Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Aa31LG1G26170 Aethionema arabicum HOM05D001380 ORTHO05D001912 2.5e-13 77.4 37 100.0
AL4G43660 Arabidopsis lyrata HOM05D001380 ORTHO05D001912 2.5e-13 77.4 37 100.0
AT2G44620 Arabidopsis thaliana HOM05D001380 ORTHO05D001912 2.5e-13 77.4 37 100.0
CARHR139840 Cardamine hirsuta HOM05D001380 ORTHO05D001912 2.5e-13 77.4 37 100.0
Thhalv10001683m.g Eutrema salsugineum HOM05D001380 ORTHO05D001912 2.5e-13 77.4 37 100.0
Sp4g26710 Schrenkiella parvula HOM05D001380 ORTHO05D001912 2.5e-13 77.4 37 100.0
A05p04770 Brassica napus HOM05D001380 ORTHO05D001912 7.4e-13 75.9 37 97.3
BolC4t22188H Brassica oleracea HOM05D001380 ORTHO05D001912 7.4e-13 75.9 37 97.3
BraA05t19453Z Brassica rapa HOM05D001380 ORTHO05D001912 7.4e-13 75.9 37 97.3
Carub.0004s2717 Capsella rubella HOM05D001380 ORTHO05D001912 9.7e-13 75.5 37 97.3
Migut.B01485 Erythranthe guttata HOM05D001380 ORTHO05D001912 9.7e-13 75.5 37 97.3
Sed0020181 Sechium edule HOM05D001380 ORTHO05D001912 9.7e-13 75.5 37 94.6
ECA234G0322 Erigeron canadensis HOM05D001380 ORTHO05D001912 1.3e-12 75.1 37 94.6
HanXRQChr12g0383301 Helianthus annuus HOM05D001380 ORTHO05D001912 1.3e-12 75.1 37 94.6
Lsat_1_v5_gn_4_38561 Lactuca sativa HOM05D001380 ORTHO05D001912 1.3e-12 75.1 37 94.6
Oeu024388.1 Olea europaea HOM05D001380 ORTHO05D001912 1.3e-12 75.1 37 94.6
DCAR_025023 Daucus carota HOM05D001380 ORTHO05D001912 1.7e-12 74.7 37 91.9
MELO3C006265.2 Cucumis melo HOM05D001380 ORTHO05D001912 2.2e-12 74.3 37 91.9
CsaV3_3G010410 Cucumis sativus L. HOM05D001380 ORTHO05D001912 2.2e-12 74.3 37 91.9
BcaB01g03303 Brassica carinata HOM05D002770 ORTHO05D003011 2.8e-12 73.9 37 94.6
BcaB02g08838 Brassica carinata HOM05D001380 ORTHO05D001912 2.8e-12 73.9 37 94.6
BcaC02g12289 Brassica carinata HOM05D001380 ORTHO05D001912 2.8e-12 73.9 37 94.6
A03p24830 Brassica napus HOM05D001380 ORTHO05D001912 2.8e-12 73.9 37 94.6
C03p29610 Brassica napus HOM05D001380 ORTHO05D001912 2.8e-12 73.9 37 94.6
C04p05580 Brassica napus HOM05D001380 ORTHO05D001912 2.8e-12 73.9 37 94.6
BolC3t15310H Brassica oleracea HOM05D001380 ORTHO05D001912 2.8e-12 73.9 37 94.6
BraA03t11690Z Brassica rapa HOM05D001380 ORTHO05D001912 2.8e-12 73.9 37 94.6
SGA_v2.0_scaffold52G19269 Striga asiatica HOM05D001380 ORTHO05D001912 2.8e-12 73.9 37 89.2
Cpa.g.sc52.67 Carica papaya HOM05D001380 ORTHO05D001912 3.7e-12 73.6 37 89.2
DCAR_015779 Daucus carota HOM05D001380 ORTHO05D001912 4.8e-12 73.2 37 89.2
unitig_26.g8861 Utricularia gibba HOM05D001380 ORTHO05D001912 4.8e-12 73.2 37 89.2
unitig_750.g28404 Utricularia gibba HOM05D001380 ORTHO05D001912 4.8e-12 73.2 37 89.2
vmacro21088 Vaccinium macrocarpon HOM05D001380 ORTHO05D001912 4.8e-12 73.2 37 89.2
Migut.O00570 Erythranthe guttata HOM05D001380 ORTHO05D001912 6.3e-12 72.8 37 89.2
