Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 3.0e-260 901.4 462 100.0
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 1.7e-252 875.5 463 96.5
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 3.8e-247 857.8 462 94.8
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 9.3e-246 853.2 462 94.2
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 2.4e-241 838.6 463 92.2
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 1.1e-238 829.7 463 92.0
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 2.4e-238 828.6 463 91.6
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 3.2e-238 828.2 463 91.6
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 3.2e-238 828.2 463 91.6
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 3.2e-238 828.2 463 91.6
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 5.4e-238 827.4 463 91.6
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 6.0e-237 823.9 463 91.6
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 9.3e-230 800.0 463 88.3
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 6.0e-229 797.3 463 88.6
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 6.0e-229 797.3 463 88.6
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 1.3e-226 789.6 490 83.5
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 2.6e-224 781.9 481 84.6
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 2.5e-219 765.4 451 85.6
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 1.3e-218 763.1 484 83.1
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 4.1e-217 758.1 451 84.5
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 9.0e-217 756.9 454 85.0
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 4.5e-216 754.6 455 84.2
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 7.2e-214 747.3 452 84.1
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 2.7e-213 745.3 455 84.0
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 3.5e-213 745.0 455 83.3
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 2.3e-212 742.3 455 83.1
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 8.7e-212 740.3 451 82.7
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 1.1e-211 740.0 456 83.1
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 7.4e-211 737.3 455 82.9
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 3.1e-209 731.9 461 81.1
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 3.4e-208 728.4 462 80.5
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 9.4e-190 667.2 450 73.8
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 2.7e-189 665.6 448 74.6
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 8.8e-188 660.6 449 72.2
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 2.0e-187 659.4 448 74.1
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 7.0e-185 651.0 449 71.9
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 9.1e-185 650.6 474 68.6
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 7.7e-184 647.5 451 71.0
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 1.7e-183 646.4 449 69.9
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 8.5e-183 644.0 449 71.3
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 2.5e-182 642.5 454 70.0
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 2.1e-181 639.4 448 72.3
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 2.7e-181 639.0 451 70.3
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 2.7e-181 639.0 448 72.3
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 2.7e-181 639.0 450 70.0
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 1.4e-180 636.7 449 70.2
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.3e-180 636.0 451 69.8
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 2.0e-179 632.9 448 68.8
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 2.6e-179 632.5 452 68.1
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 7.5e-179 630.9 391 80.3
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 7.5e-179 630.9 449 71.7
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 9.8e-179 630.6 448 69.2
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 3.7e-178 628.6 452 69.5
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 6.3e-178 627.9 449 71.7
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 1.1e-177 627.1 440 71.1
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.8e-177 626.3 449 69.0
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 5.4e-177 624.8 449 71.0
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 1.6e-176 623.2 454 69.4
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 5.9e-176 621.3 450 70.7
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 7.7e-176 620.9 448 69.0
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 1.7e-175 619.8 455 69.0
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.7e-175 619.8 453 65.8
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 1.7e-175 619.8 453 65.8
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 5.0e-175 618.2 448 68.8
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 8.5e-175 617.5 450 69.1
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 1.1e-174 617.1 450 69.6
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 1.5e-174 616.7 488 66.0
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 1.9e-174 616.3 448 67.9
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 3.2e-174 615.5 488 66.0
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 3.2e-174 615.5 452 69.0
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 3.2e-174 615.5 450 69.6
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 5.5e-174 614.8 456 66.0
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 2.7e-173 612.5 449 67.9
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 2.7e-173 612.5 465 66.9
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 8.0e-173 610.9 435 70.3
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 4.0e-172 608.6 452 67.9
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 4.4e-171 605.1 448 67.2
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 2.8e-170 602.4 450 66.0
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 2.8e-170 602.4 450 66.0
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 6.3e-170 601.3 461 66.4
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 8.3e-170 600.9 454 65.2
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.2e-168 597.0 448 68.5
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 2.0e-168 596.3 458 67.2
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 2.0e-168 596.3 435 68.5
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 1.0e-167 594.0 456 65.1
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 1.7e-167 593.2 398 74.9
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 3.8e-167 592.0 477 61.0
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 1.5e-166 590.1 435 68.5
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 4.7e-165 585.1 447 64.7
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 1.8e-164 583.2 487 62.2
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 5.2e-164 581.6 451 64.3
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 5.2e-164 581.6 458 63.8
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 1.2e-163 580.5 446 64.3
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 1.5e-163 580.1 419 68.3
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 2.0e-163 579.7 449 65.5
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 2.2e-162 576.2 442 65.6
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 2.9e-162 575.9 417 69.3
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 1.1e-161 573.9 440 64.3
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 5.4e-161 571.6 470 61.3
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 5.9e-160 568.2 449 63.0
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 2.3e-159 566.2 442 63.1
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 2.3e-159 566.2 445 62.9
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 2.3e-156 556.2 458 60.9
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 1.2e-155 553.9 550 53.1
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 1.2e-155 553.9 465 61.1
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 4.4e-155 552.0 396 69.7
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 1.1e-153 547.4 407 65.1
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 1.9e-150 536.6 388 68.6
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 4.0e-148 528.9 479 57.2
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 7.3e-142 508.1 431 58.2
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 1.5e-139 500.4 453 55.4
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 2.2e-138 496.5 409 61.1
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 6.4e-138 495.0 445 56.6
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 1.6e-136 490.3 446 54.7
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 1.0e-135 487.6 454 56.6
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 3.3e-134 482.6 388 61.9
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 2.1e-133 479.9 446 53.8
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.6e-131 473.0 351 67.8
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 5.8e-131 471.9 452 52.7
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 3.9e-127 459.1 434 52.5
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 8.1e-125 451.4 463 53.8
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 8.1e-125 451.4 290 79.3
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 9.9e-123 444.5 387 57.1
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 2.9e-122 443.0 448 50.2
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 4.2e-121 439.1 445 56.6
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 7.1e-121 438.3 448 49.1
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.6e-120 437.2 448 48.9
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 5.6e-118 428.7 281 74.0
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 3.8e-114 416.0 450 46.9
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 5.5e-113 412.1 317 66.2
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 3.9e-103 379.4 451 45.5
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 3.0e-95 353.2 255 67.8
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.1e-94 351.3 395 48.6
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 6.5e-90 335.5 266 63.9
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.1e-81 308.1 447 39.1
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 4.4e-78 296.2 311 53.4
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 1.4e-71 274.6 188 71.3
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 4.5e-67 259.6 452 38.1
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 1.1e-57 228.4 173 64.7
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 8.8e-55 218.8 158 67.7
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 7.5e-54 215.7 129 76.7
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 6.1e-48 196.1 155 61.9
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.5e-46 191.4 193 50.3
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 8.9e-39 165.6 121 66.9
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 2.9e-37 160.6 125 61.6
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 4.7e-32 143.3 130 56.2
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 3.4e-30 137.1 94 70.2
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 6.4e-29 132.9 116 58.6
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 1.3e-26 125.2 112 53.6
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 6.8e-23 112.8 72 73.6
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 2.4e-20 104.4 101 47.5
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 2.4e-20 104.4 72 65.3
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 6.2e-16 89.7 59 74.6
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 4.9e-13 80.1 42 83.3
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 7.1e-12 76.3 44 84.1
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 2.7e-11 74.3 63 58.7
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.3e-08 65.5 49 63.3
FvH4_5g06577 Fragaria vesca HOM05D000025 ORTHO05D000040 7.6e-06 56.2 37 75.7


User provided reference genes

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