Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 3.0e-120 435.3 228 100.0
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 2.8e-118 428.7 228 98.2
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 1.6e-113 412.9 228 94.7
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 3.9e-112 408.3 228 93.4
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 5.6e-111 404.4 228 92.1
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 1.7e-107 392.9 228 91.7
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 3.9e-104 381.7 228 86.4
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 2.8e-102 375.6 229 89.5
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 8.1e-102 374.0 229 89.1
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 1.1e-101 373.6 228 88.6
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 9.0e-101 370.5 229 90.0
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 9.9e-100 367.1 228 87.7
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 9.9e-100 367.1 228 87.7
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 9.9e-100 367.1 228 88.6
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 2.2e-99 365.9 229 87.3
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 2.9e-99 365.5 228 87.3
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 2.7e-97 359.0 228 80.7
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 1.5e-95 353.2 228 78.9
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 3.3e-95 352.1 250 79.6
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 4.3e-95 351.7 242 82.2
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 1.3e-94 350.1 219 87.2
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.6e-94 349.7 228 80.3
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 2.5e-90 335.9 217 85.3
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 1.4e-77 293.5 206 74.3
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 5.3e-77 291.6 197 74.6
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 7.7e-76 287.7 235 65.1
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 1.0e-75 287.3 185 78.4
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 1.3e-75 287.0 184 77.7
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 1.3e-75 287.0 186 78.0
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 2.2e-75 286.2 205 72.2
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 2.2e-75 286.2 171 80.7
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 3.8e-75 285.4 193 73.6
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 6.5e-75 284.6 207 71.5
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 6.5e-75 284.6 184 76.6
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 1.4e-74 283.5 216 69.0
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 1.9e-74 283.1 224 67.9
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 1.9e-74 283.1 226 67.3
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 2.1e-73 279.6 234 65.8
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 2.7e-73 279.3 194 74.7
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 4.6e-73 278.5 192 73.4
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 4.6e-73 278.5 192 73.4
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 1.0e-72 277.3 205 69.3
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.4e-72 276.9 211 69.2
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 1.4e-72 276.9 191 72.3
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 1.8e-72 276.6 229 63.8
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 1.8e-72 276.6 222 65.3
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 3.9e-72 275.4 189 72.5
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 3.9e-72 275.4 192 72.9
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 3.9e-72 275.4 192 72.9
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 3.9e-72 275.4 210 67.1
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 6.7e-72 274.6 218 67.0
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 6.7e-72 274.6 232 64.2
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 8.8e-72 274.2 210 68.1
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 8.8e-72 274.2 228 63.6
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 1.1e-71 273.9 189 72.0
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 1.5e-71 273.5 165 80.0
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.0e-71 273.1 228 66.2
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 2.0e-71 273.1 211 69.7
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 2.0e-71 273.1 192 72.4
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 2.5e-71 272.7 214 65.9
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 4.3e-71 271.9 236 63.6
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 9.7e-71 270.8 228 65.8
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 9.7e-71 270.8 191 74.3
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 1.3e-70 270.4 164 81.1
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 1.7e-70 270.0 170 77.6
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 2.8e-70 269.2 200 70.0
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 4.8e-70 268.5 229 62.0
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 4.8e-70 268.5 183 72.1
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 8.2e-70 267.7 200 77.5
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 8.2e-70 267.7 182 73.1
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 8.2e-70 267.7 182 73.1
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 1.1e-69 267.3 182 73.1
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 1.4e-69 266.9 190 74.7
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 1.8e-69 266.5 208 67.3
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 1.8e-69 266.5 205 67.8
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 2.4e-69 266.2 227 64.8
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 9.1e-69 264.2 186 71.5
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 1.5e-68 263.5 185 73.0
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 4.5e-68 261.9 216 62.5
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 5.9e-68 261.5 203 66.5
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 7.7e-68 261.2 203 67.0
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 3.8e-67 258.8 197 71.1
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 3.8e-67 258.8 190 67.4
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 5.0e-67 258.5 228 61.0
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 6.5e-67 258.1 224 60.7
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 8.5e-67 257.7 178 72.5