TAR636G0007 Trochodendron aralioides HOM05D001380 ORTHO05D001912 6.3e-12 72.8 37 86.5
Dinv44020 Davidia involucrata HOM05D001380 ORTHO05D001912 8.2e-12 72.4 37 86.5
Gohir.A08G056100 Gossypium hirsutum HOM05D001380 ORTHO05D001912 8.2e-12 72.4 37 86.5
Gohir.D08G065400 Gossypium hirsutum HOM05D001380 ORTHO05D001912 8.2e-12 72.4 37 86.5
Gorai.004G067700 Gossypium raimondii HOM05D001380 ORTHO05D001912 8.2e-12 72.4 37 86.5
Nn1g00651 Nelumbo nucifera HOM05D001380 ORTHO05D001912 8.2e-12 72.4 34 97.1
GSVIVG01018372001 Vitis vinifera HOM05D001380 ORTHO05D001912 8.2e-12 72.4 37 86.5
CiPaw.13G021900 Carya illinoinensis HOM05D001380 ORTHO05D001912 1.1e-11 72.0 37 86.5
Cc02_g25650 Coffea canephora HOM05D001380 ORTHO05D001912 1.1e-11 72.0 37 89.2
QL04p026136 Quercus lobata HOM05D001380 ORTHO05D001912 1.1e-11 72.0 35 88.6
Rhsim01G0144200 Rhododendron simsii HOM05D001380 ORTHO05D001912 1.1e-11 72.0 37 86.5
Sabra14G0031900 Salix brachista HOM05D001380 ORTHO05D001912 1.1e-11 72.0 37 86.5
THA.LOC104817176 Tarenaya hassleriana HOM05D001380 ORTHO05D001912 1.1e-11 72.0 37 91.9
SalBow4G1172 Salvia bowleyana HOM05D001380 ORTHO05D001912 1.4e-11 71.6 37 86.5
THA.LOC104802507 Tarenaya hassleriana HOM05D001380 ORTHO05D001912 1.4e-11 71.6 37 89.2
Cfa011021 Carpinus fangiana HOM05D001380 ORTHO05D001912 1.8e-11 71.2 37 86.5
COL.COLO4_12350 Corchorus olitorius HOM05D001380 ORTHO05D001912 1.8e-11 71.2 37 83.8
Haze_02904 Corylus avellana HOM05D001380 ORTHO05D001912 1.8e-11 71.2 37 86.5
Duzib268G1163 Durio zibethinus HOM05D001380 ORTHO05D001912 1.8e-11 71.2 37 83.8
MSTRG.4962 Avicennia marina HOM05D001380 ORTHO05D001912 2.4e-11 70.9 37 89.2
MELO3C006263.2 Cucumis melo HOM05D001380 ORTHO05D001912 2.4e-11 70.9 37 86.5
Medtr7g080760 Medicago truncatula HOM05D001380 ORTHO05D001912 2.4e-11 70.9 37 89.2
PSO063G6587 Papaver somniferum HOM05D001380 ORTHO05D001912 2.4e-11 70.9 37 86.5
PSO782G0310 Papaver somniferum HOM05D001380 ORTHO05D001912 2.4e-11 70.9 37 86.5
Potri.002G135600 Populus trichocarpa HOM05D001380 ORTHO05D001912 2.4e-11 70.9 37 83.8
Sabra02G0105400 Salix brachista HOM05D001380 ORTHO05D001912 2.4e-11 70.9 37 83.8
arahy.Tifrunner.gnm1.ann1.LYA50U Arachis hypogaea HOM05D001380 ORTHO05D001912 3.1e-11 70.5 37 86.5
CANSAT25G0268 Cannabis sativa HOM05D001380 ORTHO05D001912 3.1e-11 70.5 37 86.5
Duzib133G1380 Durio zibethinus HOM05D001380 ORTHO05D001912 3.1e-11 70.5 37 83.8
Manes.05G058700 Manihot esculenta HOM05D001380 ORTHO05D001912 3.1e-11 70.5 37 89.2
Oeu034854.1 Olea europaea HOM05D001380 ORTHO05D001912 3.1e-11 70.5 37 83.8
TWI14G0244 Tripterygium wilfordii HOM05D001380 ORTHO05D001912 3.1e-11 70.5 37 86.5
EL10Ac1g00713 Beta vulgaris HOM05D001380 ORTHO05D001912 4.1e-11 70.1 37 86.5
Ca_08026_v3 Cicer arietinum L. HOM05D001380 ORTHO05D001912 4.1e-11 70.1 37 89.2
Dinv43588 Davidia involucrata HOM05D001380 ORTHO05D001912 4.1e-11 70.1 37 83.8
