Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 3.2e-220 768.1 383 100.0
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 3.2e-207 724.9 384 95.1
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 2.3e-194 682.2 384 89.6
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 2.3e-194 682.2 384 87.5
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 3.5e-190 668.3 387 86.6
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 6.0e-190 667.5 385 87.0
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 1.1e-188 663.3 386 86.0
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 7.3e-188 660.6 387 85.3
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 1.2e-187 659.8 386 85.5
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 1.3e-181 639.8 385 82.9
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 1.3e-181 639.8 385 82.9
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 1.9e-167 592.8 390 77.2
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 1.5e-148 530.0 392 67.1
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 9.6e-148 527.3 408 65.2
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 2.1e-147 526.2 391 66.5
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 8.2e-147 524.2 408 65.0
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.1e-146 523.9 408 64.5
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 2.4e-146 522.7 389 69.7
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 6.9e-146 521.2 391 66.5
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 9.0e-146 520.8 409 64.5
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 9.0e-146 520.8 391 66.2
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 1.2e-145 520.4 394 66.2
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 5.8e-145 518.1 375 68.8
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 5.8e-145 518.1 393 66.9
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.0e-144 517.3 390 66.2
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 1.7e-144 516.5 390 66.7
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 2.2e-144 516.2 393 66.7
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 2.2e-144 516.2 390 66.2
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 2.2e-144 516.2 392 67.3
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 5.0e-144 515.0 392 65.8
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 5.0e-144 515.0 384 66.9
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 5.0e-144 515.0 386 65.8
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 8.4e-144 514.2 390 65.9
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 3.2e-143 512.3 386 65.3
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 4.2e-143 511.9 357 72.3
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 7.2e-143 511.1 390 65.1
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 7.2e-143 511.1 386 65.8
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 7.2e-143 511.1 386 65.5
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 9.3e-143 510.8 391 65.5
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 2.7e-142 509.2 386 64.8
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 3.5e-142 508.8 393 65.4
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 1.0e-141 507.3 389 65.6
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.0e-141 507.3 412 62.4
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 1.3e-141 506.9 387 65.4
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 2.3e-141 506.1 391 65.5
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 3.9e-141 505.4 389 66.3
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 3.9e-141 505.4 392 66.1
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 5.1e-141 505.0 386 64.5
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 8.7e-141 504.2 396 64.9
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 8.7e-141 504.2 386 64.2
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 1.5e-140 503.4 389 64.5
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 1.9e-140 503.1 396 64.9
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 1.9e-140 503.1 399 65.2
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 1.9e-140 503.1 387 64.1
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 2.5e-140 502.7 393 65.4
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 4.3e-140 501.9 390 65.4
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 1.6e-139 500.0 391 63.9
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 3.7e-139 498.8 385 63.9
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 3.7e-139 498.8 344 71.2
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 4.8e-139 498.4 394 64.2
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 4.8e-139 498.4 414 62.6
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 8.2e-139 497.7 390 64.4
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 1.4e-138 496.9 391 63.7
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 4.1e-138 495.4 406 62.8
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 4.1e-138 495.4 343 70.0
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 5.3e-138 495.0 390 64.1
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 9.0e-138 494.2 390 64.6
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 1.5e-137 493.4 391 64.2
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 1.5e-137 493.4 390 64.1
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 1.3e-136 490.3 390 64.4
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 1.7e-136 490.0 379 65.2
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 6.5e-136 488.0 373 64.9
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 8.5e-136 487.6 391 64.5
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 1.4e-135 486.9 387 61.5
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 1.2e-134 483.8 344 68.3
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 2.7e-134 482.6 391 62.7
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 6.1e-134 481.5 387 61.2
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 2.3e-133 479.6 391 63.9
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 1.1e-132 477.2 344 67.2
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 1.7e-131 473.4 378 65.1
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 6.3e-131 471.5 391 61.9
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 3.8e-128 462.2 387 61.0
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 2.5e-127 459.5 349 66.5
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 6.1e-126 454.9 380 64.2
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 7.9e-126 454.5 347 63.4
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 3.9e-125 452.2 391 60.4
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 2.0e-124 449.9 343 65.6
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 2.6e-124 449.5 414 57.2
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 2.6e-124 449.5 377 60.5
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 7.4e-124 448.0 357 62.5
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 9.1e-122 441.0 392 59.9
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 6.5e-120 434.9 348 64.1
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 8.8e-117 424.5 425 54.4
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 9.7e-116 421.0 373 58.7
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 8.2e-115 417.9 338 64.8
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 1.3e-112 410.6 263 74.5
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 2.1e-110 403.3 317 64.7
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 3.0e-109 399.4 200 96.0
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 1.8e-106 390.2 342 58.2
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 1.6e-105 387.1 195 92.8
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 1.6e-102 377.1 251 70.5
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 1.3e-99 367.5 306 62.4
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 4.3e-95 352.4 382 49.7
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 2.4e-90 336.7 274 60.9
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 8.6e-88 328.2 248 65.3
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 9.5e-79 298.1 326 48.5
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 1.2e-76 291.2 163 81.0
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 3.4e-76 289.7 184 83.7
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 1.3e-72 277.7 280 48.6
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 9.2e-66 255.0 187 64.7
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 1.2e-65 254.6 224 61.2
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 9.6e-63 245.0 218 57.8
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.4e-58 231.1 130 78.5
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 4.6e-57 226.1 215 48.8
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 1.1e-55 221.5 201 60.7
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 4.9e-51 206.1 346 36.4
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 1.1e-47 194.9 113 75.2
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 5.1e-40 169.5 132 60.6
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 6.7e-40 169.1 132 60.6
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 4.3e-39 166.4 131 59.5
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 1.4e-37 161.4 135 62.2
Gohir.A08G135200 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.5e-31 141.4 161 50.3
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 1.3e-30 138.3 197 40.6
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 1.8e-29 134.4 229 34.9
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 5.3e-29 132.9 84 72.6
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 8.5e-27 125.6 183 44.3
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 5.1e-24 116.3 63 82.5
Gohir.A08G135550 Gossypium hirsutum HOM05D005612 ORTHO05D007014 8.7e-24 115.5 97 63.9
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 4.3e-23 113.2 74 68.9
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 5.7e-23 112.8 108 52.8
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 2.5e-18 97.4 72 68.1
MBI14_g08143_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 1.2e-17 95.1 96 54.2
MD15G1255900 Malus domestica HOM05D001392 ORTHO05D036605 5.7e-15 86.3 45 82.2
Os06g0571300 Oryza sativa ssp. japonica HOM05D005612 ORTHO05D007014 9.1e-13 79.0 90 53.3
Medtr8g102042 Medicago truncatula HOM05D005612 ORTHO05D007014 1.2e-12 78.6 62 58.1
Lalb_Chr08g0243441 Lupinus albus HOM05D005612 ORTHO05D007014 4.5e-12 76.6 45 71.1
Dinv39084 Davidia involucrata HOM05D005612 ORTHO05D007014 1.4e-08 65.1 105 34.3
Lalb_Chr16g0388221 Lupinus albus HOM05D005612 ORTHO05D007014 4.4e-07 60.1 35 65.7


User provided reference genes

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