Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 0.0e+00 1122.1 569 100.0
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 7.8e-287 989.9 600 86.2
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 8.6e-286 986.5 614 84.7
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 2.9e-281 971.5 613 84.0
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 1.6e-271 939.1 605 82.3
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 3.0e-270 934.9 610 81.5
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 1.4e-267 926.0 607 81.5
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 1.6e-263 912.5 598 81.1
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 8.1e-260 900.2 593 80.6
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 8.1e-260 900.2 593 80.6
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 4.5e-258 894.4 604 78.8
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 3.9e-246 854.7 605 74.2
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 4.3e-245 851.3 594 75.8
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 4.3e-245 851.3 586 77.0
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 6.3e-244 847.4 597 75.4
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 1.8e-243 845.9 599 75.8
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 2.0e-242 842.4 592 75.7
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 2.0e-242 842.4 539 81.1
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 2.0e-242 842.4 603 74.5
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.3e-241 839.7 592 75.5
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 3.2e-240 835.1 569 77.2
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 1.6e-239 832.8 569 77.2
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 3.9e-238 828.2 603 73.0
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 1.1e-237 826.6 569 76.4
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 6.9e-235 817.4 572 73.8
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 1.5e-234 816.2 602 71.9
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 5.9e-234 814.3 609 71.8
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 2.2e-233 812.4 569 75.4
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 2.2e-233 812.4 569 75.4
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 2.1e-231 805.8 580 72.9
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 1.8e-230 802.7 583 72.6
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 8.8e-230 800.4 581 72.6
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 1.1e-229 800.0 608 70.4
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.1e-229 800.0 584 72.4
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 4.4e-229 798.1 608 70.1
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 7.4e-229 797.3 595 71.4
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 3.7e-228 795.0 598 70.6
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 4.8e-228 794.7 609 69.8
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 6.3e-228 794.3 603 70.5
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 3.1e-227 792.0 599 70.3
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 2.0e-226 789.3 600 70.7
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.0e-225 786.9 587 70.9
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 1.3e-225 786.6 610 69.3
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 3.8e-225 785.0 621 68.6
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 3.8e-225 785.0 621 68.6
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 5.0e-225 784.6 587 70.7
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 6.5e-225 784.3 619 68.7
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 8.5e-225 783.9 603 69.3
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 8.5e-225 783.9 601 69.2
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 1.1e-224 783.5 587 70.5
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 1.4e-224 783.1 615 68.6
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.9e-224 782.7 599 68.9
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 3.2e-224 781.9 621 68.4
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 3.2e-224 781.9 587 70.0
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 5.5e-224 781.2 582 71.1
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 7.2e-224 780.8 621 68.3
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.6e-223 779.6 600 68.8
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 2.7e-223 778.9 588 70.4
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.7e-223 778.9 576 71.9
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 4.7e-223 778.1 603 69.5
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 4.7e-223 778.1 610 68.4
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 6.1e-223 777.7 600 68.7
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 6.1e-223 777.7 577 71.9
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.4e-222 776.5 580 70.7
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.4e-222 776.5 582 70.3
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 3.0e-222 775.4 605 68.8
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 3.9e-222 775.0 579 69.9
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 6.7e-222 774.2 607 68.4
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 8.8e-222 773.9 617 66.9
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 1.1e-221 773.5 597 68.5
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 4.4e-221 771.5 602 68.8
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 7.4e-221 770.8 571 70.4
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 7.4e-221 770.8 599 69.1
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 4.8e-220 768.1 599 69.1
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 8.2e-220 767.3 577 71.4
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 8.2e-220 767.3 607 68.0
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 1.8e-219 766.1 599 68.3
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 1.8e-219 766.1 595 69.2
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 3.1e-219 765.4 573 71.0
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 5.3e-219 764.6 599 68.8
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.2e-218 763.5 582 70.1
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.2e-218 763.5 583 70.7
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 1.6e-218 763.1 580 70.2
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.6e-218 762.3 576 71.2
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 3.5e-218 761.9 572 70.5
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 3.5e-218 761.9 606 67.5
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 4.5e-218 761.5 596 68.3