Thecc.01G402700 Theobroma cacao HOM05D001380 ORTHO05D001912 4.1e-11 70.1 37 83.8
CiPaw.14G016600 Carya illinoinensis HOM05D001380 ORTHO05D001912 5.3e-11 69.7 37 81.1
Duzib138G1852 Durio zibethinus HOM05D001380 ORTHO05D001912 5.3e-11 69.7 37 81.1
Lalb_Chr19g0126301 Lupinus albus HOM05D001380 ORTHO05D001912 5.3e-11 69.7 37 86.5
Potri.014G044000 Populus trichocarpa HOM05D001380 ORTHO05D001912 5.3e-11 69.7 37 81.1
Ah.05g177640 Amaranthus hybridus HOM05D001380 ORTHO05D001912 9.1e-11 68.9 37 83.8
Aqoxy3G02556 Aquilegia oxysepala HOM05D001380 ORTHO05D001912 9.1e-11 68.9 37 89.2
arahy.Tifrunner.gnm1.ann1.S1U0T7 Arachis hypogaea HOM05D001380 ORTHO05D001912 9.1e-11 68.9 37 83.8
MELO3C006264.2 Cucumis melo HOM05D001380 ORTHO05D001912 9.1e-11 68.9 37 86.5
CsaV3_3G010390 Cucumis sativus L. HOM05D001380 ORTHO05D001912 9.1e-11 68.9 37 86.5
CsaV3_3G010400 Cucumis sativus L. HOM05D001380 ORTHO05D001912 9.1e-11 68.9 37 86.5
Eucgr.E01706 Eucalyptus grandis HOM05D001380 ORTHO05D001912 9.1e-11 68.9 37 83.8
Phvul.008G051000 Phaseolus vulgaris HOM05D001380 ORTHO05D001912 9.1e-11 68.9 37 83.8
VMungo1383G1021 Vigna mungo HOM05D001380 ORTHO05D001912 9.1e-11 68.9 37 83.8
Prupe.2G115500 Prunus persica HOM05D001380 ORTHO05D001912 1.2e-10 68.6 37 83.8
TAR375G0543 Trochodendron aralioides HOM05D001380 ORTHO05D001912 1.2e-10 68.6 35 85.7
Atru.chr5.41 Acer truncatum HOM05D001380 ORTHO05D001912 1.5e-10 68.2 37 83.8
Atru.chr5.71 Acer truncatum HOM05D001380 ORTHO05D001912 1.5e-10 68.2 37 83.8
ATR1096G128 Amborella trichopoda HOM05D001380 ORTHO05D001912 1.5e-10 68.2 35 85.7
Ciclev10022877m.g Citrus clementina HOM05D001380 ORTHO05D001912 1.5e-10 68.2 37 81.1
FvH4_7g08760 Fragaria vesca HOM05D001380 ORTHO05D001912 1.5e-10 68.2 37 83.8
FAN01G0176 Fragaria x ananassa HOM05D001380 ORTHO05D001912 1.5e-10 68.2 37 83.8
FAN03G2771 Fragaria x ananassa HOM05D001380 ORTHO05D001912 1.5e-10 68.2 37 83.8
FAN06G1502 Fragaria x ananassa HOM05D001380 ORTHO05D001912 1.5e-10 68.2 37 83.8
FAN10G0378 Fragaria x ananassa HOM05D001380 ORTHO05D001912 1.5e-10 68.2 37 83.8
FAN10G3503 Fragaria x ananassa HOM05D001380 ORTHO05D001912 1.5e-10 68.2 37 83.8
Glyma.09G247100 Glycine max HOM05D001380 ORTHO05D001912 1.5e-10 68.2 37 83.8
Glyma.18G245900 Glycine max HOM05D001380 ORTHO05D001912 1.5e-10 68.2 37 83.8
MBI19_g36138_MAGBIO Magnolia biondii HOM05D001380 ORTHO05D001912 1.5e-10 68.2 37 86.5
MBI19_g40363_MAGBIO Magnolia biondii HOM05D001380 ORTHO05D001912 1.5e-10 68.2 37 86.5
TPR.G28215 Trifolium pratense HOM05D001380 ORTHO05D001912 1.5e-10 68.2 37 83.8
Oeu037411.1 Olea europaea HOM05D001380 ORTHO05D001912 2.0e-10 67.8 37 78.4
TWI59G0169 Tripterygium wilfordii HOM05D001380 ORTHO05D001912 2.0e-10 67.8 37 86.5
Lj1g0012093 Lotus japonicus HOM05D001380 ORTHO05D001912 2.6e-10 67.4 37 83.8
