Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G43900 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 1.8e-89 332.8 169 100.0
AT2G44820 Arabidopsis thaliana HOM05D004872 ORTHO05D006050 1.7e-76 289.7 170 87.6
Carub.0004s2739 Capsella rubella HOM05D004872 ORTHO05D006050 2.1e-66 256.1 171 78.9
Thhalv10019047m.g Eutrema salsugineum HOM05D004872 ORTHO05D006050 1.8e-62 243.0 171 76.6
CARHR140030 Cardamine hirsuta HOM05D004872 ORTHO05D006050 3.1e-62 242.3 163 77.9
AL7G43510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 9.4e-59 230.7 162 77.2
Sp4g26910 Schrenkiella parvula HOM05D004872 ORTHO05D006050 4.4e-56 221.9 168 72.6
BcaB02g10512 Brassica carinata HOM05D004872 ORTHO05D006050 7.7e-53 211.1 167 68.9
Aa31LG1G26360 Aethionema arabicum HOM05D004872 ORTHO05D006050 1.3e-52 210.3 162 71.0
Sp2g10980 Schrenkiella parvula HOM05D004872 ORTHO05D006050 3.8e-52 208.8 155 72.9
BraA05t20203Z Brassica rapa HOM05D004872 ORTHO05D006050 3.6e-50 202.2 169 66.9
A05p12650 Brassica napus HOM05D004872 ORTHO05D006050 4.7e-50 201.8 170 67.6
A05p04990 Brassica napus HOM05D004872 ORTHO05D006050 6.1e-50 201.4 170 65.3
BcaC02g12267 Brassica carinata HOM05D004872 ORTHO05D006050 3.0e-49 199.1 146 71.9
C04p05820 Brassica napus HOM05D004872 ORTHO05D006050 3.0e-49 199.1 146 71.9
BolC4t22211H Brassica oleracea HOM05D004872 ORTHO05D006050 6.8e-49 198.0 173 63.6
BraA05t19473Z Brassica rapa HOM05D004872 ORTHO05D006050 1.2e-48 197.2 146 71.2
BolC4t23202H Brassica oleracea HOM05D004872 ORTHO05D006050 1.8e-46 189.9 148 70.3
BcaB02g08868 Brassica carinata HOM05D004872 ORTHO05D006050 9.2e-46 187.6 169 61.5
THA.LOC104816943 Tarenaya hassleriana HOM05D004872 ORTHO05D006050 2.0e-45 186.4 155 66.5
BcaC02g11364 Brassica carinata HOM05D004872 ORTHO05D006050 1.2e-42 177.2 164 65.2
Aa31LG9G10050 Aethionema arabicum HOM05D004872 ORTHO05D006050 2.6e-40 169.5 169 60.4
Atru.chr4.2930 Acer truncatum HOM05D004872 ORTHO05D006050 8.3e-39 164.5 162 56.2
Cpa.g.sc34.184 Carica papaya HOM05D004872 ORTHO05D006050 1.1e-38 164.1 168 53.6
Duzib150G1163 Durio zibethinus HOM05D004872 ORTHO05D006050 4.6e-37 158.7 157 54.8
Manes.09G068000 Manihot esculenta HOM05D004872 ORTHO05D006050 1.3e-36 157.1 148 54.7
CiPaw.14G110500 Carya illinoinensis HOM05D004872 ORTHO05D006050 2.3e-36 156.4 135 55.6
CANSAT54G2026 Cannabis sativa HOM05D004872 ORTHO05D006050 6.6e-36 154.8 166 50.0
Prupe.7G012800 Prunus persica HOM05D004872 ORTHO05D006050 6.6e-36 154.8 143 56.6
Thecc.09G254600 Theobroma cacao HOM05D004872 ORTHO05D006050 1.1e-35 154.1 153 52.9
QL01p016491 Quercus lobata HOM05D004872 ORTHO05D006050 1.5e-35 153.7 126 59.5
QL01p024148 Quercus lobata HOM05D004872 ORTHO05D006050 1.5e-35 153.7 126 59.5
RcHm_v2.0_Chr5g0046151 Rosa chinensis HOM05D004872 ORTHO05D006050 1.5e-35 153.7 163 54.0
Sabra13G0065000 Salix brachista HOM05D004872 ORTHO05D006050 1.9e-35 153.3 174 53.4
PGSC0003DMG400003977 Solanum tuberosum HOM05D004872 ORTHO05D006050 2.5e-35 152.9 148 58.8
Peaxi162Scf00025g02826 Petunia axillaris HOM05D004872 ORTHO05D006050 3.3e-35 152.5 138 59.4
