5e-180 636.3 854 50.1
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 4.6e-180 636.0 892 50.4
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 1.3e-179 634.4 863 51.3
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.3e-179 634.4 782 51.0
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 1.7e-179 634.0 892 50.3
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 3.9e-179 632.9 874 52.1
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.1e-178 631.3 919 45.6
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 2.5e-178 630.2 881 51.9
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 7.3e-178 628.6 875 50.6
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 8.1e-177 625.2 915 48.0
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.4e-176 624.4 849 47.8
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 1.8e-176 624.0 846 50.0
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 2.6e-175 620.2 910 45.2
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 1.3e-174 617.8 915 45.0
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 2.9e-174 616.7 899 49.4
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 3.7e-174 616.3 885 49.4
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 1.1e-173 614.8 908 52.2
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 3.2e-173 613.2 910 52.4
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 3.2e-173 613.2 895 48.7
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 4.1e-173 612.8 909 52.6
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 7.1e-173 612.1 878 45.9
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 2.7e-172 610.1 889 47.8
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 7.8e-172 608.6 928 48.6
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 3.9e-171 606.3 856 49.9
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 5.1e-171 605.9 920 44.5
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 1.5e-170 604.4 914 51.4
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 4.3e-170 602.8 920 43.5
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 7.3e-170 602.1 925 45.3
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 1.6e-169 600.9 914 48.9
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 2.1e-169 600.5 953 47.1
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 3.1e-168 596.7 834 46.4
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 4.0e-168 596.3 894 46.0
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 5.2e-168 595.9 834 46.4
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 6.8e-168 595.5 904 49.3
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 6.8e-168 595.5 900 46.1
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 4.4e-167 592.8 872 45.9
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 5.8e-167 592.4 834 46.2
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 9.9e-167 591.7 938 46.4
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 2.9e-166 590.1 922 43.9
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 3.8e-166 589.7 851 45.6
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 4.9e-166 589.3 947 45.5
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 6.4e-166 589.0 873 45.5
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.4e-165 587.8 891 48.3
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 2.1e-164 583.9 821 49.3
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 1.5e-162 577.8 810 49.9
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 3.3e-162 576.6 936 42.2
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 2.1e-161 573.9 934 43.4
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 4.7e-161 572.8 977 41.5
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 1.4e-160 571.2 790 50.5
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 1.2e-159 568.2 916 43.1
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 1.3e-158 564.7 830 48.8
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 1.3e-158 564.7 894 46.5
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 3.8e-158 563.1 897 47.6
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 1.9e-157 560.8 866 47.6
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 2.5e-154 550.4 875 46.6
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 4.3e-154 549.7 913 46.7
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 7.3e-154 548.9 916 42.0
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 2.0e-151 540.8 918 44.7
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 4.5e-151 539.7 946 41.8
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 7.9e-148 528.9 874 49.5
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 1.0e-147 528.5 861 51.6
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 3.9e-147 526.6 900 45.7
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 1.5e-146 524.6 897 45.5
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 1.9e-146 524.2 882 42.1
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 5.6e-146 522.7 894 42.4
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 2.8e-145 520.4 958 43.0