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 1.0e-217 760.4 572 70.1
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 1.0e-217 760.4 585 69.6
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 1.0e-217 760.4 585 69.6
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 2.2e-217 759.2 573 69.6
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 2.2e-217 759.2 572 70.1
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 3.8e-217 758.4 573 71.0
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 8.5e-217 757.3 572 69.9
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 1.9e-216 756.1 583 70.2
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 3.2e-216 755.4 590 68.1
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 2.7e-215 752.3 571 69.7
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 3.0e-214 748.8 572 69.2
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 4.0e-214 748.4 573 69.1
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 5.7e-213 744.6 527 73.4
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 1.3e-212 743.4 601 66.1
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 4.8e-212 741.5 585 67.4
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 8.2e-212 740.7 604 66.2
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 2.9e-209 732.3 572 67.8
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 3.8e-209 731.9 572 68.7
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 5.0e-209 731.5 641 62.6
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 1.5e-208 729.9 525 72.2
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 1.5e-208 729.9 562 67.6
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 4.4e-205 718.4 570 66.0
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 2.2e-204 716.1 513 73.1
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 2.8e-204 715.7 575 66.8
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 1.6e-202 709.9 581 64.2
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.3e-201 706.8 385 92.5
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 5.5e-200 701.4 523 69.2
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 5.5e-200 701.4 523 69.2
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 2.1e-199 699.5 589 64.3
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.0e-198 697.2 565 65.7
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 9.8e-197 690.6 567 65.4
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 2.8e-196 689.1 558 67.7
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 7.8e-194 681.0 568 64.4
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 8.6e-193 677.6 566 65.4
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 1.9e-192 676.4 605 62.8
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 2.8e-191 672.5 525 66.5
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.4e-190 670.2 523 64.6
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 2.0e-189 666.4 526 63.5
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 3.7e-188 662.1 422 79.4
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 2.4e-187 659.4 524 64.5
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 3.5e-186 655.6 519 65.9
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 3.5e-186 655.6 514 67.5
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 9.5e-184 647.5 418 77.8
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 4.7e-183 645.2 514 67.3
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 4.0e-182 642.1 411 78.6
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 5.2e-182 641.7 556 61.7
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 1.5e-181 640.2 416 77.4
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 7.5e-181 637.9 580 60.5
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 7.0e-179 631.3 489 66.7
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 9.2e-179 630.9 494 66.2
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.2e-178 630.6 498 66.1
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 4.6e-178 628.6 505 65.1
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.3e-176 622.5 553 59.9
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 3.7e-172 609.0 496 63.9
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 4.1e-171 605.5 591 58.9
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 7.1e-171 604.7 553 58.2
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 2.7e-170 602.8 521 62.6
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 6.2e-167 591.7 551 58.3
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 4.2e-155 552.4 483 59.2
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 1.9e-147 526.9 565 50.8
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 4.6e-146 522.3 451 64.5
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 1.4e-123 447.6 527 50.7
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 7.2e-123 445.3 460 54.6
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 5.7e-120 435.6 302 77.5
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 1.4e-110 404.4 319 67.4
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.1e-110 403.3 323 67.5
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 2.9e-76 290.4 169 85.8
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 1.5e-75 288.1 169 84.0
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 6.8e-73 279.3 166 83.1
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.2e-72 278.5 157 87.3
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 4.4e-72 276.6 166 82.5
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 3.3e-67 260.4 145 91.7
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 1.2e-37 162.2 123 67.5
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 3.9e-36 157.1 98 80.6
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 9.3e-22 109.4 312 27.6
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 4.6e-21 107.1 115 53.0
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 1.1e-19 102.4 60 85.0
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.3e-18 99.0 302 28.8
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.5e-16 92.0 217 31.8
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.8e-16 90.1 185 35.7
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 3.8e-15 87.4 147 36.1
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 6.0e-13 80.1 70 70.0
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 1.1e-11 75.9 97 46.4
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 9.7e-11 72.8 88 47.7
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 8.2e-10 69.7 86 45.3
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 4.1e-09 67.4 55 60.0


User provided reference genes

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