Prupe.4G268800 Prunus persica HOM05D004872 ORTHO05D006050 4.3e-35 152.1 164 50.0
FAN25G2824 Fragaria x ananassa HOM05D004872 ORTHO05D006050 5.6e-35 151.8 163 54.0
Gohir.D09G105300 Gossypium hirsutum HOM05D004872 ORTHO05D006050 5.6e-35 151.8 145 55.9
FvH4_3g25170 Fragaria vesca HOM05D004872 ORTHO05D006050 7.3e-35 151.4 163 54.0
DCAR_030961 Daucus carota HOM05D004872 ORTHO05D006050 9.5e-35 151.0 168 53.0
CAN.G1549.27 Capsicum annuum HOM05D004872 ORTHO05D006050 1.2e-34 150.6 157 55.4
COL.COLO4_24934 Corchorus olitorius HOM05D004872 ORTHO05D006050 1.2e-34 150.6 136 58.1
Gohir.A09G108400 Gossypium hirsutum HOM05D004872 ORTHO05D006050 1.2e-34 150.6 155 53.5
SGA_v2.0_scaffold144G35815 Striga asiatica HOM05D004872 ORTHO05D006050 2.1e-34 149.8 158 53.8
MSTRG.1742 Avicennia marina HOM05D004872 ORTHO05D006050 2.8e-34 149.4 118 65.3
arahy.Tifrunner.gnm1.ann1.U00P2R Arachis hypogaea HOM05D004872 ORTHO05D006050 3.6e-34 149.1 149 53.0
Dinv22205 Davidia involucrata HOM05D004872 ORTHO05D006050 3.6e-34 149.1 137 55.5
Potri.013G075500 Populus trichocarpa HOM05D004872 ORTHO05D006050 3.6e-34 149.1 139 58.3
GSVIVG01037356001 Vitis vinifera HOM05D004872 ORTHO05D006050 3.6e-34 149.1 166 51.8
Cc11_g04500 Coffea canephora HOM05D004872 ORTHO05D006050 6.2e-34 148.3 145 55.2
Ciclev10006059m.g Citrus clementina HOM05D004872 ORTHO05D006050 1.4e-33 147.1 153 51.6
Gorai.006G122300 Gossypium raimondii HOM05D004872 ORTHO05D006050 1.8e-33 146.7 146 55.5
TPR.G26917 Trifolium pratense HOM05D004872 ORTHO05D006050 1.8e-33 146.7 177 50.3
TPR.G29301 Trifolium pratense HOM05D004872 ORTHO05D006050 1.8e-33 146.7 177 50.8
ECA233G5422 Erigeron canadensis HOM05D004872 ORTHO05D006050 2.3e-33 146.4 126 57.9
Lsat_1_v5_gn_3_110040 Lactuca sativa HOM05D004872 ORTHO05D006050 2.3e-33 146.4 156 52.6
Rhsim07G0167900 Rhododendron simsii HOM05D004872 ORTHO05D006050 2.3e-33 146.4 160 51.9
CiPaw.13G148000 Carya illinoinensis HOM05D004872 ORTHO05D006050 3.1e-33 146.0 172 47.7
arahy.Tifrunner.gnm1.ann1.EX2XSN Arachis hypogaea HOM05D004872 ORTHO05D006050 4.0e-33 145.6 149 51.7
Psat2g130480 Pisum sativum HOM05D004872 ORTHO05D006050 5.2e-33 145.2 173 49.7
Cfa009914 Carpinus fangiana HOM05D004872 ORTHO05D006050 6.8e-33 144.8 139 52.5
Lsat_1_v5_gn_8_24740 Lactuca sativa HOM05D004872 ORTHO05D006050 8.9e-33 144.4 167 52.7
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 1.5e-32 143.7 139 52.5
Medtr7g096840 Medicago truncatula HOM05D004872 ORTHO05D006050 1.5e-32 143.7 172 48.8
Nn8g39701 Nelumbo nucifera HOM05D004872 ORTHO05D006050 2.0e-32 143.3 155 51.6
Lj6g0009628 Lotus japonicus HOM05D004872 ORTHO05D006050 2.6e-32 142.9 157 50.3
Lj6g0013181 Lotus japonicus HOM05D004872 ORTHO05D006050 2.6e-32 142.9 157 50.3
Nitab4.5_0002138g0010 Nicotiana tabacum HOM05D004872 ORTHO05D006050 2.6e-32 142.9 139 52.5
MD12G1010900 Malus domestica HOM05D004872 ORTHO05D006050 3.4e-32 142.5 159 49.7
Nn2g15815 Nelumbo nucifera HOM05D004872 ORTHO05D006050 4.4e-32 142.1 155 51.0
Glyma.01G027700 Glycine max HOM05D004872 ORTHO05D006050 5.8e-32 141.7 150 52.7
