Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 1.7e-42 175.6 93 100.0
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 1.0e-39 166.4 91 96.7
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 2.3e-39 165.2 94 93.6
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 3.1e-39 164.9 93 91.4
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 6.8e-39 163.7 93 91.4
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 2.9e-37 158.3 93 88.2
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 1.6e-35 152.5 93 84.9
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 1.6e-35 152.5 93 84.9
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 1.6e-35 152.5 93 84.9
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 3.5e-35 151.4 93 83.9
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 3.5e-35 151.4 93 83.9
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 4.6e-35 151.0 93 84.9
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 6.0e-35 150.6 93 84.9
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 1.0e-34 149.8 93 84.9
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 2.3e-34 148.7 87 87.4
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 3.0e-34 148.3 93 83.9
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 3.0e-34 148.3 93 83.9
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 1.5e-33 146.0 93 80.6
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 1.5e-33 146.0 93 80.6
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 4.3e-33 144.4 93 83.9
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 7.3e-33 143.7 93 82.8
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 9.5e-33 143.3 93 78.5
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 9.5e-33 143.3 93 78.5
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 9.5e-33 143.3 93 78.5
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 2.7e-27 125.2 101 72.3
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 3.9e-18 94.7 101 60.4
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 5.1e-18 94.4 95 61.1
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 1.5e-17 92.8 89 61.8
AL5G43210 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 2.5e-17 92.0 95 60.0
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 3.3e-17 91.7 94 62.8
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 9.6e-17 90.1 99 59.6
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 1.6e-16 89.4 96 61.5
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 1.6e-16 89.4 86 58.1
A07p25250 Brassica napus HOM05D003683 ORTHO05D004143 2.1e-16 89.0 91 56.0
BraA07t30167Z Brassica rapa HOM05D003683 ORTHO05D004143 2.1e-16 89.0 91 54.9
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 8.1e-16 87.0 91 60.4
C06p26960 Brassica napus HOM05D003683 ORTHO05D004143 1.1e-15 86.7 100 53.0
BcaC08g45090 Brassica carinata HOM05D003683 ORTHO05D004143 2.6e-14 82.0 89 52.8
BolC6t37870H Brassica oleracea HOM05D003683 ORTHO05D004143 3.4e-14 81.6 102 52.0
C04p31700 Brassica napus HOM05D003683 ORTHO05D004143 1.7e-13 79.3 102 52.9
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 1.4e-12 76.3 97 50.5
BcaC08g45089 Brassica carinata HOM05D003683 ORTHO05D004143 9.3e-12 73.6 102 49.0
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 1.6e-11 72.8 87 54.0
THA.LOC104801993 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 2.1e-11 72.4 94 48.9
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 2.7e-11 72.0 69 63.8
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 3.5e-11 71.6 102 49.0
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 4.6e-11 71.2 102 50.0
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 6.0e-11 70.9 64 65.6
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 6.0e-11 70.9 92 51.1
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 6.0e-11 70.9 92 51.1
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 6.0e-11 70.9 92 51.1
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 7.8e-11 70.5 64 67.2
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.0e-10 70.1 88 48.9
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.3e-10 69.7 91 50.5
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.3e-10 69.7 88 48.9
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 3.0e-10 68.6 94 48.9
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 3.0e-10 68.6 92 50.0
BolC4t24719H Brassica oleracea HOM05D003683 ORTHO05D004143 3.9e-10 68.2 47 76.6
BraA04t15855Z Brassica rapa HOM05D003683 ORTHO05D004143 3.9e-10 68.2 47 76.6
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 5.1e-10 67.8 66 60.6
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 6.6e-10 67.4 91 50.5
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 6.6e-10 67.4 65 64.6
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 6.6e-10 67.4 92 53.3
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 1.1e-09 66.6 92 52.2
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.1e-09 66.6 77 51.9
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.1e-09 66.6 63 61.9
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.1e-09 66.6 79 54.4
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.1e-09 66.6 76 52.6
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.1e-09 66.6 95 50.5
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 1.5e-09 66.2 91 49.5
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 1.9e-09 65.9 86 53.5
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.9e-09 65.9 65 63.1
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.9e-09 65.9 65 63.1
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 1.9e-09 65.9 62 56.5
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 2.5e-09 65.5 95 46.3
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 3.3e-09 65.1 92 50.0
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 3.3e-09 65.1 63 63.5
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 3.3e-09 65.1 47 74.5
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 4.3e-09 64.7 64 56.2
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.3e-09 64.7 73 54.8
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 4.3e-09 64.7 103 42.7
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 4.3e-09 64.7 95 48.4