CDE08G0390 Ceratophyllum demersum HOM05D001380 ORTHO05D001912 3.4e-10 67.0 37 83.8
CDE08G1217 Ceratophyllum demersum HOM05D001380 ORTHO05D001912 3.4e-10 67.0 37 83.8
SalBow5G4074 Salvia bowleyana HOM05D001380 ORTHO05D001912 3.4e-10 67.0 37 81.1
CAN.G756.15 Capsicum annuum HOM05D001380 ORTHO05D001912 4.5e-10 66.6 37 83.8
RcHm_v2.0_Chr1g0344041 Rosa chinensis HOM05D001380 ORTHO05D001912 4.5e-10 66.6 37 83.8
Solyc01g088570.3 Solanum lycopersicum HOM05D001380 ORTHO05D001912 4.5e-10 66.6 37 83.8
Sopen01g035430 Solanum pennellii HOM05D001380 ORTHO05D001912 4.5e-10 66.6 37 83.8
PGSC0003DMG400001685 Solanum tuberosum HOM05D001380 ORTHO05D001912 4.5e-10 66.6 37 83.8
Actinidia21610 Actinidia chinensis HOM05D001380 ORTHO05D001912 5.9e-10 66.2 36 83.3
Lalb_Chr03g0040741 Lupinus albus HOM05D001380 ORTHO05D001912 7.7e-10 65.9 37 83.8
Nitab4.5_0005034g0040 Nicotiana tabacum HOM05D001380 ORTHO05D001912 7.7e-10 65.9 37 81.1
Peaxi162Scf00745g00014 Petunia axillaris HOM05D001380 ORTHO05D001912 7.7e-10 65.9 37 81.1
RcHm_v2.0_Chr4g0442511 Rosa chinensis HOM05D001380 ORTHO05D001912 7.7e-10 65.9 35 82.9
Psat3g101240 Pisum sativum HOM05D001380 ORTHO05D001912 1.0e-09 65.5 37 83.8
Sc26g0001770 Simmondsia chinensis HOM05D001380 ORTHO05D001912 1.0e-09 65.5 37 81.1
PGR042G1389 Punica granatum HOM05D001380 ORTHO05D001912 1.3e-09 65.1 37 81.1
Hund27420 Selenicereus undatus HOM05D001380 ORTHO05D001912 1.3e-09 65.1 37 81.1
HPP92_011315 Vanilla planifolia HOM05D001380 ORTHO05D001912 1.3e-09 65.1 35 82.9
AUR62013790 Chenopodium quinoa HOM05D001380 ORTHO05D001912 2.2e-09 64.3 37 78.4
AUR62023365 Chenopodium quinoa HOM05D001380 ORTHO05D001912 2.2e-09 64.3 37 78.4
Os07g0222800 Oryza sativa ssp. japonica HOM05D001380 ORTHO05D001912 2.2e-09 64.3 37 83.8
SEGI_26097 Sequoiadendron giganteum HOM05D001380 ORTHO05D001912 3.8e-09 63.5 37 78.4
Zm00001eb303420 Zea mays HOM05D001380 ORTHO05D001912 5.0e-09 63.2 37 83.8
MD02G1225300 Malus domestica HOM05D001380 ORTHO05D001912 1.4e-08 61.6 37 75.7
Eucgr.F02836 Eucalyptus grandis HOM05D001380 ORTHO05D001912 2.5e-08 60.8 37 78.4
Actinidia05790 Actinidia chinensis HOM05D001380 ORTHO05D001912 3.2e-08 60.5 37 70.3
MD07G1088600 Malus domestica HOM05D001380 ORTHO05D001912 3.2e-08 60.5 37 75.7
Mapoly0022s0108 Marchantia polymorpha HOM05D001380 ORTHO05D001912 1.4e-06 55.1 37 73.0
BcaC08g43432 Brassica carinata HOM05D001380 ORTHO05D039104 3.0e-06 53.9 29 89.7
ClCG05G002860 Citrullus lanatus HOM05D001380 ORTHO05D001912 6.7e-06 52.8 27 88.9
Potri.013G084500 Populus trichocarpa HOM05D001380 ORTHO05D001912 6.7e-06 52.8 37 62.2
Potri.019G055300 Populus trichocarpa HOM05D001380 ORTHO05D001912 6.7e-06 52.8 37 62.2
QL01p048084 Quercus lobata HOM05D001380 ORTHO05D001912 6.7e-06 52.8 35 62.9
Sabra19G0064500 Salix brachista HOM05D001380 ORTHO05D001912 6.7e-06 52.8 37 62.2


User provided reference genes

Program Settings