Manes.08G069866 Manihot esculenta HOM05D004872 ORTHO05D006050 9.8e-32 141.0 152 49.3
PSO541G2017 Papaver somniferum HOM05D004872 ORTHO05D006050 1.7e-31 140.2 140 52.9
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 1.7e-31 140.2 131 56.5
Glyma.08G136100 Glycine max HOM05D004872 ORTHO05D006050 2.2e-31 139.8 163 48.5
SalBow6G3136 Salvia bowleyana HOM05D004872 ORTHO05D006050 2.9e-31 139.4 142 54.2
TAR633G0253 Trochodendron aralioides HOM05D004872 ORTHO05D006050 2.9e-31 139.4 146 52.7
HanXRQChr08g0217181 Helianthus annuus HOM05D004872 ORTHO05D006050 3.7e-31 139.0 146 54.1
Sc11g0003110 Simmondsia chinensis HOM05D004872 ORTHO05D006050 3.7e-31 139.0 146 52.7
PSO017G2452 Papaver somniferum HOM05D004872 ORTHO05D006050 8.3e-31 137.9 142 52.8
PSO017G5814 Papaver somniferum HOM05D004872 ORTHO05D006050 8.3e-31 137.9 142 52.8
PSO529G0002 Papaver somniferum HOM05D004872 ORTHO05D006050 8.3e-31 137.9 142 52.8
PSO591G0356 Papaver somniferum HOM05D004872 ORTHO05D006050 8.3e-31 137.9 142 52.8
PSO705G0001 Papaver somniferum HOM05D004872 ORTHO05D006050 8.3e-31 137.9 142 52.8
PSO591G0248 Papaver somniferum HOM05D004872 ORTHO05D006050 1.4e-30 137.1 142 52.8
arahy.Tifrunner.gnm1.ann1.K1U5S9 Arachis hypogaea HOM05D004872 ORTHO05D006050 3.2e-30 136.0 176 45.5
CSS0006428 Camellia sinensis var. sinensis HOM05D004872 ORTHO05D006050 4.1e-30 135.6 142 50.7
FAN11G3172 Fragaria x ananassa HOM05D004872 ORTHO05D006050 5.4e-30 135.2 131 57.3
MELO3C014544.2 Cucumis melo HOM05D004872 ORTHO05D006050 7.1e-30 134.8 144 50.7
Eucgr.J02277 Eucalyptus grandis HOM05D004872 ORTHO05D006050 7.1e-30 134.8 145 55.9
Solyc11g005570.2 Solanum lycopersicum HOM05D004872 ORTHO05D006050 7.1e-30 134.8 148 53.4
Sopen11g001540 Solanum pennellii HOM05D004872 ORTHO05D006050 7.1e-30 134.8 148 53.4
Hma1.2p1_0299F.1_g117840 Hydrangea macrophylla HOM05D004872 ORTHO05D006050 9.2e-30 134.4 148 50.7
ClCG02G022680 Citrullus lanatus HOM05D004872 ORTHO05D006050 2.1e-29 133.3 155 49.0
Lalb_Chr04g0249071 Lupinus albus HOM05D004872 ORTHO05D006050 2.1e-29 133.3 167 46.1
AUR62000220 Chenopodium quinoa HOM05D004872 ORTHO05D006050 2.7e-29 132.9 132 53.8
CsaV3_6G038800 Cucumis sativus L. HOM05D004872 ORTHO05D006050 3.5e-29 132.5 169 47.3
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 6.0e-29 131.7 119 54.6
HanXRQChr10g0315331 Helianthus annuus HOM05D004872 ORTHO05D006050 1.7e-28 130.2 147 47.6
Aqoxy1G01418 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 2.3e-28 129.8 128 53.1
TWI31G0308 Tripterygium wilfordii HOM05D004872 ORTHO05D006050 3.9e-28 129.0 153 47.7
Nitab4.5_0001582g0110 Nicotiana tabacum HOM05D004872 ORTHO05D006050 6.6e-28 128.3 100 65.0
VMungo0251G0214 Vigna mungo HOM05D004872 ORTHO05D006050 8.6e-28 127.9 156 46.8
EL10Ac4g10086 Beta vulgaris HOM05D004872 ORTHO05D006050 1.1e-27 127.5 115 58.3
Migut.E01400 Erythranthe guttata HOM05D004872 ORTHO05D006050 1.1e-27 127.5 146 46.6
Aqoxy72s001 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.5e-27 127.1 128 52.3