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 4.3e-09 64.7 61 60.7
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 5.6e-09 64.3 73 56.2
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 5.6e-09 64.3 99 44.4
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 5.6e-09 64.3 71 54.9
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 9.6e-09 63.5 98 44.9
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 9.6e-09 63.5 94 44.7
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 1.3e-08 63.2 101 44.6
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 1.3e-08 63.2 72 52.8
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 1.3e-08 63.2 95 49.5
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 1.3e-08 63.2 95 48.4
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 1.6e-08 62.8 93 46.2
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 1.6e-08 62.8 92 48.9
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 1.6e-08 62.8 94 44.7
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 1.6e-08 62.8 77 51.9
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 1.6e-08 62.8 77 51.9
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 2.1e-08 62.4 70 52.9
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 2.8e-08 62.0 77 53.2
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 2.8e-08 62.0 69 59.4
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 3.6e-08 61.6 82 48.8
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 3.6e-08 61.6 74 54.1
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 3.6e-08 61.6 89 48.3
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 4.8e-08 61.2 93 47.3
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 4.8e-08 61.2 88 46.6
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 4.8e-08 61.2 69 58.0
DCAR_008565 Daucus carota HOM05D003683 ORTHO05D004143 6.2e-08 60.8 52 63.5
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 6.2e-08 60.8 49 65.3
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 6.2e-08 60.8 46 73.9
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 6.2e-08 60.8 65 58.5
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 8.1e-08 60.5 76 51.3
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 8.1e-08 60.5 63 60.3
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 8.1e-08 60.5 67 55.2
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 1.1e-07 60.1 91 46.2
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 1.1e-07 60.1 78 51.3
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 1.1e-07 60.1 75 56.0
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.4e-07 59.7 73 50.7
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.4e-07 59.7 69 53.6
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.4e-07 59.7 69 53.6
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 1.4e-07 59.7 79 50.6
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 1.4e-07 59.7 89 44.9
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 1.4e-07 59.7 105 44.8
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 1.4e-07 59.7 60 56.7
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 1.8e-07 59.3 65 56.9
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.8e-07 59.3 92 48.9
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 1.8e-07 59.3 67 58.2
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 2.4e-07 58.9 66 53.0
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 2.4e-07 58.9 64 56.2
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 2.4e-07 58.9 63 57.1
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 3.1e-07 58.5 69 53.6
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 3.1e-07 58.5 65 56.9
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 4.0e-07 58.2 64 56.2
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 5.3e-07 57.8 64 53.1
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 6.9e-07 57.4 92 46.7
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 6.9e-07 57.4 75 53.3
HanXRQChr17g0557021 Helianthus annuus HOM05D003683 ORTHO05D004143 9.0e-07 57.0 100 43.0
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 9.0e-07 57.0 90 43.3
Solyc01g091490.3 Solanum lycopersicum HOM05D003683 ORTHO05D004143 9.0e-07 57.0 66 53.0
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 9.0e-07 57.0 67 52.2
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 1.2e-06 56.6 86 45.3
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 1.2e-06 56.6 97 41.2
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 1.2e-06 56.6 98 50.0
PGSC0003DMG400012753 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.2e-06 56.6 66 53.0
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 1.5e-06 56.2 64 51.6
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.5e-06 56.2 70 51.4
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 1.5e-06 56.2 98 43.9
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 1.5e-06 56.2 61 55.7
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 2.0e-06 55.8 64 54.7
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 2.6e-06 55.5 47 66.0
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.6e-06 55.5 66 53.0
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 2.6e-06 55.5 71 47.9
HanXRQChr16g0521651 Helianthus annuus HOM05D003683 ORTHO05D004143 2.6e-06 55.5 56 58.9
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 2.6e-06 55.5 94 42.6
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 3.4e-06 55.1 45 66.7
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 3.4e-06 55.1 65 52.3
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 4.4e-06 54.7 68 50.0
VMungo1383G1500 Vigna mungo HOM05D003683 ORTHO05D004143 4.4e-06 54.7 75 50.7
Phvul.008G075300 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 5.8e-06 54.3 75 50.7
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 5.8e-06 54.3 63 54.0
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 5.8e-06 54.3 63 52.4
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 7.6e-06 53.9 85 49.4
PGR031G2056 Punica granatum HOM05D003683 ORTHO05D004143 9.9e-06 53.5 81 46.9


User provided reference genes

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