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 1.1e-138 498.4 967 42.5
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 1.5e-138 498.0 765 46.1
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 5.6e-138 496.1 839 40.3
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 3.1e-136 490.3 919 43.0
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 3.8e-134 483.4 848 42.2
Os03g0127600 Oryza sativa ssp. japonica HOM05D004001 ORTHO05D004559 7.4e-130 469.2 898 38.5
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 1.1e-125 455.3 775 43.6
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 4.2e-125 453.4 471 55.4
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 5.3e-120 436.4 695 44.3
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 2.0e-119 434.5 889 42.1
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 1.1e-117 428.7 737 46.4
Zm00001eb403560 Zea mays HOM05D004001 ORTHO05D004559 1.3e-113 415.2 871 37.2
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 2.2e-113 414.5 438 51.8
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 2.6e-111 407.5 855 37.0
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 5.5e-109 399.8 852 41.7
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 6.7e-107 392.9 902 39.6
SEGI_05063 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 9.1e-88 329.3 876 34.9
HPP92_018394 Vanilla planifolia HOM05D004001 ORTHO05D004559 7.5e-82 309.7 623 39.6
DCAR_006877 Daucus carota HOM05D004001 ORTHO05D004559 1.2e-79 302.4 469 44.6
unitig_31.g34038 Utricularia gibba HOM05D004001 ORTHO05D004559 1.8e-75 288.5 640 34.7
AagrBONN_evm.TU.Sc2ySwM_362.1643 Anthoceros agrestis HOM05D004001 ORTHO05D004559 2.3e-70 271.6 528 41.5
SalBow3G1117 Salvia bowleyana HOM05D004001 ORTHO05D004559 3.7e-65 254.2 240 55.0
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.9e-64 251.9 533 39.4
Mapoly0005s0201 Marchantia polymorpha HOM05D004001 ORTHO05D004559 1.2e-63 249.2 563 45.3
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 9.5e-61 239.6 418 41.9
DCAR_006876 Daucus carota HOM05D004001 ORTHO05D004559 3.5e-55 221.1 406 42.1
VMungo1383G1498 Vigna mungo HOM05D004001 ORTHO05D004559 4.3e-53 214.2 416 42.5
Actinidia33460 Actinidia chinensis HOM05D004001 ORTHO05D004559 3.8e-49 201.1 181 55.8
CSS0022656 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 2.3e-46 191.8 400 39.0
vmacro13387 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 2.5e-45 188.3 146 61.6
Pp3c5_28010 Physcomitrium patens HOM05D004001 ORTHO05D004559 2.6e-42 178.3 928 30.1
VMungo1383G3044 Vigna mungo HOM05D004001 ORTHO05D004559 4.4e-42 177.6 168 53.6
Oeu005774.1 Olea europaea HOM05D004001 ORTHO05D004559 3.4e-34 151.4 214 46.7
Mapoly0048s0074 Marchantia polymorpha HOM05D004001 ORTHO05D004559 3.0e-30 138.3 224 38.8
SEGI_21780 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 5.3e-27 127.5 579 28.7
Hma1.2p1_1793F.1_g302630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 1.4e-24 119.4 97 60.8
Hma1.2p1_3528F.1_g336625 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 1.4e-24 119.4 97 60.8
Hma1.2p1_1793F.1_g302640 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 9.3e-24 116.7 103 59.2
CBR_g40168 Chara braunii HOM05D004001 ORTHO05D004559 2.7e-23 115.2 623 24.7
Cpa.g.sc18.133 Carica papaya HOM05D004001 ORTHO05D004559 1.3e-22 112.8 281 43.1
arahy.Tifrunner.gnm1.ann1.K6PBMX Arachis hypogaea HOM05D004001 ORTHO05D004559 3.3e-21 108.2 176 44.9
Rhsim07G0026800 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.1e-19 103.2 248 37.5
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 4.5e-18 97.8 174 40.2
arahy.Tifrunner.gnm1.ann1.DK59KL Arachis hypogaea HOM05D004001 ORTHO05D004559 5.0e-17 94.4 165 41.8
TWI56G0444 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.9e-16 92.4 159 37.1
arahy.Tifrunner.gnm1.ann1.LXQN6Z Arachis hypogaea HOM05D004001 ORTHO05D004559 4.2e-16 91.3 303 33.0
arahy.Tifrunner.gnm1.ann1.2V3ERI Arachis hypogaea HOM05D004001 ORTHO05D004559 1.2e-15 89.7 254 44.9
arahy.Tifrunner.gnm1.ann1.63QVJR Arachis hypogaea HOM05D004001 ORTHO05D004559 1.0e-14 86.7 254 44.1
BcaC07g37285 Brassica carinata HOM05D025803 ORTHO05D027242 1.8e-14 85.9 48 89.6
arahy.Tifrunner.gnm1.ann1.7YWS89 Arachis hypogaea HOM05D004001 ORTHO05D004559 9.7e-13 80.1 220 41.4
arahy.Tifrunner.gnm1.ann1.FJEF2G Arachis hypogaea HOM05D004001 ORTHO05D004559 2.2e-12 79.0 103 52.4
SMO147G0240 Selaginella moellendorffii HOM05D004001 ORTHO05D004559 1.4e-11 76.3 253 28.1
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 1.8e-11 75.9 120 40.8
vmacro22718 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 1.0e-09 70.1 65 60.0
Cpa.g.sc18.136 Carica papaya HOM05D004001 ORTHO05D004559 1.9e-08 65.9 72 52.8
arahy.Tifrunner.gnm1.ann1.Y88425 Arachis hypogaea HOM05D004001 ORTHO05D004559 5.5e-08 64.3 50 60.0
arahy.Tifrunner.gnm1.ann1.8X1DD2 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.8e-06 59.3 101 35.6
arahy.Tifrunner.gnm1.ann1.YQ72RL Arachis hypogaea HOM05D004001 ORTHO05D004559 1.8e-06 59.3 173 30.6
Psat6g122920 Pisum sativum HOM05D004001 ORTHO05D004559 1.8e-06 59.3 46 63.0


User provided reference genes

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