CDE05G2894 Ceratophyllum demersum HOM05D004872 ORTHO05D006050 1.5e-27 127.1 123 54.5
arahy.Tifrunner.gnm1.ann1.R4J47E Arachis hypogaea HOM05D004872 ORTHO05D006050 2.5e-27 126.3 178 42.7
Phvul.002G255800 Phaseolus vulgaris HOM05D004872 ORTHO05D006050 2.5e-27 126.3 159 45.3
C04p16540 Brassica napus HOM05D004872 ORTHO05D006050 3.3e-27 125.9 192 46.4
AUR62006565 Chenopodium quinoa HOM05D004872 ORTHO05D006050 3.3e-27 125.9 125 52.8
Aqoxy7G03169 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 4.3e-27 125.6 128 50.0
Aqoxy2G00467 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.2e-26 124.0 159 45.3
Ah.04g159640 Amaranthus hybridus HOM05D004872 ORTHO05D006050 1.6e-26 123.6 132 51.5
Hund07423 Selenicereus undatus HOM05D004872 ORTHO05D006050 2.8e-26 122.9 140 50.7
Oeu026038.1 Olea europaea HOM05D004872 ORTHO05D006050 8.1e-26 121.3 105 61.9
Sed0007255 Sechium edule HOM05D004872 ORTHO05D006050 2.3e-25 119.8 150 47.3
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 2.3e-25 119.8 146 45.9
Oeu040527.1 Olea europaea HOM05D004872 ORTHO05D006050 3.1e-25 119.4 123 55.3
ECA236G0590 Erigeron canadensis HOM05D004872 ORTHO05D006050 2.6e-24 116.3 125 52.8
Os01g0224500 Oryza sativa ssp. japonica HOM05D004872 ORTHO05D006050 7.6e-24 114.8 168 44.6
vmacro05825 Vaccinium macrocarpon HOM05D004872 ORTHO05D006050 1.7e-23 113.6 162 43.2
MBI17_g09534_MAGBIO Magnolia biondii HOM05D004872 ORTHO05D006050 6.4e-23 111.7 161 41.6
CiPaw.13G148200 Carya illinoinensis HOM05D004872 ORTHO05D006050 4.1e-22 109.0 139 47.5
ATR0665G028 Amborella trichopoda HOM05D004872 ORTHO05D006050 6.0e-21 105.1 123 45.5
AL225U10020 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 6.0e-21 105.1 75 77.3
Zm00001eb192850 Zea mays HOM05D004872 ORTHO05D006050 6.6e-20 101.7 167 38.3
Sc11g0003120 Simmondsia chinensis HOM05D004872 ORTHO05D006050 4.0e-17 92.4 100 53.0
arahy.Tifrunner.gnm1.ann1.X2Q8UN Arachis hypogaea HOM05D004872 ORTHO05D006050 2.6e-16 89.7 114 42.1
PGR102G1802 Punica granatum HOM05D004872 ORTHO05D006050 4.9e-15 85.5 170 35.3
Zm00001eb281550 Zea mays HOM05D004872 ORTHO05D006050 4.9e-15 85.5 138 39.9
Pp3c23_7100 Physcomitrium patens HOM05D004872 ORTHO05D006050 1.6e-13 80.5 148 35.1
Mapoly0036s0026 Marchantia polymorpha HOM05D004872 ORTHO05D006050 2.7e-13 79.7 176 33.0
SEGI_13451 Sequoiadendron giganteum HOM05D004872 ORTHO05D006050 8.7e-12 74.7 133 33.8
TPR.G14060 Trifolium pratense HOM05D004872 ORTHO05D006050 1.9e-11 73.6 113 46.0
AagrBONN_evm.TU.Sc2ySwM_362.236 Anthoceros agrestis HOM05D004872 ORTHO05D006050 1.4e-09 67.4 146 30.1
Atru.chr1.3406 Acer truncatum HOM05D004872 ORTHO05D006050 4.0e-09 65.9 82 46.3
Zm00001eb416880 Zea mays HOM05D004872 ORTHO05D006050 3.4e-08 62.8 106 39.6
HanXRQChr17g0569331 Helianthus annuus HOM05D004872 ORTHO05D006050 3.8e-07 59.3 80 42.5
Aqoxy7G03168 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 6.4e-07 58.5 106 33.0
Ca_21429_v3 Cicer arietinum L. HOM05D004872 ORTHO05D006050 7.1e-06 55.1 84 41.7


User provided reference genes

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