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 1.2e-65 253.8 192 66.1
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 1.2e-65 253.8 210 63.3
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 1.6e-65 253.4 206 65.5
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 2.1e-65 253.1 195 66.2
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 2.7e-65 252.7 216 61.6
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 3.6e-65 252.3 194 67.0
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 6.1e-65 251.5 214 64.0
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 7.9e-65 251.1 215 64.2
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 1.0e-64 250.8 186 66.7
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 1.0e-64 250.8 195 65.6
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 1.0e-64 250.8 210 62.9
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 1.8e-64 250.0 224 61.6
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 3.9e-64 248.8 149 79.2
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 6.7e-64 248.1 162 74.1
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 6.7e-64 248.1 211 64.0
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 6.7e-64 248.1 146 82.2
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 1.1e-63 247.3 218 59.2
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 1.5e-63 246.9 164 73.2
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.0e-63 246.5 211 63.5
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 2.0e-63 246.5 195 64.6
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 2.6e-63 246.1 189 67.7
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 3.3e-63 245.7 233 60.1
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 5.7e-63 245.0 220 59.1
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 9.7e-63 244.2 181 70.2
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 1.7e-62 243.4 234 58.5
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 2.2e-62 243.0 201 62.2
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 4.8e-62 241.9 170 67.6
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 1.8e-61 240.0 195 63.6
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 1.8e-61 240.0 210 62.4
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 2.4e-61 239.6 180 68.9
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 2.4e-61 239.6 154 74.7
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 4.1e-61 238.8 220 60.9
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 5.3e-61 238.4 184 65.8
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.5e-60 236.9 196 62.2
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 5.9e-60 235.0 181 65.2
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 2.2e-59 233.0 162 69.8
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 1.1e-58 230.7 157 66.2
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 3.2e-58 229.2 210 60.0
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 3.2e-58 229.2 165 66.1
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 3.0e-56 222.6 133 79.7
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.3e-55 219.2 232 53.4
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 4.4e-55 218.8 139 74.8
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 5.7e-55 218.4 139 72.7
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 2.8e-54 216.1 127 80.3
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 1.1e-53 214.2 127 78.0
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 1.8e-53 213.4 132 77.3
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 3.6e-49 199.1 134 72.4
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 1.5e-47 193.7 144 61.8
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 9.8e-47 191.0 169 63.3
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 4.8e-46 188.7 143 67.1
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 6.3e-46 188.3 185 59.5
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 7.0e-45 184.9 145 59.3
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 7.0e-45 184.9 168 62.5
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.2e-44 184.1 221 49.8
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.0e-44 183.3 187 52.9
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 2.5e-42 176.4 116 70.7
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 3.6e-41 172.6 106 77.4
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 8.8e-40 167.9 97 81.4
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 2.8e-38 162.9 112 78.6
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.2e-36 157.5 178 53.4
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 4.5e-36 155.6 111 75.7
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 5.0e-35 152.1 140 49.3
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 1.6e-33 147.1 118 65.3
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 1.5e-31 140.6 132 49.2
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 2.6e-31 139.8 77 85.7
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 5.7e-31 138.7 127 62.2
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 1.3e-30 137.5 75 84.0
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.9e-30 136.3 190 47.9
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 1.4e-29 134.0 77 81.8
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 3.5e-28 129.4 217 44.2
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 1.7e-27 127.1 86 74.4
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.3e-27 126.7 190 46.3
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 2.9e-22 109.8 71 73.2
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 4.9e-22 109.0 70 78.6
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.0e-19 101.3 72 70.8
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 7.3e-18 95.1 47 91.5
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 3.2e-13 79.7 53 75.5
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 5.4e-13 79.0 43 83.7
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 7.1e-13 78.6 42 85.7
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 9.2e-13 78.2 42 83.3
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 4.6e-12 75.9 125 44.0
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 9.5e-10 68.2 37 81.1
AagrBONN_evm.TU.Sc2ySwM_344.4461 Anthoceros agrestis HOM05D004281 ORTHO05D004839 1.8e-08 63.9 44 70.5
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 2.6e-07 60.1 96 33.3
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 7.6e-07 58.5 143 37.8
Cc05_g01000 Coffea canephora HOM05D004281 ORTHO05D004839 2.2e-06 57.0 32 78.1


User provided reference genes

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